IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
79	 54.36	0	87558..88532	-	324	19551330	-	NCgl0079	-	acetyltransferase or hydrolase
80	 56.81	0	88542..89444	-	300	19551331	-	NCgl0080	-	acetyltransferase or hydrolase
81	 53.00	0	89615..90448	+	277	19551332	-	NCgl0081	-	hypothetical protein
82	 48.26	-1	90458..90973	-	171	19551333	-	NCgl0082	-	mar family transcriptional regulator
83	 52.81	0	91174..91476	+	100	19551334	ureA	NCgl0083	-	urease subunit gamma
84	 55.21	0	91503..91991	+	162	19551335	ureB	NCgl0084	-	urease subunit beta
85	 52.66	0	91992..93704	+	570	19551336	ureC	NCgl0085	-	urease subunit alpha
86	 50.42	-1	93729..94202	+	157	19551337	ureE	NCgl0086	-	urease accessory protein UreE
87	 51.54	0	94202..94882	+	226	19551338	-	NCgl0087	-	urease accessory protein UreF
88	 49.84	-1	94899..95516	+	205	19551339	-	NCgl0088	-	Ni2+-binding GTPase
89	 55.52	0	95517..96368	+	283	19551340	-	NCgl0089	-	urease accessory protein UreH
90	 52.31	0	96365..97144	-	259	19551341	-	NCgl0090	-	hydrolase or acyltransferase
91	 57.84	0	97316..98470	-	384	19551342	-	NCgl0091	-	permease
92	 54.64	0	98805..101582	-	925	19551343	-	NCgl0092	-	hypothetical protein
93	 54.95	0	101609..103435	-	608	19551344	-	NCgl0093	-	HSP90 family molecular chaperone
94	 56.03	0	103503..104912	+	469	19551345	-	NCgl0094	-	AMP nucleosidase
95	 57.22	0	105170..105751	-	193	19551346	-	NCgl0095	-	hypothetical protein
96	 58.92	+1	105838..106392	-	184	23308774	-	NCgl0096	-	thiamine pyrophosphate-requiring enzyme
97	 51.45	0	106627..107178	-	183	19551348	-	NCgl0097	-	hypothetical protein
98	 58.28	+1	107435..110893	+	1152	19551349	-	NCgl0098	-	proline dehydrogenase
99	 54.11	0	111374..112321	+	315	19551350	-	NCgl0099	-	oxidoreductase
100	 51.39	0	112470..114086	+	538	19551351	-	NCgl0100	-	putative p-aminobenzoyl-glutamate transporter
101	 54.79	0	114093..115481	+	462	19551352	-	NCgl0101	-	metal-dependent enzyme
102	 52.03	0	115578..115946	+	122	19551353	-	NCgl0102	-	hypothetical protein
103	 46.43	-2	116015..116266	+	83	19551354	-	NCgl0103	-	hypothetical protein
104	 54.82	0	116545..118089	-	514	19551355	-	NCgl0104	-	acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
105	 59.13	+1	118807..119589	-	260	19551357	-	NCgl0105	-	DeoR family sugar metabolism transcriptional regulator
106	 45.55	-2	120021..120413	+	130	23308775	-	NCgl0106	-	lactoylglutathione lyase or related lyase
107	 51.27	0	120410..120922	-	170	19551359	-	NCgl0107	-	phosphohistidine phosphatase SixA
108	 56.22	0	120948..122459	-	503	19551360	-	NCgl0108	-	mannitol-1-phosphate/altronate dehydrogenase
109	 55.31	0	122504..123841	-	445	19551361	-	NCgl0109	-	permease
110	 52.77	0	124121..124969	+	282	19551362	-	NCgl0110	-	DeoR family sugar metabolism transcriptional regulator
111	 59.15	+1	124971..126353	+	460	19551363	-	NCgl0111	-	sugar (pentulose and hexulose) kinase
112	 56.90	0	126350..127189	-	279	19551364	-	NCgl0112	-	panthothenate synthetase
113	 58.89	+1	127189..127998	-	269	19551365	panB	NCgl0113	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
114	 43.01	-2	128096..128860	-	254	19551366	-	NCgl0114	-	hypothetical protein
115	 50.71	0	129486..130118	-	210	23308776	-	NCgl0115	-	3-methyladenine DNA glycosylase
116	 49.01	-1	130145..130801	+	218	19551368	-	NCgl0116	-	hypothetical protein
117	 54.44	0	130812..131711	-	299	19551369	-	NCgl0117	-	esterase/lipase
118	 50.66	0	131822..132427	+	201	19551370	-	NCgl0118	-	HAD superfamily hydrolase
119	 59.18	+1	132424..132984	+	186	19551371	-	NCgl0119	-	carbonic anhydrase/acetyltransferase
120	 54.84	0	132968..134134	-	388	19551372	-	NCgl0120	-	transcriptional regulator
121	 53.49	0	134204..135478	-	424	19551373	-	NCgl0121	-	major facilitator superfamily permease
122	 60.89	+1	135515..136033	-	172	19551374	-	NCgl0122	-	hypothetical protein
123	 59.28	+1	136119..136565	-	148	23308777	-	NCgl0123	-	hypothetical protein
124	 55.54	0	137005..138747	+	580	19551377	-	NCgl0124	-	hypothetical protein
125	 52.98	0	138791..140332	+	513	19551378	-	NCgl0125	-	hypothetical protein
126	 54.14	0	140332..141792	+	486	19551379	-	NCgl0126	-	glycosyltransferase
127	 58.80	+1	141814..143529	+	571	19551380	-	NCgl0127	-	hypothetical protein
