IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
440	 57.60	0	440423..441613	+	396	38233082	tuf	DIP0470	-	elongation factor Tu
441	 51.22	0	441718..442248	+	176	38233083	-	DIP0471	-	hypothetical protein
442	 56.86	0	442760..443065	+	101	38233084	rpsJ	DIP0472	-	30S ribosomal protein S10
443	 58.60	+1	443098..443754	+	218	38233085	rplC	DIP0473	-	50S ribosomal protein L3
444	 58.72	+1	443751..444404	+	217	38233086	rplD	DIP0474	-	50S ribosomal protein L4
445	 57.52	0	444404..444709	+	101	38233087	rplW	DIP0475	-	50S ribosomal protein L23
446	 58.48	+1	444731..445573	+	280	38233088	rplB	DIP0476	-	50S ribosomal protein L2
447	 55.91	0	445590..445868	+	92	38233089	rpsS	DIP0477	-	30S ribosomal protein S19
448	 59.78	+1	445872..446234	+	120	38233090	rplV	DIP0478	-	50S ribosomal protein L22
449	 62.52	+1	446234..446980	+	248	38233091	rpsC	DIP0479	-	30S ribosomal protein S3
450	 54.92	0	446984..447400	+	138	38233092	rplP	DIP0480	-	50S ribosomal protein L16
451	 61.04	+1	447400..447630	+	76	38233093	rpmC	DIP0481	-	50S ribosomal protein L29
452	 54.12	0	447633..447911	+	92	38233094	rpsQ	DIP0482	-	30S ribosomal protein S17
453	 55.56	0	448082..449719	+	545	38233095	-	DIP0483	-	hypothetical protein
454	 53.42	0	449736..450452	+	238	38233096	-	DIP0484	-	ABC transporter ATP-binding protein
455	 50.57	0	450449..451759	+	436	38233097	-	DIP0485	-	ABC transporter inner membrane protein
456	 55.01	0	451955..452323	+	122	38233098	rplN	DIP0486	-	50S ribosomal protein L14
457	 54.92	0	452326..452640	+	104	38233099	rplX	DIP0487	-	50S ribosomal protein L24
458	 56.74	0	452643..453206	+	187	38233100	rplE	DIP0488	-	50S ribosomal protein L5
459	 53.87	0	453909..455252	+	447	38233101	sdaC	DIP0489	-	serine transporter
460	 55.70	0	455277..456653	+	458	38233102	sdaA	DIP0490	-	L-serine dehydratase 1
461	 60.16	+1	456732..457760	+	342	38233103	-	DIP0491	-	putative secreted amino acid hydrolase
462	 54.12	0	457757..458800	-	347	38233104	-	DIP0492	-	molybdopterin biosynthesis protein MoeB
463	 55.42	0	458800..459795	-	331	38233105	-	DIP0493	-	putative bifunctional molybdopterim biosynthesis protein
464	 51.34	0	460091..460834	-	247	38233106	-	DIP0494	-	hypothetical protein
465	 53.11	0	460848..462713	-	621	38233107	-	DIP0495	-	molybdenum ABC transporter ATP-binding protein
466	 50.09	0	462759..463301	-	180	38233108	-	DIP0496	-	putative molybdate binding protein (partial)
467	 49.74	0	463533..464312	-	259	38233109	narI	DIP0497	-	putative nitrate reductase gamma chain
468	 52.06	0	464326..464955	-	209	38233110	-	DIP0498	-	putative nitrate reductase delta chain
469	 52.87	0	465007..466608	-	533	38233111	narH	DIP0499	-	nitrate reductase beta chain
470	 53.61	0	466608..470330	-	1240	38233112	narG	DIP0500	-	respiratory nitrate reductase 1 alpha chain
471	 52.93	0	470374..471705	-	443	38233113	-	DIP0501	-	putative nitrate/nitrite transport system integral membrane protein
472	 54.04	0	472039..473337	-	432	38233114	narK	DIP0502	-	putative nitrate/nitrite transport system integral membrane protein
