IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
557	 45.26	-1	560966..561250	+	94	38233199	-	DIP0592	-	hypothetical protein
558	 51.23	0	561256..561825	+	189	38233200	-	DIP0593	-	hypothetical protein
559	 58.11	0	562125..562346	+	73	38233201	-	DIP0594	-	hypothetical protein
560	 60.96	+1	562428..564005	+	525	38233202	guaA	DIP0595	-	bifunctional GMP synthase/glutamine amidotransferase protein
561	 58.94	+1	564081..564779	-	232	38233203	-	DIP0596	-	hypothetical protein
562	 53.67	0	564837..565313	+	158	38233204	-	DIP0597	-	hypothetical protein
563	 53.79	0	565332..566465	-	377	38233205	-	DIP0598	-	hypothetical protein
564	 52.31	0	566547..567758	+	403	38233206	-	DIP0599	-	putative two component system sensor kinase
565	 54.89	0	567764..568459	+	231	38233207	-	DIP0600	-	putative two component system response regulator
566	 47.58	-1	568608..568958	+	116	38233208	-	DIP0601	-	hypothetical protein
567	 52.67	0	569168..569617	-	149	38233209	-	DIP0602	-	hypothetical protein
568	 48.51	-1	569646..570416	+	256	38233210	-	DIP0603	-	hypothetical protein
569	 53.90	0	570425..571951	+	508	38233211	-	DIP0604	-	hypothetical protein
570	 53.85	0	571955..572656	-	233	38233212	-	DIP0605	-	hypothetical protein
571	 52.90	0	572761..573639	+	292	38233213	-	DIP0606	-	hypothetical protein
572	 57.34	0	573656..575113	-	485	38233214	-	DIP0607	-	hypothetical protein
573	 59.44	+1	575214..575891	-	225	38233215	-	DIP0608	-	ABC transporter
574	 56.21	0	575888..576910	-	340	38233216	-	DIP0609	-	ABC transporter ATP-binding protein
575	 52.92	0	576948..577820	-	290	38233217	-	DIP0610	-	ABC transporter
576	 54.64	0	577994..578866	-	290	38233218	-	DIP0611	-	ABC transporter
577	 53.88	0	579083..582202	+	1039	38233219	dnaE2	DIP0612	-	error-prone DNA polymerase
578	 55.63	0	582222..582692	+	156	38233220	-	DIP0613	-	hypothetical protein
579	 52.65	0	582689..584029	+	446	38233221	-	DIP0614	-	hypothetical protein
580	 54.14	0	584097..585062	+	321	38233222	-	DIP0615	-	ABC transporter
581	 54.83	0	585131..585916	+	261	38233223	-	DIP0616	-	ABC transporter ATP-binding protein
582	 51.44	0	585906..586739	+	277	38233224	-	DIP0617	-	ABC transporter
583	 49.19	0	586736..587542	+	268	38233225	-	DIP0618	-	ABC transporter
584	 49.92	0	587557..588171	+	204	38233226	-	DIP0619	-	putative diphtheria toxin repressor 2
585	 50.24	0	588393..589238	+	281	38233227	folD	DIP0620	-	methylenetetrahydrofolate dehydrogenase
586	 47.71	-1	589231..589557	+	108	38233228	-	DIP0621	-	hypothetical protein
587	 48.82	-1	589692..590957	-	421	38233229	-	DIP0622	-	hypothetical protein
588	 54.44	0	591014..592117	-	367	38233230	metX	DIP0623	-	homoserine O-acetyltransferase
589	 51.63	0	592180..592731	-	183	38233231	-	DIP0624	-	hypothetical protein
590	 50.39	0	592944..594719	+	591	38233232	-	DIP0625	-	hypothetical protein
591	 50.56	0	594730..595791	+	353	38233233	hmuT	DIP0626	-	Iron-related transport system receptor precursor protein
592	 48.81	-1	595775..596827	+	350	38233234	hmuU	DIP0627	-	Iron-related transport system membrane protein
593	 52.04	0	596848..597681	+	277	38233235	hmuV	DIP0628	-	Iron-related transport system ATP-binding protein
594	 45.91	-1	597871..598848	+	325	38233236	-	DIP0629	-	hypothetical protein
595	 55.66	0	598958..600274	-	438	38233237	-	DIP0630	-	O-acetylhomoserine aminocarboxypropyltransferase
596	 59.08	+1	600526..602739	-	737	38233238	icd	DIP0631	-	isocitrate dehydrogenase [NADP]
597	 54.64	0	602928..604208	+	426	38233239	-	DIP0632	-	hypothetical protein
598	 53.53	0	604219..605124	+	301	38233240	-	DIP0633	-	putative exodeoxyribonuclease
599	 56.11	0	605270..605449	+	59	38233241	-	DIP0634	-	hypothetical protein
600	 54.20	0	605642..606676	+	344	38233242	trpS	DIP0635	-	tryptophanyl-tRNA synthetase
601	 55.90	0	606805..607965	+	386	38233243	-	DIP0636	-	hypothetical protein
602	 55.72	0	608070..609302	-	410	38233244	-	DIP0637	-	putative peptidoglycan synthesis related protein
603	 50.69	0	609337..610281	+	314	38233245	-	DIP0638	-	hypothetical protein
604	 59.04	+1	610555..611787	-	410	38233246	-	DIP0639	-	hypothetical protein
605	 59.76	+1	611808..612647	-	279	38233247	-	DIP0640	-	hypothetical protein
606	 59.57	+1	612644..612925	-	93	38233248	-	DIP0641	-	hypothetical protein
607	 57.55	0	612990..613625	+	211	38233249	upp	DIP0642	-	uracil phosphoribosyltransferase
