IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1211	 56.37	0	1324754..1326259	+	501	19552480	gatB	NCgl1211	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1212	 52.72	0	1326372..1327052	+	226	19552481	-	NCgl1212	-	dinucleotide-binding protein
1213	 53.04	0	1327161..1328246	+	361	19552482	-	NCgl1213	-	oxidoreductase
1214	 55.56	0	1328243..1328953	-	236	19552483	-	NCgl1214	-	lysine efflux permease
1215	 55.21	0	1329015..1329887	+	290	19552484	-	NCgl1215	-	chromosome replication initiation inhibitor protein
1216	 56.57	0	1329888..1330967	-	359	19552485	-	NCgl1216	-	glutathione S-transferase
1217	 53.39	0	1331186..1331878	+	230	19552486	-	NCgl1217	-	hypothetical protein
1218	 55.34	0	1331953..1333011	+	352	19552487	-	NCgl1218	-	hypothetical protein
1219	 59.07	+1	1333439..1335280	-	613	19552488	-	NCgl1219	-	dihydroxy-acid dehydratase
1220	 54.25	0	1335409..1336044	-	211	19552489	-	NCgl1220	-	hypothetical protein
1221	 55.24	0	1336092..1337693	-	533	19552490	-	NCgl1221	-	small-conductance mechanosensitive channel
1222	 57.15	0	1338131..1340011	+	626	19552491	-	NCgl1222	-	acetolactate synthase 1 catalytic subunit
1223	 56.65	0	1340025..1340543	+	172	19552492	ilvH	NCgl1223	-	acetolactate synthase 3 regulatory subunit
1224	 58.41	+1	1340724..1341740	+	338	19552493	-	NCgl1224	-	ketol-acid reductoisomerase
1225	 64.07	+2	1341957..1342457	-	166	19552494	-	NCgl1225	-	ABC-type transport system ATPase component
1226	 62.40	+2	1342072..1342680	+	202	23308837	-	NCgl1226	-	hypothetical protein
1227	 54.44	0	1342458..1342727	-	89	19552495	-	NCgl1227	-	ABC-type transport system ATPase component
1228	 55.59	0	1342791..1343675	-	294	19552496	-	NCgl1228	-	ABC-type transport system periplasmic component
1229	 53.10	0	1344033..1344467	+	144	19552498	-	NCgl1229	-	hypothetical protein
1230	 53.44	0	1344449..1344811	+	120	19552499	-	NCgl1230	-	hypothetical protein
1231	 50.72	0	1344935..1345423	+	162	19552500	-	NCgl1231	-	hypothetical protein
1232	 53.71	0	1345486..1346442	+	318	19552501	-	NCgl1232	-	Co/Zn/Cd efflux system component
1233	 53.85	0	1346458..1348275	+	605	19552502	-	NCgl1233	-	hypothetical protein
1234	 56.41	0	1348334..1350079	+	581	19552503	-	NCgl1234	-	hypothetical protein
1235	 55.49	0	1350855..1352447	+	530	19552504	-	NCgl1235	-	D-3-phosphoglycerate dehydrogenase
1236	 55.40	0	1352585..1353454	+	289	19552505	-	NCgl1236	-	hypothetical protein
1237	 57.18	0	1353489..1354511	+	340	19552506	-	NCgl1237	-	3-isopropylmalate dehydrogenase
1238	 49.22	-1	1354537..1355568	-	343	19552507	-	NCgl1238	-	ABC-type transport system periplasmic component
1239	 55.11	0	1355689..1357557	+	622	19552508	-	NCgl1239	-	signal-transduction protein
1240	 58.30	+1	1357557..1358213	+	218	19552509	-	NCgl1240	-	DNA polymerase III epsilon subunit
1241	 54.65	0	1358259..1359065	+	268	19552510	-	NCgl1241	-	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
1242	 56.77	0	1359067..1359672	+	201	19552511	-	NCgl1242	-	SAM-dependent methyltransferase
