IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
396	 53.69	0	389443..389835	+	130	38233038	-	DIP0424	-	hypothetical protein
397	 55.46	0	389811..390836	+	341	38233039	-	DIP0425	-	putative glycosyl transferase
398	 53.91	0	390814..391503	+	229	161598678	ubiE	DIP0426	-	ubiquinone/menaquinone biosynthesis methyltransferase
399	 57.20	0	391490..392440	-	316	38233041	-	DIP0427	-	putative lactate dehydrogenase
400	 59.52	+1	392451..393653	-	400	38233042	-	DIP0428	-	putative FAD-linked oxidoreductase
401	 57.80	0	393735..394727	+	330	38233043	-	DIP0429	-	putative polyprenyl diphosphate synthase component
402	 50.95	0	395376..395744	+	122	38233044	secE	DIP0430	-	preprotein translocase subunit SecE
403	 54.42	0	395838..396629	+	263	38233045	nusG	DIP0431	-	transcription antitermination protein NusG
404	 55.71	0	396774..397202	+	142	38233046	rplK	DIP0432	-	50S ribosomal protein L11
405	 51.84	0	397269..397976	+	235	38233047	rplA	DIP0433	-	50S ribosomal protein L1
406	 52.77	0	398031..398843	-	270	38233048	-	DIP0434	-	putative transposase
407	 54.04	0	398891..399373	-	160	38233049	-	DIP0435	-	putative insertion element DNA-binding protein
408	 54.65	0	399728..400243	+	171	38233050	rplJ	DIP0436	-	50S ribosomal protein L10
409	 53.81	0	400287..400667	+	126	38233051	rplL	DIP0437	-	50S ribosomal protein L7/L12
410	 54.08	0	400793..402262	+	489	38233052	-	DIP0438	-	hypothetical protein
411	 56.08	0	402263..403159	+	298	38233053	-	DIP0439	-	hypothetical protein
412	 57.20	0	403152..403880	+	242	38233054	-	DIP0440	-	ABC transporter ATP-binding protein
413	 53.70	0	403882..404745	+	287	38233055	-	DIP0441	-	hypothetical protein
414	 46.09	-1	404738..406720	+	660	38233056	-	DIP0442	-	hypothetical protein
415	 49.47	0	406738..407592	+	284	38233057	-	DIP0443	-	putative surface-anchored membrane protein
416	 52.25	0	407597..408616	+	339	38233058	-	DIP0444	-	hypothetical protein
417	 55.91	0	408621..409559	+	312	38233059	-	DIP0445	-	hypothetical protein
418	 58.02	0	409723..413250	+	1175	38233060	rpoB	DIP0446	-	DNA-directed RNA polymerase subunit beta
419	 57.14	0	413298..417308	+	1336	38233061	rpoC	DIP0447	-	DNA-directed RNA polymerase subunit beta'
420	 45.19	-1	417620..418336	-	238	38233062	-	DIP0448	-	ABC transporter ATP-binding protein
421	 48.45	-1	418336..420009	-	557	38233063	-	DIP0449	-	ABC transporter inner membrane protein
422	 49.69	0	420167..420643	+	158	38233064	-	DIP0450	-	hypothetical protein
423	 47.53	-1	420648..420971	+	107	38233065	-	DIP0451	-	hypothetical protein
424	 55.93	0	421023..421292	-	89	38233066	-	DIP0452	-	putative transposase
425	 55.00	0	426702..427061	-	119	38233067	-	DIP0455	-	hypothetical protein
426	 50.54	0	427246..427710	-	154	38233068	-	DIP0456	-	hypothetical protein
427	 45.10	-1	427803..428210	-	135	38233069	-	DIP0457	-	hypothetical protein
428	 52.89	0	428385..429611	+	408	38233070	cstS	DIP0458	-	histidine kinase
429	 54.84	0	429616..430317	+	233	38233071	cstA	DIP0459	-	response regulator