608	 54.30	0	613790..614371	+	193	38233250	-	DIP0643	-	putative DNA-binding protein
609	 56.17	0	614468..615658	+	396	38233251	-	DIP0644	-	hypothetical protein
610	 54.72	0	615701..617173	+	490	38233252	lpdA	DIP0645	-	flavoprotein disulfide reductase
611	 57.53	0	617693..621118	+	1141	38233253	pyc	DIP0646	-	pyruvate carboxylase
612	 52.68	0	621208..621972	-	254	38233254	-	DIP0647	-	hypothetical protein
613	 58.02	0	621987..622391	-	134	38233255	-	DIP0648	-	hypothetical protein
614	 59.33	+1	622563..624347	-	594	38233256	accBC	DIP0649	-	acyl coenzyme A carboxylase
615	 57.48	0	624604..625485	-	293	38233257	sseA	DIP0650	-	putative thiosulfate sulfurtransferase
616	 55.62	0	626082..627140	+	352	38233258	-	DIP0651	-	hypothetical protein
617	 54.77	0	627335..629452	+	705	38233259	-	DIP0652	-	hypothetical protein
618	 59.67	+1	629449..629877	-	142	38233260	-	DIP0653	-	hypothetical protein
619	 55.44	0	629879..630475	-	198	38233261	maf	DIP0654	-	Maf-like protein
620	 58.17	0	630494..631399	-	301	38233262	-	DIP0655	-	putative ribokinase
621	 54.36	0	631544..632599	-	351	38233263	-	DIP0656	-	putative transcriptional regulatory protein
622	 52.11	0	632991..633251	-	86	38233264	-	DIP0657	-	hypothetical protein
623	 55.82	0	633347..634978	-	543	38233265	pccB1	DIP0658	-	propionyl CoA carboxylase beta chain 1
624	 45.75	-1	635607..636701	+	364	38233266	-	DIP0659	-	hypothetical protein
625	 60.60	+1	636944..638575	-	543	38233267	pccB2	DIP0660	-	propionyl-CoA carboxylase beta chain 2
626	 56.30	0	638727..639527	+	266	38233268	-	DIP0661	-	biotin--protein ligase
627	 52.26	0	639528..639992	+	154	38233269	-	DIP0662	-	hypothetical protein
628	 57.71	0	640046..641251	+	401	38233270	purK	DIP0663	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
629	 56.09	0	641251..641751	+	166	38233271	purE	DIP0664	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
630	 56.28	0	641756..642217	+	153	38233272	-	DIP0665	-	hypothetical protein
631	 58.24	0	642209..643324	-	371	38233273	hypD	DIP0666	-	hydrogenase isoenzyme formation protein
632	 49.61	0	643324..643581	-	85	38233274	hypC	DIP0667	-	hydrogenase expression/formation protein HypC
633	 58.73	+1	643639..644709	+	356	38233275	hypE	DIP0668	-	hydrogenase expression/formation protein HypE
634	 56.73	0	644718..646952	-	744	38233276	-	DIP0669	-	putative hydrogenase maturation protein
635	 58.11	0	646965..647303	+	112	38233277	-	DIP0670	-	putative hydrogenase nickel incorporation protein
636	 53.02	0	647316..648077	+	253	38233278	-	DIP0671	-	putative hydrogenase nickel incorporation protein
637	 55.85	0	648378..649634	+	418	38233279	-	DIP0672	-	putative uptake hydrogenase small subunit
638	 55.33	0	649640..651385	+	581	38233280	-	DIP0673	-	putative uptake hydrogenase large subunit
639	 56.45	0	651382..652536	+	384	38233281	-	DIP0674	-	putative Ni/Fe-hydrogenase B-type cytochrome subunit
640	 59.84	+1	652547..653059	+	170	38233282	-	DIP0675	-	putative hydrogenase maturation protease
641	 55.46	0	653056..653421	-	121	38233283	-	DIP0676	-	putative hydrogenase nickel incorporation protein
642	 55.27	0	653448..654491	+	347	38233284	-	DIP0677	-	putative reducing hydrogenase alpha subunit
643	 58.14	0	654497..654754	+	85	38233285	-	DIP0678	-	putative hydrogenase operon protein
644	 60.94	+1	654751..655413	-	220	38233286	-	DIP0679	-	hypothetical protein
645	 54.09	0	655425..656903	-	492	38233287	-	DIP0680	-	hypothetical protein
646	 52.86	0	657162..658052	+	296	38233288	-	DIP0681	-	putative glycosyl transferase
647	 54.36	0	658206..659294	+	362	38233289	-	DIP0682	-	putative mannose-1-phosphate guanyltransferase
648	 47.10	-1	659420..659557	+	45	38233290	-	DIP0683	-	hypothetical protein
649	 54.67	0	659753..660052	+	99	38233291	-	DIP0684	-	putative regulatory protein
650	 59.21	+1	660126..660581	-	151	38233292	-	DIP0685	-	hypothetical protein
651	 55.80	0	660680..661093	+	137	38233293	-	DIP0686	-	hypothetical protein
652	 55.92	0	661191..662567	+	458	38233294	manB	DIP0687	-	phosphomannomutase/phosphoglucomutase
653	 53.97	0	662616..663623	+	335	38233295	-	DIP0688	-	hypothetical protein
654	 53.08	0	663663..664832	+	389	38233296	-	DIP0689	-	putative mannose-phosphate isomerase
655	 56.92	0	664858..665709	-	283	38233297	-	DIP0690	-	hypothetical protein
656	 54.24	0	666050..666403	+	117	38233298	-	DIP0691	-	hypothetical protein
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.