IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
824	 52.29	0	841745..843490	+	581	38233466	betP	DIP0869	-	glycine betaine transporter
825	 53.07	0	843569..845032	+	487	38233467	-	DIP0870	-	hypothetical protein
826	 55.82	0	845142..846017	+	291	38233468	-	DIP0871	-	hypothetical protein
827	 53.90	0	846041..847873	+	610	38233469	metG	DIP0872	-	methionyl-tRNA synthetase
828	 52.87	0	847895..848749	+	284	38233470	-	DIP0873	-	hypothetical protein
829	 53.37	0	848894..850051	+	385	38233471	-	DIP0874	-	hypothetical protein
830	 55.86	0	850103..850990	+	295	38233472	ksgA	DIP0875	-	dimethyladenosine transferase
831	 58.87	+1	850987..851922	+	311	38233473	-	DIP0876	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
832	 58.04	0	851922..853730	+	602	38233474	-	DIP0877	-	ABC transporter ATP-binding protein
833	 47.53	-1	853749..854072	+	107	38233475	-	DIP0878	-	hypothetical protein
834	 58.21	0	854176..854565	+	129	38233476	-	DIP0879	-	hypothetical protein
835	 58.70	+1	854590..855129	+	179	38233477	-	DIP0880	-	RNA polymerase ECF-subfamily sigma factor
836	 55.95	0	855138..856313	+	391	38233478	-	DIP0881	-	hypothetical protein
837	 53.64	0	856347..857252	+	301	38233479	-	DIP0882	-	putative RNA polymerase sigma factor
838	 56.44	0	857329..858042	-	237	38233480	-	DIP0883	-	hypothetical protein
839	 56.30	0	858062..858862	-	266	38233481	-	DIP0884	-	hypothetical protein
840	 55.65	0	858962..860014	+	350	38233482	-	DIP0885	-	enoyl-CoA hydratase
841	 56.75	0	860011..861270	-	419	38233483	-	DIP0886	-	hypothetical protein
842	 48.89	-1	861306..861530	-	74	38233484	-	DIP0887	-	hypothetical protein
843	 53.87	0	861538..861912	-	124	38233485	-	DIP0888	-	TetR family transcriptional regulatory protein (partial)
844	 37.50	-2	862009..862128	-	39	38233486	-	DIP0889	-	hypothetical protein
845	 51.85	0	862236..862532	-	98	38233487	-	DIP0890	-	hypothetical protein
846	 54.72	0	862908..864338	-	476	38233488	-	DIP0892	-	glyceraldehyde-3-phosphate dehydrogenase
847	 55.05	0	864602..865255	+	217	38233489	-	DIP0893	-	hypothetical protein
848	 53.43	0	865283..865486	+	67	38233490	-	DIP0894	-	hypothetical protein
849	 54.92	0	865500..867134	-	544	38233491	-	DIP0895	-	putative peptide chain release factor 3
850	 56.17	0	867146..867955	-	269	38233492	-	DIP0896	-	putative oxydoreductase
851	 55.80	0	867987..868529	-	180	38233493	-	DIP0897	-	peptidyl-tRNA hydrolase
852	 51.52	0	868809..869369	+	186	38233494	-	DIP0898	-	hypothetical protein
853	 51.74	0	869457..869972	+	171	38233495	-	DIP0899	-	hypothetical protein
854	 49.55	0	870146..870700	-	184	38233496	-	DIP0900	-	peptidyl-tRNA hydrolase
855	 56.15	0	870759..871376	-	205	38233497	-	DIP0901	-	50S ribosomal protein L25/general stress protein Ctc
856	 59.12	+1	871597..873411	-	604	38233498	-	DIP0902	-	putative hydrolase
857	 60.75	+1	873535..874515	-	326	38233499	prsA	DIP0903	-	ribose-phosphate pyrophosphokinase
858	 57.25	0	874524..875978	-	484	38233500	-	DIP0904	-	putative UDP-N-acetylglucosamine pyrophosphorylase
859	 57.86	0	876064..876960	-	298	38233501	-	DIP0905	-	LysR family transcriptional regulator
860	 56.36	0	877048..878124	+	358	38233502	-	DIP0906	-	hypothetical protein
861	 54.73	0	878149..879078	+	309	38233503	-	DIP0907	-	putative reductase
862	 56.73	0	879104..880714	+	536	38233504	-	DIP0908	-	ABC transporter
863	 55.31	0	880715..882502	+	595	38233505	-	DIP0909	-	ABC transporter ATP-binding protein
864	 53.09	0	882775..883422	+	215	38233506	-	DIP0910	-	TetR family transcriptional regulator
865	 55.28	0	883472..887266	+	1264	38233507	mfd	DIP0911	-	transcription-repair coupling factor
866	 53.05	0	887323..887748	+	141	38233508	-	DIP0912	-	hypothetical protein
867	 53.00	0	887751..888233	+	160	38233509	-	DIP0913	-	hypothetical protein
868	 55.38	0	888244..889740	-	498	38233510	lysI	DIP0914	-	L-lysine transport protein
869	 52.50	0	889839..890537	+	232	38233511	-	DIP0915	-	hypothetical protein
870	 55.98	0	890549..891325	+	258	38233512	-	DIP0916	-	hypothetical protein
871	 57.28	0	891487..892764	+	425	38233513	eno	DIP0917	-	phosphopyruvate hydratase
872	 52.43	0	892885..893418	+	177	38233514	-	DIP0918	-	hypothetical protein
873	 57.67	0	893459..894025	+	188	38233515	-	DIP0919	-	hypothetical protein
874	 53.84	0	894022..894972	+	316	38233516	-	DIP0920	-	hypothetical protein
