IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
695	 52.42	0	706446..707147	-	233	38233337	-	DIP0731	-	hypothetical protein
696	 57.54	0	707195..707698	-	167	38233338	-	DIP0732	-	hypothetical protein
697	 53.17	0	707871..710834	+	987	38233339	-	DIP0733	-	hypothetical protein
698	 58.42	+1	711318..711887	-	189	38233340	-	DIP0734	-	hypothetical protein
699	 52.06	0	711917..712231	-	104	38233341	-	DIP0735	-	hypothetical protein
700	 59.55	+1	712417..713427	-	336	38233342	-	DIP0736	-	putative protease
701	 52.66	0	713430..714386	-	318	38233343	-	DIP0737	-	hypothetical protein
702	 55.95	0	714642..714809	+	55	38233344	-	DIP0738	-	hypothetical protein
703	 53.98	0	715065..716546	+	493	38233345	pycB	DIP0739	-	oxaloacetate decarboxylase
704	 55.62	0	716559..718115	+	518	38233346	mmdA	DIP0740	-	methylmalonyl-CoA decarboxylase, alpha-subunit
705	 53.79	0	718129..718392	+	87	38233347	-	DIP0741	-	hypothetical protein
706	 57.18	0	718417..718785	+	122	38233348	-	DIP0742	-	putative decarboxylase
707	 53.35	0	718856..720079	+	407	38233349	-	DIP0743	-	hypothetical protein
708	 56.91	0	720098..720886	-	262	38233350	-	DIP0744	-	hypothetical protein
709	 55.33	0	720943..721815	-	290	38233351	-	DIP0745	-	hypothetical protein
710	 53.87	0	721938..723047	+	369	38233352	prfB	DIP0746	-	peptide chain release factor 2
711	 52.22	0	723044..724642	-	532	38233353	-	DIP0747	-	hypothetical protein
712	 52.61	0	724821..725510	+	229	38233354	ftsE	DIP0748	-	cell division ATP-binding protein
713	 51.38	0	725527..726429	+	300	38233355	-	DIP0749	-	putative cell division protein
714	 50.61	0	726536..727027	+	163	38233356	smpB	DIP0750	-	SsrA-binding protein
715	 52.08	0	727065..727256	+	63	38233357	-	DIP0751	-	hypothetical protein
716	 48.99	-1	727618..728997	+	459	38233358	-	DIP0752	-	IS element transposase
717	 47.07	-1	729107..732040	+	977	38233359	-	DIP0753	-	putative lantibiotic modifying enzyme
718	 46.65	-1	732028..734160	+	710	38233360	-	DIP0754	-	lantibiotic ABC transporter membrane protein
719	 47.21	-1	734160..735038	+	292	38233361	-	DIP0755	-	lantibiotic ABC transporter ATP-binding protein
720	 43.23	-2	735038..735835	+	265	38233362	-	DIP0756	-	lantibiotic ABC transporter membrane protein
721	 54.68	0	736001..736267	-	88	38233363	-	DIP0757	-	IS element transposase (partial)
722	 52.81	0	736323..736553	-	76	38233364	-	DIP0757A	-	IS element transposase (partial)
723	 63.42	+2	736810..737148	+	112	38233365	-	DIP0758	-	putative transposase (partial)
724	 50.00	0	738682..739023	-	113	38233366	-	DIP0761	-	hypothetical protein
725	 52.99	0	739057..739860	-	267	38233367	-	DIP0762	-	hypothetical protein
726	 59.28	+1	740277..741590	-	437	38233368	-	DIP0764	-	putative transposase
727	 48.51	-1	742372..742674	-	100	38233369	tnpA1	DIP0766	-	transposase A
728	 52.93	0	749836..750483	-	215	38233370	-	DIP0771	-	hypothetical protein
729	 59.10	+1	750488..752152	-	554	38233371	-	DIP0772	-	putative ATP-dependent DNA helicase
730	 57.27	0	752198..754516	-	772	38233372	-	DIP0773	-	putative DNA-binding protein
731	 52.32	0	754535..754771	+	78	38233373	-	DIP0774	-	hypothetical protein
732	 59.78	+1	754956..755579	-	207	38233374	-	DIP0775	-	hypothetical protein
733	 54.36	0	756260..756649	+	129	38233375	cspB	DIP0776	-	cold shock protein B
734	 52.76	0	756756..757280	-	174	38233376	-	DIP0777	-	hypothetical protein
735	 54.33	0	757267..758133	-	288	38233377	-	DIP0778	-	hypothetical protein
736	 55.16	0	758173..758937	+	254	38233378	-	DIP0779	-	hypothetical protein
737	 56.05	0	759111..760598	+	495	38233379	-	DIP0780	-	hypothetical protein
738	 55.30	0	760677..761573	+	298	38233380	-	DIP0781	-	putative methyltransferase
739	 54.07	0	761570..762466	-	298	38233381	-	DIP0782	-	hypothetical protein
740	 55.81	0	762487..763536	-	349	38233382	-	DIP0783	-	hypothetical protein
741	 54.20	0	763738..764868	-	376	38233383	-	DIP0784	-	phosphoserine aminotransferase
742	 54.81	0	765550..766848	+	432	161598677	gltA	DIP0785	-	type II citrate synthase
743	 59.72	+1	767015..767374	+	119	38233385	-	DIP0786	-	putative FK506-binding protein