128	 54.31	0	143575..144642	+	355	19551381	-	NCgl0128	-	ankyrin repeat-containing protein
129	 54.55	0	144725..145483	+	252	19551382	-	NCgl0129	-	permease
130	 49.32	-1	145515..146396	-	293	19551383	-	NCgl0130	-	permease
131	 54.72	0	146522..147241	+	239	19551384	-	NCgl0131	-	hypothetical protein
132	 54.76	0	147238..147573	+	111	19551385	-	NCgl0132	-	hypothetical protein
133	 53.28	0	147570..147980	-	136	19551386	-	NCgl0133	-	aspartate alpha-decarboxylase
134	 55.17	0	148122..149783	+	553	19551387	-	NCgl0134	-	hypothetical protein
135	 57.02	0	149791..150930	-	379	19551388	-	NCgl0135	-	putative ammonia monooxygenase
136	 55.49	0	150963..151454	-	163	19551389	-	NCgl0136	-	hypothetical protein
137	 59.26	+1	151590..152372	+	260	19551390	-	NCgl0137	-	permease
138	 53.49	0	152431..152817	+	128	19551391	-	NCgl0138	-	hypothetical protein
139	 54.25	0	153223..155613	-	796	23308778	-	NCgl0139	-	HrpA-like helicase
140	 52.84	0	156144..156830	-	228	19551393	-	NCgl0140	-	acetyltransferase
141	 52.81	0	156848..157540	+	230	19551394	-	NCgl0141	-	alkylated DNA repair protein
142	 49.50	-1	157740..158141	+	133	19551395	-	NCgl0142	-	3-methyladenine DNA glycosylase
143	 54.04	0	158154..158834	+	226	19551396	-	NCgl0143	-	putative threonine efflux protein
144	 52.38	0	158869..159162	+	97	19551397	-	NCgl0144	-	hypothetical protein
145	 52.51	0	159162..160016	+	284	19551398	-	NCgl0145	-	lactoylglutathione lyase-like protein
146	 52.46	0	160029..160373	+	114	19551399	-	NCgl0146	-	methylated DNA-protein cysteine methyltransferase
147	 52.80	0	160470..161363	+	297	19551400	-	NCgl0147	-	hypothetical protein
148	 58.97	+1	161360..162268	-	302	19551401	-	NCgl0148	-	hypothetical protein
149	 53.54	0	162475..162870	+	131	19551402	-	NCgl0149	-	putative translation initiation inhibitor
150	 52.24	0	162983..163606	+	207	19551403	-	NCgl0150	-	hypothetical protein
151	 58.53	+1	163686..165614	-	642	19551404	-	NCgl0151	-	metalloendopeptidase
152	 54.44	0	165717..166460	+	247	19551405	-	NCgl0152	-	hypothetical protein
153	 54.87	0	166457..167422	+	321	19551406	-	NCgl0153	-	hypothetical protein
154	 58.40	+1	167834..168595	-	253	19551407	-	NCgl0154	-	transcriptional regulator
155	 56.22	0	169038..169994	+	318	19551408	-	NCgl0155	-	ribokinase family sugar kinase
156	 57.88	0	170044..170919	+	291	19551409	-	NCgl0156	-	hypothetical protein
157	 57.10	0	170933..172447	+	504	19551410	-	NCgl0157	-	NAD-dependent aldehyde dehydrogenase
158	 55.33	0	172468..173358	+	296	19551411	-	NCgl0158	-	hypothetical protein
159	 56.53	0	173365..175278	+	637	19551412	-	NCgl0159	-	thiamine pyrophosphate-requiring enzyme
160	 58.73	+1	175319..176275	+	318	19551413	-	NCgl0160	-	hypothetical protein
161	 57.69	0	176308..177321	+	337	19551414	-	NCgl0161	-	dehydrogenase
162	 53.72	0	177334..178206	+	290	19551415	-	NCgl0162	-	sugar phosphate isomerase/epimerase
163	 54.39	0	178285..179661	+	458	19551416	-	NCgl0163	-	major facilitator superfamily permease
164	 57.12	0	179689..180714	+	341	19551417	-	NCgl0164	-	dehydrogenase
165	 54.47	0	180842..181300	+	152	19551418	-	NCgl0165	-	hypothetical protein
166	 48.44	-1	181426..181650	+	74	19551419	-	NCgl0166	-	hypothetical protein
167	 57.33	0	181684..182679	-	331	19551420	-	NCgl0167	-	transcriptional regulator
168	 57.69	0	182819..184054	+	411	19551421	-	NCgl0168	-	dehydrogenase
169	 57.30	0	184077..185090	+	337	19551422	-	NCgl0169	-	sugar phosphate isomerase/epimerase
170	 43.06	-2	185214..185645	+	143	19551423	-	NCgl0170	-	hypothetical protein
171	 53.92	0	186508..186711	+	67	19551424	-	NCgl0171	-	cold shock protein
172	 47.55	-1	186877..187305	+	142	19551425	-	NCgl0172	-	hypothetical protein
173	 44.98	-2	187302..187610	+	102	19551426	-	NCgl0173	-	transcriptional regulator
174	 48.20	-1	187687..188103	+	138	19551427	-	NCgl0174	-	SAM-dependent methyltransferase
175	 49.65	-1	188297..188725	-	142	19551428	-	NCgl0175	-	hypothetical protein
176	 53.68	0	188744..189736	-	330	23308779	-	NCgl0176	-	transcriptional regulator
177	 43.21	-2	189920..190324	+	134	19551430	-	NCgl0177	-	hypothetical protein
178	 51.83	0	190700..192175	-	491	19551431	-	NCgl0178	-	major facilitator superfamily permease
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.