IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
760	 62.65	+1	780837..781160	-	107	38233402	-	DIP0803	-	hypothetical protein
761	 62.67	+1	781172..783724	-	850	38233403	-	DIP0804	-	hypothetical protein
762	 58.58	+1	783728..785731	-	667	38233404	-	DIP0805	-	putative DNA methylase
763	 42.25	-2	786230..786958	+	242	38233405	-	DIP0806	-	hypothetical protein
764	 45.43	-1	786955..787392	+	145	38233406	-	DIP0807	-	hypothetical protein
765	 64.78	+2	787574..787945	-	123	38233407	-	DIP0808	-	hypothetical protein
766	 62.96	+1	787932..788174	-	80	38233408	-	DIP0809	-	hypothetical protein
767	 66.13	+2	788227..788601	-	124	38233409	-	DIP0810	-	hypothetical protein
768	 63.69	+2	788588..788956	-	122	38233410	-	DIP0811	-	hypothetical protein
769	 65.43	+2	788946..789917	-	323	38233411	-	DIP0812	-	hypothetical protein
770	 59.52	+1	789916..790419	+	167	38233412	-	DIP0813	-	hypothetical protein
771	 67.44	+2	790442..790960	+	172	38233413	-	DIP0816	-	hypothetical protein
772	 64.41	+2	790953..792017	+	354	38233414	-	DIP0817	-	putative phage integrase
773	 61.95	+1	792350..792688	-	112	38233415	-	DIP0818	-	hypothetical protein
774	 60.57	+1	792701..793471	+	256	38233416	-	DIP0819	-	hypothetical protein
775	 62.90	+1	793522..795300	+	592	38233417	-	DIP0820	-	hypothetical protein
776	 47.45	-1	795749..796081	+	110	38233418	-	DIP0821	-	hypothetical protein
777	 56.44	0	796088..796840	+	250	38233419	-	DIP0822	-	precorrin 6A synthase
778	 54.65	0	796859..797116	-	85	38233420	-	DIP0823	-	hypothetical protein
779	 60.32	+1	797137..797640	-	167	38233421	-	DIP0824	-	putative folate reductase
780	 53.26	0	797640..798452	-	270	38233422	thyA	DIP0825	-	thymidylate synthase
781	 60.21	+1	798546..799304	-	252	38233423	-	DIP0826	-	putative sulfite synthesis related protein
782	 56.99	0	799343..804157	+	1604	38233424	-	DIP0827	-	putative ATP-dependent helicase
783	 57.07	0	804154..804705	-	183	38233425	-	DIP0828	-	putative DNA repair protein
784	 53.66	0	804836..805642	+	268	38233426	-	DIP0829	-	putative endonuclease
785	 51.78	0	805625..807250	-	541	38233427	-	DIP0830	-	hypothetical protein
786	 49.03	-1	807364..807777	+	137	38233428	-	DIP0831	-	hypothetical protein
787	 54.44	0	807862..809505	-	547	38233429	pgi	DIP0832	-	glucose-6-phosphate isomerase
788	 56.30	0	809708..811192	+	494	38233430	-	DIP0833	-	putative succinate-semialdehyde dehydrogenase
789	 56.16	0	811189..811521	-	110	38233431	-	DIP0834	-	hypothetical protein
790	 50.50	0	811671..814088	+	805	38233432	pcrA	DIP0835	-	ATP-dependent DNA helicase
791	 54.53	0	814166..814882	-	238	38233433	-	DIP0836	-	hypothetical protein
792	 52.10	0	815288..816742	+	484	38233434	-	DIP0837	-	hypothetical protein
793	 53.85	0	816768..817391	+	207	38233435	purN	DIP0838	-	phosphoribosylglycinamide formyltransferase
794	 57.54	0	817381..818958	+	525	38233436	purH	DIP0839	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
795	 54.17	0	819223..819702	+	159	38233437	-	DIP0840	-	hypothetical protein
796	 51.70	0	819871..820371	+	166	38233438	-	DIP0841	-	hypothetical protein
797	 55.38	0	820408..820974	+	188	38233439	-	DIP0842	-	hypothetical protein
798	 48.95	-1	820987..822363	-	458	38233440	-	DIP0843	-	putative transposase
799	 53.77	0	822365..822775	+	136	38233441	-	DIP0844	-	hypothetical protein
800	 54.68	0	822822..823655	+	277	38233442	-	DIP0845	-	putative citrate lyase
801	 54.56	0	823652..824320	-	222	38233443	amtR	DIP0846	-	TetR family regulatory protein
802	 55.46	0	824445..825479	-	344	38233444	-	DIP0847	-	hypothetical protein
803	 57.83	0	825552..825800	-	82	38233445	rpsR	DIP0848	-	30S ribosomal protein S18
804	 59.15	+1	825815..826120	-	101	38233446	rpsN	DIP0849	-	30S ribosomal protein S14
805	 52.12	0	826124..826288	-	54	38233447	rpmG	DIP0850	-	50S ribosomal protein L33
806	 59.07	+1	826292..826528	-	78	38233448	rpmB	DIP0851	-	50S ribosomal protein L28
807	 54.31	0	826998..827264	+	88	38233449	rpmE2	DIP0852	-	50S ribosomal protein L31 type B
808	 54.60	0	827283..827456	+	57	38233450	rpmF	DIP0853	-	50S ribosomal protein L32
809	 55.12	0	827685..828377	+	230	38233451	-	DIP0854	-	putative two component system response regulator
810	 52.85	0	828428..829918	+	496	38233452	-	DIP0855	-	putative two component system sensor kinase