473	 48.48	-1	473591..474085	+	164	38233115	-	DIP0503	-	putative molybdenum cofactor biosynthesis protein
474	 54.15	0	474082..474696	-	204	38233116	-	DIP0504	-	putative molybdopterin biosynthesis protein
475	 51.92	0	474674..475141	-	155	38233117	moaC	DIP0505	-	molybdenum cofactor biosynthesis protein
476	 54.77	0	475157..476383	-	408	38233118	-	DIP0506	-	putative molybdopterin biosynthesis protein
477	 49.71	0	476407..477438	-	343	38233119	moaA	DIP0507	-	molybdenum cofactor biosynthesis protein A
478	 59.28	+1	479270..480190	-	306	38233120	-	DIP0511	-	putative lysine biosynthesis protein
479	 56.47	0	480224..481057	-	277	38233121	-	DIP0512	-	putative oligopeptide transport system ATP-binding protein
480	 56.96	0	481063..483051	-	662	38233122	-	DIP0513	-	putative oligopeptide transport system (integral membrane and ATP-binding proteins)
481	 55.80	0	483051..484016	-	321	38233123	-	DIP0514	-	putative oligopeptide transport system integral membrane protein
482	 56.59	0	484258..485874	-	538	38233124	-	DIP0515	-	putative transport system secreted protein
483	 49.74	0	485970..486158	+	62	38233125	-	DIP0516	-	hypothetical protein
484	 53.94	0	486216..486977	+	253	38233126	-	DIP0517	-	GntR family regulatory protein
485	 61.47	+1	486974..487858	+	294	38233127	-	DIP0518	-	putative regulatory protein sugar kinase
486	 59.48	+1	487887..488582	+	231	38233128	-	DIP0519	-	N-acetylmannosamine-6-phosphate 2-epimerase
487	 59.37	+1	488618..489754	+	378	38233129	-	DIP0520	-	putative deacetylase
488	 52.56	0	489788..490567	+	259	38233130	-	DIP0521	-	putative isomerase
489	 49.29	0	490628..492664	-	678	38233131	-	DIP0522	-	hypothetical protein
490	 46.41	-1	492762..493763	-	333	38233132	-	DIP0523	-	hypothetical protein
491	 56.14	0	494228..494626	+	132	38233133	rpsH	DIP0524	-	30S ribosomal protein S8
492	 53.82	0	494642..495178	+	178	38233134	rplF	DIP0525	-	50S ribosomal protein L6
493	 61.25	+1	495220..495588	+	122	38233135	rplR	DIP0526	-	50S ribosomal protein L18
494	 60.61	+1	495629..496255	+	208	38233136	rpsE	DIP0527	-	30S ribosomal protein S5
495	 53.76	0	496259..496444	+	61	38233137	rpmD	DIP0528	-	50S ribosomal protein L30
496	 57.27	0	496447..496893	+	148	38233138	rplO	DIP0529	-	50S ribosomal protein L15
497	 52.93	0	497070..497870	+	266	38233139	-	DIP0530	-	putative transport protein
498	 54.15	0	497871..498605	-	244	38233140	-	DIP0531	-	hypothetical protein
499	 55.91	0	498593..500293	-	566	38233141	-	DIP0532	-	putative amylase
500	 51.87	0	500305..502095	-	596	38233142	-	DIP0533	-	putative glycosilase
501	 48.55	-1	502322..503563	+	413	38233143	-	DIP0534	-	putative sugar-binding secreted protein
502	 48.93	-1	503681..505084	+	467	38233144	-	DIP0535	-	putative sugar ABC transport system membrane protein
503	 50.85	0	505084..505962	+	292	38233145	-	DIP0536	-	putative sugar ABC transport system membrane protein
504	 52.01	0	506046..506768	+	240	38233146	-	DIP0537	-	ABC transporter
