IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
498	 54.15	0	497871..498605	-	244	38233140	-	DIP0531	-	hypothetical protein
499	 55.91	0	498593..500293	-	566	38233141	-	DIP0532	-	putative amylase
500	 51.87	0	500305..502095	-	596	38233142	-	DIP0533	-	putative glycosilase
501	 48.55	-1	502322..503563	+	413	38233143	-	DIP0534	-	putative sugar-binding secreted protein
502	 48.93	-1	503681..505084	+	467	38233144	-	DIP0535	-	putative sugar ABC transport system membrane protein
503	 50.85	0	505084..505962	+	292	38233145	-	DIP0536	-	putative sugar ABC transport system membrane protein
504	 52.01	0	506046..506768	+	240	38233146	-	DIP0537	-	ABC transporter
505	 55.10	0	506765..508018	-	417	38233147	-	DIP0538	-	hypothetical protein
506	 58.49	+1	508133..509269	-	378	38233148	-	DIP0539	-	putative sugar ABC transport syste ATP-binding protein
507	 52.46	0	509759..511081	+	440	38233149	secY	DIP0540	-	preprotein translocase subunit SecY
508	 54.95	0	511081..511626	+	181	38233150	adk	DIP0541	-	adenylate kinase
509	 57.11	0	511740..512534	+	264	38233151	mapA	DIP0542	-	methionine aminopeptidase
510	 47.09	-1	512872..515037	+	721	38233152	-	DIP0543	-	putative sialidase precursor
511	 54.20	0	515101..515910	+	269	38233153	-	DIP0544	-	hypothetical protein
512	 51.14	0	516214..516432	+	72	38233154	infA	DIP0545	-	translation initiation factor IF-1
513	 58.81	+1	516618..516986	+	122	38233155	rpsM	DIP0546	-	30S ribosomal protein S13
514	 57.28	0	516990..517394	+	134	38233156	rpsK	DIP0547	-	30S ribosomal protein S11
515	 58.25	0	517418..518023	+	201	38233157	rpsD	DIP0548	-	30S ribosomal protein S4
516	 54.77	0	518105..519121	+	338	38233158	rpoA	DIP0549	-	DNA-directed RNA polymerase subunit alpha
517	 56.33	0	519202..519675	+	157	38233159	rplQ	DIP0550	-	50S ribosomal protein L17
518	 58.22	0	519770..520657	+	295	38233160	truA	DIP0551	-	tRNA pseudouridine synthase A
519	 55.43	0	520801..522099	+	432	38233161	-	DIP0552	-	hypothetical protein
520	 51.30	0	522208..522630	+	140	38233162	-	DIP0553	-	hypothetical protein
521	 53.44	0	522858..523757	-	299	38233163	-	DIP0554	-	putative subtilisin-like cell wall associated serine protease (mycosin)
522	 53.67	0	523770..525185	-	471	38233164	-	DIP0555	-	putative surface-anchored membrane protein
523	 52.80	0	525441..528980	+	1179	38233165	-	DIP0556	-	FtsK/SpoIIIE family ATP-binding protein
524	 51.11	0	529045..530034	+	329	38233166	-	DIP0557	-	hypothetical protein
525	 54.72	0	530237..530554	+	105	38233167	-	DIP0558	-	CFP-10-like protein
526	 52.78	0	530599..530886	+	95	38233168	-	DIP0559	-	ESAT-6-like protein
527	 54.00	0	530900..531049	+	49	38233169	-	DIP0560	-	hypothetical protein
528	 57.21	0	531311..531754	+	147	38233170	rplM	DIP0561	-	50S ribosomal protein L13
529	 59.74	+1	531751..532284	+	177	38233171	rpsI	DIP0562	-	30S ribosomal protein S9
530	 55.80	0	532453..533796	+	447	38233172	-	DIP0563	-	hypothetical protein
531	 54.67	0	533901..534200	+	99	38233173	-	DIP0564	-	hypothetical protein
532	 56.26	0	534197..535513	+	438	38233174	-	DIP0565	-	hypothetical protein
533	 54.02	0	535507..535767	+	86	38233175	-	DIP0566	-	hypothetical protein
534	 54.63	0	535786..536649	-	287	38233176	-	DIP0567	-	hypothetical protein
535	 55.87	0	536812..537960	+	382	38233177	alr	DIP0568	-	alanine racemase
536	 55.56	0	537967..538461	+	164	38233178	-	DIP0569	-	hypothetical protein
537	 58.78	+1	538648..540333	+	561	38233179	-	DIP0570	-	hypothetical protein
538	 55.06	0	540480..540953	+	157	38233180	-	DIP0571	-	hypothetical protein
539	 56.20	0	541021..541689	+	222	38233181	-	DIP0572	-	hypothetical protein
540	 55.28	0	541690..542181	+	163	38233182	-	DIP0573	-	putative ribosomal-protein-alanine acetyltransferase
541	 59.16	+1	542182..543234	+	350	38233183	-	DIP0574	-	O-sialoglycoprotein endopeptidase
542	 55.89	0	543376..543672	+	98	38233184	groES	DIP0575	-	co-chaperonin GroES
543	 57.41	0	543685..545304	+	539	38233185	groEL	DIP0576	-	chaperonin GroEL
544	 54.50	0	545504..546070	+	188	38233186	-	DIP0577	-	RNA polymerase sigma factor SigD
545	 55.81	0	546067..546969	+	300	38233187	-	DIP0578	-	hypothetical protein
546	 53.23	0	547039..547425	-	128	38233188	-	DIP0579	-	hypothetical protein
547	 57.26	0	547582..549102	+	506	38233189	guaB	DIP0580	-	inositol-5-monophosphate dehydrogenase