875	 49.69	0	895352..895675	+	107	38233517	-	DIP0921	-	hypothetical protein
876	 53.08	0	895787..896794	+	335	38233518	-	DIP0922	-	AraC family transcriptional regulator
877	 54.27	0	896926..897756	+	276	38233519	-	DIP0923	-	hypothetical protein
878	 51.19	0	897826..898245	-	139	38233520	-	DIP0924	-	hypothetical protein
879	 56.90	0	898245..898766	-	173	38233521	greA	DIP0925	-	transcription elongation factor GreA
880	 54.06	0	898944..899411	-	155	38233522	-	DIP0926	-	hypothetical protein
881	 51.91	0	899713..900600	+	295	38233523	-	DIP0927	-	hypothetical protein
882	 52.63	0	900655..900996	+	113	38233524	-	DIP0928	-	hypothetical protein
883	 52.88	0	901021..901818	+	265	38233525	-	DIP0929	-	putative undecaprenyl pyrophosphate synthetase
884	 53.69	0	901865..902365	+	166	38233526	-	DIP0930	-	hypothetical protein
885	 53.61	0	902362..903288	-	308	38233527	coaA	DIP0931	-	pantothenate kinase
886	 55.43	0	903498..904787	+	429	38233528	glyA	DIP0932	-	serine hydroxymethyltransferase
887	 55.07	0	904858..905202	-	114	38233529	-	DIP0933	-	hypothetical protein
888	 55.51	0	905267..905947	+	226	38233530	-	DIP0934	-	hypothetical protein
889	 52.20	0	906029..906595	+	188	38233531	-	DIP0935	-	putative phosphinothricin N-acetyltransferase
890	 53.13	0	906600..908165	-	521	38233532	-	DIP0936	-	putative drug transport membrane protein
891	 50.15	0	908167..908814	-	215	38233533	-	DIP0937	-	TetR family transcriptional regulator
892	 59.26	+1	908959..910362	-	467	38233534	fumC	DIP0938	-	fumarate hydratase
893	 57.42	0	910620..911636	-	338	38233535	glpX	DIP0939	-	fructose 1,6-bisphosphatase II
894	 54.70	0	911934..912518	+	194	38233536	-	DIP0940	-	hypothetical protein
895	 51.55	0	912528..912785	-	85	38233537	xseB	DIP0941	-	exodeoxyribonuclease VII small subunit
896	 55.96	0	912814..914055	-	413	38233538	xseA	DIP0942	-	exodeoxyribonuclease VII large subunit
897	 55.79	0	914162..915163	+	333	38233539	ispH	DIP0943	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
898	 53.79	0	915227..916018	-	263	38233540	-	DIP0944	-	hypothetical protein
899	 55.46	0	916085..917503	-	472	38233541	-	DIP0945	-	hypothetical protein
900	 51.46	0	917593..917763	-	56	38233542	-	DIP0946	-	hypothetical protein
901	 53.52	0	917763..919412	-	549	38233543	-	DIP0947	-	putative sodium-dependent ABC transport system membrane protein
902	 53.50	0	919766..920851	+	361	38233544	-	DIP0948	-	translation-associated GTPase
903	 53.77	0	920928..921842	-	304	38233545	-	DIP0949	-	ABC transporter
904	 55.48	0	921923..922816	+	297	38233546	-	DIP0950	-	2-dehydropantoate 2-reductase
905	 54.04	0	922958..923551	+	197	38233547	-	DIP0951	-	hypothetical protein
906	 58.26	0	923566..924588	-	340	38233548	-	DIP0952	-	putative chloride channel related membrane protein
907	 53.70	0	924885..926264	+	459	38233549	-	DIP0953	-	ABC transporter ATP-binding protein
908	 57.80	0	926261..927016	+	251	38233550	-	DIP0954	-	ABC transporter
909	 57.30	0	927013..927471	+	152	38233551	-	DIP0955	-	hypothetical protein
910	 52.52	0	927733..929322	+	529	38233552	-	DIP0956	-	putative peptide transport system secreted protein
911	 51.56	0	929413..930339	+	308	38233553	-	DIP0957	-	putative peptide transport system membrane protein
912	 55.14	0	930332..931285	+	317	38233554	-	DIP0958	-	putative peptide transport system membrane protein
913	 54.55	0	931288..932970	+	560	38233555	-	DIP0959	-	putative peptide ABC transport system ATP-binding protein
914	 45.21	-1	933397..933699	+	100	38233556	-	DIP0960	-	hypothetical protein
915	 45.26	-1	933702..934397	+	231	38233557	-	DIP0961	-	ABC transporter ATP-binding protein
916	 46.39	-1	934399..935547	+	382	38233558	-	DIP0962	-	hypothetical protein
917	 39.80	-2	935552..936139	+	195	38233559	-	DIP0963	-	hypothetical protein
918	 63.37	+2	937248..937976	-	242	38233560	-	DIP0964	-	putative protease
919	 56.23	0	937977..938321	-	114	38233561	arsC	DIP0965	-	arsenate reductase
920	 55.81	0	938318..938851	-	177	38233562	-	DIP0966	-	hypothetical protein
921	 59.68	+1	938855..939541	-	228	38233563	-	DIP0967	-	hypothetical protein
922	 57.09	0	939899..941809	+	636	38233564	-	DIP0969	-	putative GTP-binding elongation factor
923	 54.64	0	941820..943349	+	509	38233565	-	DIP0970	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.