505	 55.10	0	506765..508018	-	417	38233147	-	DIP0538	-	hypothetical protein
506	 58.49	+1	508133..509269	-	378	38233148	-	DIP0539	-	putative sugar ABC transport syste ATP-binding protein
507	 52.46	0	509759..511081	+	440	38233149	secY	DIP0540	-	preprotein translocase subunit SecY
508	 54.95	0	511081..511626	+	181	38233150	adk	DIP0541	-	adenylate kinase
509	 57.11	0	511740..512534	+	264	38233151	mapA	DIP0542	-	methionine aminopeptidase
510	 47.09	-1	512872..515037	+	721	38233152	-	DIP0543	-	putative sialidase precursor
511	 54.20	0	515101..515910	+	269	38233153	-	DIP0544	-	hypothetical protein
512	 51.14	0	516214..516432	+	72	38233154	infA	DIP0545	-	translation initiation factor IF-1
513	 58.81	+1	516618..516986	+	122	38233155	rpsM	DIP0546	-	30S ribosomal protein S13
514	 57.28	0	516990..517394	+	134	38233156	rpsK	DIP0547	-	30S ribosomal protein S11
515	 58.25	0	517418..518023	+	201	38233157	rpsD	DIP0548	-	30S ribosomal protein S4
516	 54.77	0	518105..519121	+	338	38233158	rpoA	DIP0549	-	DNA-directed RNA polymerase subunit alpha
517	 56.33	0	519202..519675	+	157	38233159	rplQ	DIP0550	-	50S ribosomal protein L17
518	 58.22	0	519770..520657	+	295	38233160	truA	DIP0551	-	tRNA pseudouridine synthase A
519	 55.43	0	520801..522099	+	432	38233161	-	DIP0552	-	hypothetical protein
520	 51.30	0	522208..522630	+	140	38233162	-	DIP0553	-	hypothetical protein
521	 53.44	0	522858..523757	-	299	38233163	-	DIP0554	-	putative subtilisin-like cell wall associated serine protease (mycosin)
522	 53.67	0	523770..525185	-	471	38233164	-	DIP0555	-	putative surface-anchored membrane protein
523	 52.80	0	525441..528980	+	1179	38233165	-	DIP0556	-	FtsK/SpoIIIE family ATP-binding protein
524	 51.11	0	529045..530034	+	329	38233166	-	DIP0557	-	hypothetical protein
525	 54.72	0	530237..530554	+	105	38233167	-	DIP0558	-	CFP-10-like protein
526	 52.78	0	530599..530886	+	95	38233168	-	DIP0559	-	ESAT-6-like protein
527	 54.00	0	530900..531049	+	49	38233169	-	DIP0560	-	hypothetical protein
528	 57.21	0	531311..531754	+	147	38233170	rplM	DIP0561	-	50S ribosomal protein L13
529	 59.74	+1	531751..532284	+	177	38233171	rpsI	DIP0562	-	30S ribosomal protein S9
530	 55.80	0	532453..533796	+	447	38233172	-	DIP0563	-	hypothetical protein
531	 54.67	0	533901..534200	+	99	38233173	-	DIP0564	-	hypothetical protein
532	 56.26	0	534197..535513	+	438	38233174	-	DIP0565	-	hypothetical protein
533	 54.02	0	535507..535767	+	86	38233175	-	DIP0566	-	hypothetical protein
534	 54.63	0	535786..536649	-	287	38233176	-	DIP0567	-	hypothetical protein
535	 55.87	0	536812..537960	+	382	38233177	alr	DIP0568	-	alanine racemase
536	 55.56	0	537967..538461	+	164	38233178	-	DIP0569	-	hypothetical protein
537	 58.78	+1	538648..540333	+	561	38233179	-	DIP0570	-	hypothetical protein
538	 55.06	0	540480..540953	+	157	38233180	-	DIP0571	-	hypothetical protein
539	 56.20	0	541021..541689	+	222	38233181	-	DIP0572	-	hypothetical protein
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.