1243	 58.53	+1	1360165..1361295	-	376	19552512	-	NCgl1243	-	isochorismate synthase
1244	 56.61	0	1361370..1362851	+	493	19552513	gltX	NCgl1244	-	glutamyl-tRNA synthetase
1245	 58.33	+1	1362923..1363138	-	71	19552514	-	NCgl1245	-	transcriptional regulator
1246	 58.86	+1	1363139..1363612	-	157	19552515	-	NCgl1246	-	hypothetical protein
1247	 54.29	0	1363729..1364253	-	174	19552516	-	NCgl1247	-	hypothetical protein
1248	 56.67	0	1364337..1364786	-	149	19552517	-	NCgl1248	-	transcriptional regulator
1249	 56.21	0	1364875..1365180	-	101	19552518	-	NCgl1249	-	hypothetical protein
1250	 51.37	0	1365214..1365396	-	60	19552519	-	NCgl1250	-	hypothetical protein
1251	 43.12	-2	1368400..1369554	+	384	19552523	-	NCgl1251	-	hypothetical protein
1252	 51.68	0	1369551..1369877	+	108	19552524	-	NCgl1252	-	hypothetical protein
1253	 56.46	0	1369874..1371637	-	587	19552525	-	NCgl1253	-	thiamine biosynthesis protein ThiC
1254	 47.58	-1	1372805..1373134	+	109	19552526	-	NCgl1254	-	hypothetical protein
1255	 56.20	0	1373347..1375734	-	795	19552527	-	NCgl1255	-	glucan phosphorylase
1256	 54.72	0	1375930..1376088	-	52	19552528	-	NCgl1256	-	hypothetical protein
1257	 53.83	0	1376146..1377555	-	469	19552529	-	NCgl1257	-	Zn-dependent hydrolase
1258	 49.40	-1	1377663..1378415	-	250	23308838	-	NCgl1258	-	hypothetical protein
1259	 50.00	-1	1378463..1378942	-	159	19552531	-	NCgl1259	-	hypothetical protein
1260	 51.15	0	1379003..1379569	+	188	23308839	-	NCgl1260	-	guanosine polyphosphate pyrophosphohydrolase/synthetase
1261	 61.44	+1	1379552..1380259	-	235	19552533	-	NCgl1261	-	transcriptional regulator
1262	 59.41	+1	1380440..1381885	+	481	19552534	-	NCgl1262	-	isopropylmalate isomerase large subunit
1263	 57.91	0	1381902..1382495	+	197	19552535	leuD	NCgl1263	-	isopropylmalate isomerase small subunit
1264	 56.57	0	1382842..1383921	-	359	19552536	-	NCgl1264	-	NTP pyrophosphohydrolase
1265	 52.20	0	1383930..1384088	+	52	19552537	-	NCgl1265	-	hypothetical protein
1266	 56.86	0	1384130..1385128	+	332	19552538	gpsA	NCgl1266	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1267	 54.11	0	1385153..1386235	+	360	19552539	ddl	NCgl1267	-	D-alanyl-alanine synthetase A
1268	 61.77	+1	1386290..1387270	-	326	19552540	-	NCgl1268	-	hypothetical protein
1269	 56.87	0	1387338..1388327	+	329	19552541	-	NCgl1269	-	thiamine monophosphate kinase
1270	 54.67	0	1388327..1389076	+	249	19552542	-	NCgl1270	-	uracil-DNA glycosylase
1271	 57.26	0	1389208..1390791	+	527	23308840	-	NCgl1271	-	kinase
1272	 57.44	0	1390796..1392919	+	707	19552544	-	NCgl1272	-	RecG-like helicase
1273	 50.46	-1	1392939..1393154	+	71	19552545	-	NCgl1273	-	pyruvate carboxylase C-terminal domain-containing protein
1274	 59.32	+1	1393154..1393738	+	194	19552546	-	NCgl1274	-	N6-adenine-specific methylase
1275	 56.73	0	1393742..1394224	+	160	19552547	coaD	NCgl1275	-	phosphopantetheine adenylyltransferase
1276	 57.52	0	1394797..1395561	-	254	19552548	-	NCgl1276	-	ABC-type transporter, ATPase component
