IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
47	 58.31	0	43694..45715	-	673	38232689	pknB	DIP0053	-	serine/threonine-protein kinase
48	 60.96	+1	45712..47217	-	501	38232690	pknA	DIP0054	-	serine/threonine-protein kinase
49	 58.93	+1	47230..48690	-	486	38232691	pbpA	DIP0055	-	putative secreted penicillin-binding protein
50	 58.89	+1	48687..50036	-	449	38232692	ftsW	DIP0056	-	cell division protein
51	 58.57	+1	50037..51494	-	485	38232693	-	DIP0057	-	putative phosphoprotein phosphatase
52	 52.35	0	51491..51979	-	162	38232694	-	DIP0058	-	hypothetical protein
53	 53.63	0	51993..52859	-	288	38232695	-	DIP0059	-	hypothetical protein
54	 66.58	+2	53813..56047	-	744	38232696	-	DIP0061	-	putative cation-transporting ATPase
55	 64.83	+2	56099..56425	-	108	38232697	-	DIP0062	-	putative heavy metal-associated transport protein
56	 65.87	+2	56540..57667	-	375	38232698	-	DIP0063	-	putative two-component system sensor protein
57	 66.25	+2	57664..58386	-	240	38232699	-	DIP0064	-	putative two-component system response regulator
58	 60.38	+1	58730..59365	+	211	38232700	-	DIP0066	-	hypothetical protein
59	 64.17	+2	59436..60917	+	493	38232701	-	DIP0067	-	putative exported multicopper oxidase
60	 59.87	+1	60895..61203	-	102	38232702	-	DIP0068	-	hypothetical protein
61	 50.00	0	62898..63353	-	151	38232703	-	DIP0071	-	hypothetical protein
62	 46.71	-1	63350..63850	-	166	38232704	-	DIP0072	-	hypothetical protein
63	 46.21	-1	63823..64218	-	131	38232705	-	DIP0073	-	hypothetical protein
64	 43.26	-2	64253..64393	-	46	38232706	-	DIP0074	-	hypothetical protein
65	 58.37	0	64602..66083	+	493	38232707	-	DIP0075	-	hypothetical protein
66	 56.18	0	66426..66797	+	123	38232708	-	DIP0076	-	hypothetical protein
67	 55.18	0	66921..67721	+	266	38232709	-	DIP0077	-	hypothetical protein
68	 57.18	0	67740..68582	+	280	38232710	-	DIP0078	-	hypothetical protein
69	 55.37	0	68563..69828	+	421	38232711	-	DIP0079	-	hypothetical protein
70	 47.73	-1	69994..70125	+	43	38232712	-	DIP0080	-	hypothetical protein
71	 52.22	0	70294..70473	+	59	38232713	-	DIP0081	-	hypothetical protein
72	 45.77	-1	70504..70929	+	141	38232714	-	DIP0082	-	hypothetical protein
73	 48.23	-1	70997..71137	+	46	38232715	-	DIP0083	-	hypothetical protein
74	 44.96	-1	71572..71700	+	42	38232716	-	DIP0084	-	hypothetical protein
75	 46.90	-1	71845..72360	-	171	38232717	-	DIP0085	-	hypothetical protein
76	 49.33	0	72365..72664	-	99	38232718	-	DIP0086	-	putative regulatory protein
77	 59.95	+1	73648..74943	-	431	38232719	-	DIP0089	-	hypothetical protein
78	 56.27	0	75080..75781	-	233	38232720	-	DIP0090	-	ABC transport system ATP-binding protein
79	 58.03	0	75820..76479	-	219	38232721	-	DIP0091	-	putative two-component system response regulator
80	 55.85	0	76479..77708	-	409	38232722	-	DIP0092	-	putative two component system sensor kinase
81	 55.56	0	77804..78145	-	113	38232723	-	DIP0093	-	hypothetical protein
82	 47.86	-1	78214..78330	-	38	38232724	-	DIP0094	-	hypothetical protein
83	 60.15	+1	78414..79088	-	224	38232725	opuBB	DIP0095	-	choline transport system permease protein
84	 60.75	+1	79095..79736	-	213	38232726	opuBD	DIP0096	-	choline transport system permease protein
85	 58.36	0	79727..80557	-	276	38232727	opuBA	DIP0097	-	choline transport system ATP-binding protein
86	 57.14	0	80567..81175	-	202	38232728	-	DIP0098	-	hypothetical protein
87	 55.56	0	81172..81756	-	194	38232729	-	DIP0099	-	putative RNA polymerase sigma factor
88	 51.63	0	81783..82181	-	132	38232730	-	DIP0100	-	hypothetical protein
89	 56.55	0	82259..83899	+	546	38232731	-	DIP0101	-	hypothetical protein
90	 55.34	0	83969..84745	-	258	38232732	tipA	DIP0102	-	transcriptional activator
91	 48.21	-1	84797..84964	-	55	38232733	-	DIP0103	-	hypothetical protein
92	 62.66	+1	84975..86321	-	448	38232734	-	DIP0104	-	putative peptidase
93	 57.93	0	86342..87394	+	350	38232735	bioB	DIP0105	-	biotin synthase
94	 62.84	+1	87394..87654	+	86	38232736	-	DIP0106	-	hypothetical protein
95	 52.78	0	88041..89228	+	395	38232737	irp6A	DIP0108	-	ferrisiderophore receptor Irp6A
