IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
629	 56.09	0	641251..641751	+	166	38233271	purE	DIP0664	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
630	 56.28	0	641756..642217	+	153	38233272	-	DIP0665	-	hypothetical protein
631	 58.24	0	642209..643324	-	371	38233273	hypD	DIP0666	-	hydrogenase isoenzyme formation protein
632	 49.61	0	643324..643581	-	85	38233274	hypC	DIP0667	-	hydrogenase expression/formation protein HypC
633	 58.73	+1	643639..644709	+	356	38233275	hypE	DIP0668	-	hydrogenase expression/formation protein HypE
634	 56.73	0	644718..646952	-	744	38233276	-	DIP0669	-	putative hydrogenase maturation protein
635	 58.11	0	646965..647303	+	112	38233277	-	DIP0670	-	putative hydrogenase nickel incorporation protein
636	 53.02	0	647316..648077	+	253	38233278	-	DIP0671	-	putative hydrogenase nickel incorporation protein
637	 55.85	0	648378..649634	+	418	38233279	-	DIP0672	-	putative uptake hydrogenase small subunit
638	 55.33	0	649640..651385	+	581	38233280	-	DIP0673	-	putative uptake hydrogenase large subunit
639	 56.45	0	651382..652536	+	384	38233281	-	DIP0674	-	putative Ni/Fe-hydrogenase B-type cytochrome subunit
640	 59.84	+1	652547..653059	+	170	38233282	-	DIP0675	-	putative hydrogenase maturation protease
641	 55.46	0	653056..653421	-	121	38233283	-	DIP0676	-	putative hydrogenase nickel incorporation protein
642	 55.27	0	653448..654491	+	347	38233284	-	DIP0677	-	putative reducing hydrogenase alpha subunit
643	 58.14	0	654497..654754	+	85	38233285	-	DIP0678	-	putative hydrogenase operon protein
644	 60.94	+1	654751..655413	-	220	38233286	-	DIP0679	-	hypothetical protein
645	 54.09	0	655425..656903	-	492	38233287	-	DIP0680	-	hypothetical protein
646	 52.86	0	657162..658052	+	296	38233288	-	DIP0681	-	putative glycosyl transferase
647	 54.36	0	658206..659294	+	362	38233289	-	DIP0682	-	putative mannose-1-phosphate guanyltransferase
648	 47.10	-1	659420..659557	+	45	38233290	-	DIP0683	-	hypothetical protein
649	 54.67	0	659753..660052	+	99	38233291	-	DIP0684	-	putative regulatory protein
650	 59.21	+1	660126..660581	-	151	38233292	-	DIP0685	-	hypothetical protein
651	 55.80	0	660680..661093	+	137	38233293	-	DIP0686	-	hypothetical protein
652	 55.92	0	661191..662567	+	458	38233294	manB	DIP0687	-	phosphomannomutase/phosphoglucomutase
653	 53.97	0	662616..663623	+	335	38233295	-	DIP0688	-	hypothetical protein
654	 53.08	0	663663..664832	+	389	38233296	-	DIP0689	-	putative mannose-phosphate isomerase
655	 56.92	0	664858..665709	-	283	38233297	-	DIP0690	-	hypothetical protein
656	 54.24	0	666050..666403	+	117	38233298	-	DIP0691	-	hypothetical protein
657	 53.79	0	666509..667945	+	478	38233299	ahcY	DIP0692	-	S-adenosyl-L-homocysteine hydrolase
658	 53.88	0	667945..668562	+	205	38233300	-	DIP0693	-	thymidylate kinase
659	 51.79	0	668619..669317	+	232	38233301	mtrA2	DIP0694	-	putative two component system response regulator
660	 52.95	0	669450..670892	+	480	38233302	mtrB	DIP0695	-	putative two component system sensor kinase
661	 52.75	0	670885..672630	+	581	38233303	-	DIP0696	-	lipoprotein LpqB
662	 56.55	0	672652..673254	+	200	38233304	-	DIP0697	-	hypothetical protein
663	 54.11	0	673384..674052	+	222	38233305	-	DIP0698	-	hypothetical protein
664	 53.51	0	674230..676791	+	853	38233306	secA	DIP0699	-	preprotein translocase subunit SecA
665	 50.98	0	676843..677046	+	67	38233307	-	DIP0700	-	hypothetical protein
666	 56.20	0	677455..677865	+	136	38233308	-	DIP0701	-	hypothetical protein
667	 54.64	0	677877..678383	+	168	38233309	-	DIP0702	-	hypothetical protein
668	 56.58	0	678605..679675	+	356	38233310	-	DIP0703	-	putative oxidoreductase
669	 50.43	0	679690..680970	+	426	38233311	-	DIP0704	-	hypothetical protein
670	 59.72	+1	680972..681979	-	335	38233312	-	DIP0705	-	hypothetical protein
671	 58.18	0	681984..683279	-	431	38233313	aroA	DIP0706	-	3-phosphoshikimate 1-carboxyvinyltransferase
672	 54.45	0	683297..683959	+	220	38233314	-	DIP0707	-	hypothetical protein
673	 51.39	0	683945..684448	-	167	38233315	-	DIP0708	-	hypothetical protein
674	 50.32	0	684494..685117	+	207	38233316	rpoE	DIP0709	-	RNA polymerase sigma factor RpoE
675	 50.79	0	685114..685365	+	83	38233317	-	DIP0710	-	putative anti sigma factor
676	 46.96	-1	685370..685714	-	114	38233318	-	DIP0711	-	hypothetical protein