811	 55.87	0	830008..831294	+	428	38233453	-	DIP0856	-	putative serine protease
812	 54.93	0	831333..831920	+	195	38233454	-	DIP0857	-	putative molybdopterin biosynthesis protein
813	 50.00	0	831950..832135	+	61	38233455	-	DIP0858	-	hypothetical protein
814	 52.35	0	832222..832626	-	134	38233456	mscL	DIP0859	-	large-conductance mechanosensitive channel
815	 56.43	0	832733..833416	-	227	38233457	-	DIP0860	-	hypothetical protein
816	 56.41	0	833432..834016	-	194	38233458	-	DIP0861	-	hypothetical protein
817	 53.53	0	834145..835065	+	306	38233459	-	DIP0862	-	putative urydyltransferase
818	 56.79	0	835162..836427	+	421	38233460	-	DIP0863	-	putative molybdopterin biosynthesis protein
819	 53.70	0	836463..837125	+	220	38233461	-	DIP0864	-	putative acetyltransferase
820	 57.08	0	837252..838388	+	378	38233462	-	DIP0865	-	hypothetical protein
821	 53.62	0	838431..838844	+	137	38233463	-	DIP0866	-	hypothetical protein
822	 53.09	0	838831..839493	+	220	38233464	-	DIP0867	-	hypothetical protein
823	 56.73	0	839502..841211	-	569	38233465	-	DIP0868	-	hypothetical protein
824	 52.29	0	841745..843490	+	581	38233466	betP	DIP0869	-	glycine betaine transporter
825	 53.07	0	843569..845032	+	487	38233467	-	DIP0870	-	hypothetical protein
826	 55.82	0	845142..846017	+	291	38233468	-	DIP0871	-	hypothetical protein
827	 53.90	0	846041..847873	+	610	38233469	metG	DIP0872	-	methionyl-tRNA synthetase
828	 52.87	0	847895..848749	+	284	38233470	-	DIP0873	-	hypothetical protein
829	 53.37	0	848894..850051	+	385	38233471	-	DIP0874	-	hypothetical protein
830	 55.86	0	850103..850990	+	295	38233472	ksgA	DIP0875	-	dimethyladenosine transferase
831	 58.87	+1	850987..851922	+	311	38233473	-	DIP0876	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
832	 58.04	0	851922..853730	+	602	38233474	-	DIP0877	-	ABC transporter ATP-binding protein
833	 47.53	-1	853749..854072	+	107	38233475	-	DIP0878	-	hypothetical protein
834	 58.21	0	854176..854565	+	129	38233476	-	DIP0879	-	hypothetical protein
835	 58.70	+1	854590..855129	+	179	38233477	-	DIP0880	-	RNA polymerase ECF-subfamily sigma factor
836	 55.95	0	855138..856313	+	391	38233478	-	DIP0881	-	hypothetical protein
837	 53.64	0	856347..857252	+	301	38233479	-	DIP0882	-	putative RNA polymerase sigma factor
838	 56.44	0	857329..858042	-	237	38233480	-	DIP0883	-	hypothetical protein
839	 56.30	0	858062..858862	-	266	38233481	-	DIP0884	-	hypothetical protein
840	 55.65	0	858962..860014	+	350	38233482	-	DIP0885	-	enoyl-CoA hydratase
841	 56.75	0	860011..861270	-	419	38233483	-	DIP0886	-	hypothetical protein
842	 48.89	-1	861306..861530	-	74	38233484	-	DIP0887	-	hypothetical protein
843	 53.87	0	861538..861912	-	124	38233485	-	DIP0888	-	TetR family transcriptional regulatory protein (partial)
844	 37.50	-2	862009..862128	-	39	38233486	-	DIP0889	-	hypothetical protein
845	 51.85	0	862236..862532	-	98	38233487	-	DIP0890	-	hypothetical protein
846	 54.72	0	862908..864338	-	476	38233488	-	DIP0892	-	glyceraldehyde-3-phosphate dehydrogenase
847	 55.05	0	864602..865255	+	217	38233489	-	DIP0893	-	hypothetical protein
848	 53.43	0	865283..865486	+	67	38233490	-	DIP0894	-	hypothetical protein
849	 54.92	0	865500..867134	-	544	38233491	-	DIP0895	-	putative peptide chain release factor 3
850	 56.17	0	867146..867955	-	269	38233492	-	DIP0896	-	putative oxydoreductase
851	 55.80	0	867987..868529	-	180	38233493	-	DIP0897	-	peptidyl-tRNA hydrolase
852	 51.52	0	868809..869369	+	186	38233494	-	DIP0898	-	hypothetical protein
853	 51.74	0	869457..869972	+	171	38233495	-	DIP0899	-	hypothetical protein
854	 49.55	0	870146..870700	-	184	38233496	-	DIP0900	-	peptidyl-tRNA hydrolase
855	 56.15	0	870759..871376	-	205	38233497	-	DIP0901	-	50S ribosomal protein L25/general stress protein Ctc
856	 59.12	+1	871597..873411	-	604	38233498	-	DIP0902	-	putative hydrolase
857	 60.75	+1	873535..874515	-	326	38233499	prsA	DIP0903	-	ribose-phosphate pyrophosphokinase
858	 57.25	0	874524..875978	-	484	38233500	-	DIP0904	-	putative UDP-N-acetylglucosamine pyrophosphorylase
859	 57.86	0	876064..876960	-	298	38233501	-	DIP0905	-	LysR family transcriptional regulator
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.