96	 58.91	+1	89229..90272	+	347	38232738	irp6B	DIP0109	-	membrane protein permease Irp6B
97	 58.63	+1	90274..91032	+	252	38232739	irp6C	DIP0110	-	ATP-binding protein Irp6C
98	 57.00	0	91122..92600	+	492	38232740	-	DIP0111	-	putative lipoprotein
99	 52.70	0	92618..93025	+	135	38232741	-	DIP0112	-	hypothetical protein
100	 61.97	+1	93040..94380	+	446	38232742	-	DIP0113	-	putative riboflavin biosynthesis protein
101	 54.76	0	94403..94822	+	139	38232743	-	DIP0114	-	hypothetical protein
102	 55.90	0	94809..95876	-	355	38232744	-	DIP0115	-	hypothetical protein
103	 60.21	+1	96123..96881	-	252	38232745	-	DIP0116	-	hypothetical protein
104	 57.60	0	96976..97758	-	260	38232746	-	DIP0117	-	putative lipase
105	 62.69	+1	97855..98433	+	192	38232747	-	DIP0118	-	putative dehydrogenase
106	 48.16	-1	98438..100177	-	579	38232748	-	DIP0119	-	hypothetical protein
107	 54.07	0	100588..100722	+	44	38232749	-	DIP0121	-	putative transposon (partial)
108	 55.32	0	101238..101792	+	184	38232750	-	DIP0122	-	putative siderophore binding protein
109	 62.06	+1	101789..102787	-	332	38232751	-	DIP0123	-	hypothetical protein
110	 62.95	+1	103155..104525	+	456	38232752	-	DIP0124	-	hypothetical protein
111	 55.80	0	104676..105761	+	361	38232753	-	DIP0125	-	hypothetical protein
112	 60.53	+1	105773..107386	+	537	38232754	-	DIP0126	-	hypothetical protein
113	 53.93	0	107390..107860	+	156	38232755	-	DIP0127	-	MarR family regulatory protein
114	 58.59	+1	107838..108890	-	350	38232756	-	DIP0128	-	hypothetical protein
115	 57.95	0	108895..109479	-	194	38232757	-	DIP0129	-	hypothetical protein
116	 60.18	+1	109478..110248	+	256	38232758	-	DIP0130	-	hypothetical protein
117	 61.76	+1	110238..112583	-	781	38232759	-	DIP0131	-	putative ATP-dependent helicase
118	 58.07	0	112573..113142	-	189	38232760	-	DIP0132	-	putative sugar acetyltransferase
119	 59.65	+1	113144..113884	+	246	38232761	-	DIP0133	-	putative DNA repair protein
120	 58.16	0	113937..114524	+	195	38232762	-	DIP0134	-	putative DNA-repair protein
121	 54.60	0	114529..115257	+	242	38232763	-	DIP0135	-	putative oxidoreductase
122	 58.89	+1	115518..116276	+	252	38232764	-	DIP0136	-	putative lipoprotein
123	 50.00	0	116460..116687	-	75	38232765	-	DIP0137	-	hypothetical protein
124	 50.79	0	116920..117045	-	41	38232766	-	DIP0138	-	hypothetical protein
125	 44.24	-2	117050..117379	-	109	38232767	-	DIP0139	-	hypothetical protein
126	 50.90	0	117622..117900	-	92	38232768	-	DIP0140	-	hypothetical protein
127	 47.22	-1	118089..118232	+	47	38232769	-	DIP0141	-	hypothetical protein
128	 57.93	0	118306..118980	+	224	38232770	-	DIP0142	-	hypothetical protein
129	 55.05	0	120068..120265	-	65	38232771	-	DIP0145	-	hypothetical protein
130	 44.36	-2	120487..120867	+	126	38232772	-	DIP0146	-	putative integral membrane protein
131	 47.22	-1	120867..120974	+	35	38232773	-	DIP0147	-	putative lipoprotein
132	 56.67	0	121423..121722	+	99	38232774	-	DIP0149	-	hypothetical protein
133	 58.30	0	121722..122546	+	274	38232775	-	DIP0150	-	hypothetical protein
134	 62.42	+1	122552..122857	+	101	38232776	-	DIP0151	-	hypothetical protein
135	 60.15	+1	122867..123787	-	306	38232777	-	DIP0152	-	hypothetical protein
136	 59.33	+1	123927..124553	+	208	38232778	-	DIP0153	-	hypothetical protein
137	 57.76	0	124561..126570	-	669	38232779	-	DIP0154	-	putative endopeptidase
138	 56.40	0	126599..127231	+	210	38232780	-	DIP0155	-	hypothetical protein
139	 57.33	0	127228..128148	+	306	38232781	-	DIP0156	-	hypothetical protein
140	 57.10	0	128138..129046	+	302	38232782	-	DIP0157	-	hypothetical protein
141	 57.53	0	129067..129504	-	145	38232783	-	DIP0158	-	hypothetical protein
142	 60.01	+1	129730..133155	-	1141	38232784	-	DIP0159	-	putative transferase
143	 56.12	0	133148..135232	-	694	38232785	-	DIP0160	-	hypothetical protein
144	 59.32	+1	135343..136104	-	253	38232786	-	DIP0161	-	short chain dehydrogenase
145	 59.44	+1	136124..137590	-	488	38232787	-	DIP0162	-	putative oxidoreductase, FAD-binding
146	 53.41	0	137707..137955	-	82	38232788	-	DIP0163	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.