677	 62.84	+1	686052..686312	-	86	38233319	-	DIP0712	-	putative transcriptional regulator
678	 49.87	0	686383..686781	+	132	38233320	-	DIP0713	-	hypothetical protein
679	 51.52	0	686945..687406	+	153	38233321	-	DIP0715	-	hypothetical protein
680	 55.11	0	687400..688662	-	420	38233322	-	DIP0716	-	hypothetical protein
681	 55.99	0	688659..689969	-	436	38233323	-	DIP0717	-	putative ATP-dependent RNA helicase
682	 49.21	0	690051..690176	-	41	38233324	-	DIP0718	-	hypothetical protein
683	 56.14	0	690227..690454	+	75	38233325	-	DIP0719	-	hypothetical protein
684	 54.84	0	690457..691335	+	292	38233326	-	DIP0720	-	hypothetical protein
685	 53.50	0	691359..692216	+	285	38233327	-	DIP0721	-	hypothetical protein
686	 52.62	0	692220..695402	+	1060	38233328	-	DIP0722	-	putative ATP-dependent DNA helicase
687	 51.84	0	695396..698626	+	1076	38233329	-	DIP0723	-	putative helicase
688	 52.98	0	698671..699759	+	362	38233330	-	DIP0724	-	membrane transporter
689	 53.51	0	699791..700474	+	227	38233331	-	DIP0725	-	putative hydrolase
690	 54.19	0	700467..702518	+	683	38233332	uvrD	DIP0726	-	putative DNA helicase II
691	 53.56	0	702463..703362	-	299	38233333	-	DIP0727	-	hypothetical protein
692	 53.45	0	703392..703913	+	173	38233334	-	DIP0728	-	hypothetical protein
693	 55.68	0	703910..705301	-	463	38233335	-	DIP0729	-	hypothetical protein
694	 55.65	0	705382..706434	+	350	38233336	-	DIP0730	-	hypothetical protein
695	 52.42	0	706446..707147	-	233	38233337	-	DIP0731	-	hypothetical protein
696	 57.54	0	707195..707698	-	167	38233338	-	DIP0732	-	hypothetical protein
697	 53.17	0	707871..710834	+	987	38233339	-	DIP0733	-	hypothetical protein
698	 58.42	+1	711318..711887	-	189	38233340	-	DIP0734	-	hypothetical protein
699	 52.06	0	711917..712231	-	104	38233341	-	DIP0735	-	hypothetical protein
700	 59.55	+1	712417..713427	-	336	38233342	-	DIP0736	-	putative protease
701	 52.66	0	713430..714386	-	318	38233343	-	DIP0737	-	hypothetical protein
702	 55.95	0	714642..714809	+	55	38233344	-	DIP0738	-	hypothetical protein
703	 53.98	0	715065..716546	+	493	38233345	pycB	DIP0739	-	oxaloacetate decarboxylase
704	 55.62	0	716559..718115	+	518	38233346	mmdA	DIP0740	-	methylmalonyl-CoA decarboxylase, alpha-subunit
705	 53.79	0	718129..718392	+	87	38233347	-	DIP0741	-	hypothetical protein
706	 57.18	0	718417..718785	+	122	38233348	-	DIP0742	-	putative decarboxylase
707	 53.35	0	718856..720079	+	407	38233349	-	DIP0743	-	hypothetical protein
708	 56.91	0	720098..720886	-	262	38233350	-	DIP0744	-	hypothetical protein
709	 55.33	0	720943..721815	-	290	38233351	-	DIP0745	-	hypothetical protein
710	 53.87	0	721938..723047	+	369	38233352	prfB	DIP0746	-	peptide chain release factor 2
711	 52.22	0	723044..724642	-	532	38233353	-	DIP0747	-	hypothetical protein
712	 52.61	0	724821..725510	+	229	38233354	ftsE	DIP0748	-	cell division ATP-binding protein
713	 51.38	0	725527..726429	+	300	38233355	-	DIP0749	-	putative cell division protein
714	 50.61	0	726536..727027	+	163	38233356	smpB	DIP0750	-	SsrA-binding protein
715	 52.08	0	727065..727256	+	63	38233357	-	DIP0751	-	hypothetical protein
716	 48.99	-1	727618..728997	+	459	38233358	-	DIP0752	-	IS element transposase
717	 47.07	-1	729107..732040	+	977	38233359	-	DIP0753	-	putative lantibiotic modifying enzyme
718	 46.65	-1	732028..734160	+	710	38233360	-	DIP0754	-	lantibiotic ABC transporter membrane protein
719	 47.21	-1	734160..735038	+	292	38233361	-	DIP0755	-	lantibiotic ABC transporter ATP-binding protein
720	 43.23	-2	735038..735835	+	265	38233362	-	DIP0756	-	lantibiotic ABC transporter membrane protein
721	 54.68	0	736001..736267	-	88	38233363	-	DIP0757	-	IS element transposase (partial)
722	 52.81	0	736323..736553	-	76	38233364	-	DIP0757A	-	IS element transposase (partial)
723	 63.42	+2	736810..737148	+	112	38233365	-	DIP0758	-	putative transposase (partial)
724	 50.00	0	738682..739023	-	113	38233366	-	DIP0761	-	hypothetical protein
725	 52.99	0	739057..739860	-	267	38233367	-	DIP0762	-	hypothetical protein
726	 59.28	+1	740277..741590	-	437	38233368	-	DIP0764	-	putative transposase
727	 48.51	-1	742372..742674	-	100	38233369	tnpA1	DIP0766	-	transposase A
728	 52.93	0	749836..750483	-	215	38233370	-	DIP0771	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.