430	 59.08	+1	430344..431318	+	324	38233072	-	DIP0460	-	ABC transporter ATP-binding protein
431	 53.26	0	431339..432106	+	255	38233073	-	DIP0461	-	ABC transporter inner membrane protein
432	 55.51	0	432122..432793	+	223	38233074	-	DIP0462	-	hypothetical protein
433	 58.15	0	432790..433728	+	312	38233075	-	DIP0463	-	hypothetical protein
434	 59.13	+1	433725..434228	-	167	38233076	-	DIP0464	-	hypothetical protein
435	 54.29	0	434314..436098	-	594	38233077	-	DIP0465	-	anaerobic ribonucleoside triphosphate reductase
436	 52.54	0	436256..436609	+	117	38233078	-	DIP0466	-	hypothetical protein
437	 58.87	+1	436884..437255	+	123	38233079	rpsL	DIP0467	-	30S ribosomal protein S12
438	 55.98	0	437259..437726	+	155	38233080	rpsG	DIP0468	-	30S ribosomal protein S7
439	 56.17	0	437925..440105	+	726	38233081	fusA	DIP0469	-	elongation factor G
440	 57.60	0	440423..441613	+	396	38233082	tuf	DIP0470	-	elongation factor Tu
441	 51.22	0	441718..442248	+	176	38233083	-	DIP0471	-	hypothetical protein
442	 56.86	0	442760..443065	+	101	38233084	rpsJ	DIP0472	-	30S ribosomal protein S10
443	 58.60	+1	443098..443754	+	218	38233085	rplC	DIP0473	-	50S ribosomal protein L3
444	 58.72	+1	443751..444404	+	217	38233086	rplD	DIP0474	-	50S ribosomal protein L4
445	 57.52	0	444404..444709	+	101	38233087	rplW	DIP0475	-	50S ribosomal protein L23
446	 58.48	+1	444731..445573	+	280	38233088	rplB	DIP0476	-	50S ribosomal protein L2
447	 55.91	0	445590..445868	+	92	38233089	rpsS	DIP0477	-	30S ribosomal protein S19
448	 59.78	+1	445872..446234	+	120	38233090	rplV	DIP0478	-	50S ribosomal protein L22
449	 62.52	+1	446234..446980	+	248	38233091	rpsC	DIP0479	-	30S ribosomal protein S3
450	 54.92	0	446984..447400	+	138	38233092	rplP	DIP0480	-	50S ribosomal protein L16
451	 61.04	+1	447400..447630	+	76	38233093	rpmC	DIP0481	-	50S ribosomal protein L29
452	 54.12	0	447633..447911	+	92	38233094	rpsQ	DIP0482	-	30S ribosomal protein S17
453	 55.56	0	448082..449719	+	545	38233095	-	DIP0483	-	hypothetical protein
454	 53.42	0	449736..450452	+	238	38233096	-	DIP0484	-	ABC transporter ATP-binding protein
455	 50.57	0	450449..451759	+	436	38233097	-	DIP0485	-	ABC transporter inner membrane protein
456	 55.01	0	451955..452323	+	122	38233098	rplN	DIP0486	-	50S ribosomal protein L14
457	 54.92	0	452326..452640	+	104	38233099	rplX	DIP0487	-	50S ribosomal protein L24
458	 56.74	0	452643..453206	+	187	38233100	rplE	DIP0488	-	50S ribosomal protein L5
459	 53.87	0	453909..455252	+	447	38233101	sdaC	DIP0489	-	serine transporter
460	 55.70	0	455277..456653	+	458	38233102	sdaA	DIP0490	-	L-serine dehydratase 1
461	 60.16	+1	456732..457760	+	342	38233103	-	DIP0491	-	putative secreted amino acid hydrolase
462	 54.12	0	457757..458800	-	347	38233104	-	DIP0492	-	molybdopterin biosynthesis protein MoeB
463	 55.42	0	458800..459795	-	331	38233105	-	DIP0493	-	putative bifunctional molybdopterim biosynthesis protein
464	 51.34	0	460091..460834	-	247	38233106	-	DIP0494	-	hypothetical protein