744	 56.18	0	767461..768966	-	501	38233386	accDA	DIP0787	-	putative carboxyltransferase subunit of acetyl-CoA carboxylase
745	 54.41	0	769059..769931	+	290	38233387	-	DIP0788	-	putative oxidoreductase
746	 53.93	0	769931..770707	+	258	38233388	-	DIP0789	-	enoyl-CoA hydratase
747	 51.75	0	771056..771397	+	113	38233389	-	DIP0790	-	hypothetical protein
748	 53.36	0	771401..773053	+	550	38233390	-	DIP0791	-	putative transport membrane protein
749	 53.68	0	773178..774032	+	284	38233391	-	DIP0792	-	hypothetical protein
750	 59.41	+1	774025..774933	-	302	38233392	-	DIP0793	-	hypothetical protein
751	 52.33	0	775062..776261	-	399	38233393	-	DIP0794	-	Na(+)/H(+) antiporter-like protein
752	 53.64	0	776521..776973	-	150	38233394	-	DIP0795	-	hypothetical protein
753	 56.26	0	776985..777551	-	188	38233395	-	DIP0796	-	hypothetical protein
754	 57.74	0	777583..777750	-	55	38233396	-	DIP0797	-	hypothetical protein
755	 56.78	0	777872..778144	-	90	38233397	-	DIP0798	-	hypothetical protein
756	 57.32	0	778157..778477	+	106	38233398	-	DIP0799	-	hypothetical protein
757	 63.89	+2	778799..779374	+	191	38233399	-	DIP0800	-	hypothetical protein
758	 56.86	0	779748..780104	+	118	38233400	-	DIP0801	-	hypothetical protein
759	 57.43	0	780077..780574	-	165	38233401	-	DIP0802	-	hypothetical protein
760	 62.65	+1	780837..781160	-	107	38233402	-	DIP0803	-	hypothetical protein
761	 62.67	+1	781172..783724	-	850	38233403	-	DIP0804	-	hypothetical protein
762	 58.58	+1	783728..785731	-	667	38233404	-	DIP0805	-	putative DNA methylase
763	 42.25	-2	786230..786958	+	242	38233405	-	DIP0806	-	hypothetical protein
764	 45.43	-1	786955..787392	+	145	38233406	-	DIP0807	-	hypothetical protein
765	 64.78	+2	787574..787945	-	123	38233407	-	DIP0808	-	hypothetical protein
766	 62.96	+1	787932..788174	-	80	38233408	-	DIP0809	-	hypothetical protein
767	 66.13	+2	788227..788601	-	124	38233409	-	DIP0810	-	hypothetical protein
768	 63.69	+2	788588..788956	-	122	38233410	-	DIP0811	-	hypothetical protein
769	 65.43	+2	788946..789917	-	323	38233411	-	DIP0812	-	hypothetical protein
770	 59.52	+1	789916..790419	+	167	38233412	-	DIP0813	-	hypothetical protein
771	 67.44	+2	790442..790960	+	172	38233413	-	DIP0816	-	hypothetical protein
772	 64.41	+2	790953..792017	+	354	38233414	-	DIP0817	-	putative phage integrase
773	 61.95	+1	792350..792688	-	112	38233415	-	DIP0818	-	hypothetical protein
774	 60.57	+1	792701..793471	+	256	38233416	-	DIP0819	-	hypothetical protein
775	 62.90	+1	793522..795300	+	592	38233417	-	DIP0820	-	hypothetical protein
776	 47.45	-1	795749..796081	+	110	38233418	-	DIP0821	-	hypothetical protein
777	 56.44	0	796088..796840	+	250	38233419	-	DIP0822	-	precorrin 6A synthase
778	 54.65	0	796859..797116	-	85	38233420	-	DIP0823	-	hypothetical protein
779	 60.32	+1	797137..797640	-	167	38233421	-	DIP0824	-	putative folate reductase
780	 53.26	0	797640..798452	-	270	38233422	thyA	DIP0825	-	thymidylate synthase
781	 60.21	+1	798546..799304	-	252	38233423	-	DIP0826	-	putative sulfite synthesis related protein
782	 56.99	0	799343..804157	+	1604	38233424	-	DIP0827	-	putative ATP-dependent helicase
783	 57.07	0	804154..804705	-	183	38233425	-	DIP0828	-	putative DNA repair protein
784	 53.66	0	804836..805642	+	268	38233426	-	DIP0829	-	putative endonuclease
785	 51.78	0	805625..807250	-	541	38233427	-	DIP0830	-	hypothetical protein
786	 49.03	-1	807364..807777	+	137	38233428	-	DIP0831	-	hypothetical protein
787	 54.44	0	807862..809505	-	547	38233429	pgi	DIP0832	-	glucose-6-phosphate isomerase
788	 56.30	0	809708..811192	+	494	38233430	-	DIP0833	-	putative succinate-semialdehyde dehydrogenase
789	 56.16	0	811189..811521	-	110	38233431	-	DIP0834	-	hypothetical protein
790	 50.50	0	811671..814088	+	805	38233432	pcrA	DIP0835	-	ATP-dependent DNA helicase
791	 54.53	0	814166..814882	-	238	38233433	-	DIP0836	-	hypothetical protein
792	 52.10	0	815288..816742	+	484	38233434	-	DIP0837	-	hypothetical protein
793	 53.85	0	816768..817391	+	207	38233435	purN	DIP0838	-	phosphoribosylglycinamide formyltransferase
794	 57.54	0	817381..818958	+	525	38233436	purH	DIP0839	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.