1277	 55.94	0	1395565..1396515	-	316	19552549	-	NCgl1277	-	ABC-type transporter, permease component
1278	 55.92	0	1396558..1397562	-	334	19552550	-	NCgl1278	-	ABC-type transporter, periplasmic component
1279	 51.60	0	1397662..1398471	+	269	19552551	-	NCgl1279	-	hypothetical protein
1280	 51.99	0	1398554..1399534	-	326	19552552	-	NCgl1280	-	hypothetical protein
1281	 47.43	-1	1400182..1400940	-	252	23308841	-	NCgl1281	-	integrase
1282	 42.58	-2	1400926..1401336	+	136	23308842	-	NCgl1282	-	hypothetical protein
1283	 44.98	-2	1401333..1402079	+	248	19552554	-	NCgl1283	-	hypothetical protein
1284	 56.09	0	1402272..1402706	+	144	19552555	-	NCgl1284	-	hypothetical protein
1285	 44.87	-2	1403128..1403994	+	288	19552556	-	NCgl1285	-	hypothetical protein
1286	 39.19	-2	1403997..1404218	+	73	19552557	-	NCgl1286	-	hypothetical protein
1287	 53.33	0	1404691..1404885	-	64	23308843	-	NCgl1287	-	hypothetical protein
1288	 44.60	-2	1404867..1405301	-	144	19552558	-	NCgl1288	-	hypothetical protein
1289	 46.50	-2	1405317..1406174	-	285	19552559	-	NCgl1289	-	hypothetical protein
1290	 41.13	-2	1407164..1407535	-	123	19552560	-	NCgl1290	-	hypothetical protein
1291	 44.03	-2	1407556..1407873	-	105	23308844	-	NCgl1291	-	hypothetical protein
1292	 46.08	-2	1408250..1408453	+	67	19552561	-	NCgl1292	-	hypothetical protein
1293	 49.47	-1	1409425..1409802	-	125	19552562	-	NCgl1293	-	hypothetical protein
1294	 44.58	-2	1410061..1411011	-	316	19552563	-	NCgl1294	-	hypothetical protein
1295	 45.63	-2	1411116..1411424	-	102	19552564	-	NCgl1295	-	hypothetical protein
1296	 49.74	-1	1411434..1412000	-	188	19552565	-	NCgl1296	-	hypothetical protein
1297	 47.56	-1	1412351..1412575	+	74	23308845	-	NCgl1297	-	hypothetical protein
1298	 54.42	0	1412623..1412916	-	97	19552566	-	NCgl1298	-	hypothetical protein
1299	 55.43	0	1413820..1416462	+	880	19552567	-	NCgl1299	-	DNA polymerase I
1300	 55.53	0	1416459..1417859	-	466	19552568	-	NCgl1300	-	major facilitator superfamily permease
1301	 52.35	0	1417896..1418873	+	325	19552569	-	NCgl1301	-	transcriptional regulator
1302	 53.31	0	1418876..1419751	+	291	19552570	-	NCgl1302	-	aldo/keto reductase
1303	 56.28	0	1420068..1420847	-	259	19552571	-	NCgl1303	-	SAM-dependent methyltransferase
1304	 58.93	+1	1421099..1422559	+	486	19552573	rpsA	NCgl1304	-	30S ribosomal protein S1
1305	 52.19	0	1423217..1425268	+	683	19552574	-	NCgl1305	-	phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific
1306	 52.40	0	1425279..1425881	+	200	19552575	-	NCgl1306	-	dephospho-CoA kinase
1307	 48.14	-1	1426257..1427357	+	366	23308846	-	NCgl1307	-	hypothetical protein
1308	 50.91	0	1427373..1427810	-	145	19552577	-	NCgl1308	-	hypothetical protein
1309	 56.44	0	1428221..1429159	-	312	19552579	-	NCgl1309	-	inosine-uridine nucleoside N-ribohydrolase
1310	 56.20	0	1429191..1430642	-	483	19552580	-	NCgl1310	-	major facilitator superfamily permease
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.