465	 53.11	0	460848..462713	-	621	38233107	-	DIP0495	-	molybdenum ABC transporter ATP-binding protein
466	 50.09	0	462759..463301	-	180	38233108	-	DIP0496	-	putative molybdate binding protein (partial)
467	 49.74	0	463533..464312	-	259	38233109	narI	DIP0497	-	putative nitrate reductase gamma chain
468	 52.06	0	464326..464955	-	209	38233110	-	DIP0498	-	putative nitrate reductase delta chain
469	 52.87	0	465007..466608	-	533	38233111	narH	DIP0499	-	nitrate reductase beta chain
470	 53.61	0	466608..470330	-	1240	38233112	narG	DIP0500	-	respiratory nitrate reductase 1 alpha chain
471	 52.93	0	470374..471705	-	443	38233113	-	DIP0501	-	putative nitrate/nitrite transport system integral membrane protein
472	 54.04	0	472039..473337	-	432	38233114	narK	DIP0502	-	putative nitrate/nitrite transport system integral membrane protein
473	 48.48	-1	473591..474085	+	164	38233115	-	DIP0503	-	putative molybdenum cofactor biosynthesis protein
474	 54.15	0	474082..474696	-	204	38233116	-	DIP0504	-	putative molybdopterin biosynthesis protein
475	 51.92	0	474674..475141	-	155	38233117	moaC	DIP0505	-	molybdenum cofactor biosynthesis protein
476	 54.77	0	475157..476383	-	408	38233118	-	DIP0506	-	putative molybdopterin biosynthesis protein
477	 49.71	0	476407..477438	-	343	38233119	moaA	DIP0507	-	molybdenum cofactor biosynthesis protein A
478	 59.28	+1	479270..480190	-	306	38233120	-	DIP0511	-	putative lysine biosynthesis protein
479	 56.47	0	480224..481057	-	277	38233121	-	DIP0512	-	putative oligopeptide transport system ATP-binding protein
480	 56.96	0	481063..483051	-	662	38233122	-	DIP0513	-	putative oligopeptide transport system (integral membrane and ATP-binding proteins)
481	 55.80	0	483051..484016	-	321	38233123	-	DIP0514	-	putative oligopeptide transport system integral membrane protein
482	 56.59	0	484258..485874	-	538	38233124	-	DIP0515	-	putative transport system secreted protein
483	 49.74	0	485970..486158	+	62	38233125	-	DIP0516	-	hypothetical protein
484	 53.94	0	486216..486977	+	253	38233126	-	DIP0517	-	GntR family regulatory protein
485	 61.47	+1	486974..487858	+	294	38233127	-	DIP0518	-	putative regulatory protein sugar kinase
486	 59.48	+1	487887..488582	+	231	38233128	-	DIP0519	-	N-acetylmannosamine-6-phosphate 2-epimerase
487	 59.37	+1	488618..489754	+	378	38233129	-	DIP0520	-	putative deacetylase
488	 52.56	0	489788..490567	+	259	38233130	-	DIP0521	-	putative isomerase
489	 49.29	0	490628..492664	-	678	38233131	-	DIP0522	-	hypothetical protein
490	 46.41	-1	492762..493763	-	333	38233132	-	DIP0523	-	hypothetical protein
491	 56.14	0	494228..494626	+	132	38233133	rpsH	DIP0524	-	30S ribosomal protein S8
492	 53.82	0	494642..495178	+	178	38233134	rplF	DIP0525	-	50S ribosomal protein L6
493	 61.25	+1	495220..495588	+	122	38233135	rplR	DIP0526	-	50S ribosomal protein L18
494	 60.61	+1	495629..496255	+	208	38233136	rpsE	DIP0527	-	30S ribosomal protein S5
495	 53.76	0	496259..496444	+	61	38233137	rpmD	DIP0528	-	50S ribosomal protein L30
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.