548	 57.42	0	549130..550275	+	381	38233190	-	DIP0581	-	inositol-5-monophosphate dehydrogenase
549	 53.85	0	550408..551304	+	298	38233191	-	DIP0582	-	putative iron transport system binding (secreted) protein
550	 58.59	+1	551335..552324	+	329	38233192	-	DIP0583	-	putative iron transport system membrane protein
551	 58.13	0	552324..553307	+	327	38233193	-	DIP0584	-	putative iron transport system membrane protein
552	 53.87	0	553311..554123	+	270	38233194	-	DIP0585	-	putative iron transport system ATP-binding protein
553	 58.30	0	554145..557468	+	1107	38233195	-	DIP0586	-	putative siderophore biosynthesis related protein
554	 59.35	+1	557508..558737	+	409	38233196	-	DIP0587	-	hypothetical protein
555	 58.39	0	558764..559198	+	144	38233197	-	DIP0588	-	hypothetical protein
556	 59.87	+1	559337..560233	-	298	38233198	-	DIP0589	-	hypothetical protein
557	 45.26	-1	560966..561250	+	94	38233199	-	DIP0592	-	hypothetical protein
558	 51.23	0	561256..561825	+	189	38233200	-	DIP0593	-	hypothetical protein
559	 58.11	0	562125..562346	+	73	38233201	-	DIP0594	-	hypothetical protein
560	 60.96	+1	562428..564005	+	525	38233202	guaA	DIP0595	-	bifunctional GMP synthase/glutamine amidotransferase protein
561	 58.94	+1	564081..564779	-	232	38233203	-	DIP0596	-	hypothetical protein
562	 53.67	0	564837..565313	+	158	38233204	-	DIP0597	-	hypothetical protein
563	 53.79	0	565332..566465	-	377	38233205	-	DIP0598	-	hypothetical protein
564	 52.31	0	566547..567758	+	403	38233206	-	DIP0599	-	putative two component system sensor kinase
565	 54.89	0	567764..568459	+	231	38233207	-	DIP0600	-	putative two component system response regulator
566	 47.58	-1	568608..568958	+	116	38233208	-	DIP0601	-	hypothetical protein
567	 52.67	0	569168..569617	-	149	38233209	-	DIP0602	-	hypothetical protein
568	 48.51	-1	569646..570416	+	256	38233210	-	DIP0603	-	hypothetical protein
569	 53.90	0	570425..571951	+	508	38233211	-	DIP0604	-	hypothetical protein
570	 53.85	0	571955..572656	-	233	38233212	-	DIP0605	-	hypothetical protein
571	 52.90	0	572761..573639	+	292	38233213	-	DIP0606	-	hypothetical protein
572	 57.34	0	573656..575113	-	485	38233214	-	DIP0607	-	hypothetical protein
573	 59.44	+1	575214..575891	-	225	38233215	-	DIP0608	-	ABC transporter
574	 56.21	0	575888..576910	-	340	38233216	-	DIP0609	-	ABC transporter ATP-binding protein
575	 52.92	0	576948..577820	-	290	38233217	-	DIP0610	-	ABC transporter
576	 54.64	0	577994..578866	-	290	38233218	-	DIP0611	-	ABC transporter
577	 53.88	0	579083..582202	+	1039	38233219	dnaE2	DIP0612	-	error-prone DNA polymerase
578	 55.63	0	582222..582692	+	156	38233220	-	DIP0613	-	hypothetical protein
579	 52.65	0	582689..584029	+	446	38233221	-	DIP0614	-	hypothetical protein
580	 54.14	0	584097..585062	+	321	38233222	-	DIP0615	-	ABC transporter
581	 54.83	0	585131..585916	+	261	38233223	-	DIP0616	-	ABC transporter ATP-binding protein
582	 51.44	0	585906..586739	+	277	38233224	-	DIP0617	-	ABC transporter
583	 49.19	0	586736..587542	+	268	38233225	-	DIP0618	-	ABC transporter
584	 49.92	0	587557..588171	+	204	38233226	-	DIP0619	-	putative diphtheria toxin repressor 2
585	 50.24	0	588393..589238	+	281	38233227	folD	DIP0620	-	methylenetetrahydrofolate dehydrogenase
586	 47.71	-1	589231..589557	+	108	38233228	-	DIP0621	-	hypothetical protein
587	 48.82	-1	589692..590957	-	421	38233229	-	DIP0622	-	hypothetical protein
588	 54.44	0	591014..592117	-	367	38233230	metX	DIP0623	-	homoserine O-acetyltransferase
589	 51.63	0	592180..592731	-	183	38233231	-	DIP0624	-	hypothetical protein
590	 50.39	0	592944..594719	+	591	38233232	-	DIP0625	-	hypothetical protein
591	 50.56	0	594730..595791	+	353	38233233	hmuT	DIP0626	-	Iron-related transport system receptor precursor protein
592	 48.81	-1	595775..596827	+	350	38233234	hmuU	DIP0627	-	Iron-related transport system membrane protein
593	 52.04	0	596848..597681	+	277	38233235	hmuV	DIP0628	-	Iron-related transport system ATP-binding protein
594	 45.91	-1	597871..598848	+	325	38233236	-	DIP0629	-	hypothetical protein
595	 55.66	0	598958..600274	-	438	38233237	-	DIP0630	-	O-acetylhomoserine aminocarboxypropyltransferase
596	 59.08	+1	600526..602739	-	737	38233238	icd	DIP0631	-	isocitrate dehydrogenase [NADP]
597	 54.64	0	602928..604208	+	426	38233239	-	DIP0632	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.