IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
302	 58.01	0	287347..288594	+	415	38232944	-	DIP0323	-	ABC transporter
303	 60.62	+1	288591..290078	+	495	38232945	-	DIP0324	-	hypothetical protein
304	 61.25	+1	290085..291839	+	584	38232946	-	DIP0325	-	putative transport system membrane protein
305	 50.67	0	291817..293310	-	497	38232947	-	DIP0326	-	hypothetical protein
306	 60.00	+1	293451..296345	+	964	38232948	topA	DIP0327	-	DNA topoisomerase I
307	 57.12	0	296265..297290	-	341	38232949	-	DIP0328	-	hypothetical protein
308	 58.93	+1	297398..299374	-	658	38232950	-	DIP0329	-	OPT family protein. putative membrane protein
309	 60.95	+1	299461..301524	-	687	38232951	-	DIP0330	-	hypothetical protein
310	 61.89	+1	301604..302503	+	299	38232952	-	DIP0331	-	hypothetical protein
311	 57.89	0	302520..304046	-	508	38232953	-	DIP0332	-	putative adenylate cyclase
312	 62.95	+1	304045..305310	+	421	38232954	-	DIP0333	-	DNA polymerase III subunit delta'
313	 48.02	-1	305695..305946	+	83	38232955	-	DIP0334	-	hypothetical protein
314	 45.59	-1	306195..306602	+	135	38232956	-	DIP0335	-	hypothetical protein
315	 54.29	0	306606..306815	-	69	38232957	-	DIP0336	-	hypothetical protein
316	 53.16	0	306912..307370	-	152	38232958	-	DIP0337	-	putative phage integrase
317	 47.15	-1	307437..307559	-	40	38232959	-	DIP0338	-	hypothetical protein
318	 54.76	0	307596..307805	-	69	38232960	-	DIP0339	-	hypothetical protein
319	 43.05	-2	308897..309421	+	174	38232961	-	DIP0343	-	hypothetical protein
320	 40.43	-2	309428..309568	+	46	38232962	-	DIP0344	-	hypothetical protein
321	 42.22	-2	309574..309753	+	59	38232963	-	DIP0345	-	hypothetical protein
322	 50.00	0	309772..309933	+	53	38232964	-	DIP0346	-	putative IS element tranposase (partial)
323	 63.52	+2	309946..310104	+	52	38232965	-	DIP0347	-	hypothetical protein
324	 51.30	0	310129..311286	-	385	38232966	-	DIP0348	-	hypothetical protein
325	 60.80	+1	311422..312120	+	232	38232967	-	DIP0349	-	putative alkylated DNA repair protein
326	 61.82	+1	312169..312993	-	274	38232968	-	DIP0350	-	putative secreted protease
327	 56.99	0	313246..313617	+	123	38232969	-	DIP0351	-	putative plasmid replication protein
328	 41.07	-2	313721..313888	-	55	38232970	-	DIP0352	-	hypothetical protein
329	 47.98	-1	313903..314421	-	172	38232971	-	DIP0353	-	hypothetical protein
330	 50.00	0	315605..315754	-	49	38232972	-	DIP0356	-	hypothetical protein
331	 51.64	0	316102..323838	+	2578	38232973	-	DIP0357	-	putative secreted bifunctional (alpha-amylase and endo-alpha-glucosidase): starch degradation and integral membrane protein
332	 61.95	+1	323875..325527	-	550	38232974	-	DIP0358	-	acyl-CoA synthetase
333	 59.19	+1	325657..326445	+	262	38232975	-	DIP0359	-	putative secreted hydrolase
334	 56.47	0	326409..327281	-	290	38232976	rfbA	DIP0360	-	glucose-1-phosphate thymidylyltransferase
335	 57.16	0	327293..328639	-	448	38232977	-	DIP0361	-	putative bifunctional protein
336	 53.37	0	328678..329685	-	335	38232978	rmlB	DIP0362	-	putative dTDP-(glucose or rhamnose)-4,6-dehydratase
337	 56.76	0	329691..331043	-	450	38232979	-	DIP0363	-	putative metallopeptidase
338	 57.84	0	331040..333034	-	664	38232980	-	DIP0364	-	putative prolyl oligopeptidase family protein
339	 57.68	0	333123..334190	-	355	38232981	slpA	DIP0365	-	surface layer protein A
340	 40.20	-2	334217..334318	-	33	38232982	-	DIP0366	-	hypothetical protein
341	 45.45	-1	334359..334622	-	87	38232983	-	DIP0367	-	hypothetical protein
342	 55.32	0	334658..336067	+	469	38232984	lpd	DIP0368	-	dihydrolipoamide dehydrogenase
343	 54.95	0	336275..337699	-	474	38232985	-	DIP0369	-	putative regulatory protein
344	 55.73	0	338150..338908	+	252	38232986	-	DIP0370	-	putative succinate dehydrogenease cytochrome B subunit
345	 57.94	0	338927..340942	+	671	38232987	sdhA	DIP0371	-	succinate dehydrogenase flavoprotein subunit
346	 58.67	+1	340942..341691	+	249	38232988	-	DIP0372	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
347	 57.26	0	341769..342119	+	116	38232989	-	DIP0373	-	hypothetical protein
348	 47.92	-1	342204..342299	+	31	38232990	-	DIP0374	-	hypothetical protein
349	 55.32	0	342318..343586	+	422	38232991	-	DIP0375	-	hypothetical protein
350	 52.54	0	343599..343874	+	91	38232992	-	DIP0376	-	hypothetical protein
351	 61.35	+1	343881..344369	+	162	38232993	-	DIP0377	-	hypothetical protein
352	 56.45	0	344366..345109	-	247	38232994	-	DIP0378	-	hypothetical protein
353	 56.85	0	345115..345990	-	291	38232995	-	DIP0379	-	putative oxidoreductase
354	 57.93	0	348818..349630	-	270	38232996	-	DIP0382	-	hypothetical protein
355	 55.84	0	349646..350107	-	153	38232997	-	DIP0383	-	hypothetical protein
356	 59.08	+1	350143..351276	+	377	38232998	murB	DIP0384	-	UDP-N-acetylenolpyruvoylglucosamine reductase
357	 51.09	0	351273..351638	-	121	38232999	-	DIP0385	-	hypothetical protein
358	 59.99	+1	351641..353347	-	568	38233000	-	DIP0386	-	acyl-CoA synthetase
359	 58.55	+1	353409..355109	-	566	38233001	-	DIP0387	-	acyl-CoA synthetase
360	 59.27	+1	355193..356476	+	427	38233002	-	DIP0388	-	putative glycosyl transferase
361	 56.62	0	356496..357281	+	261	38233003	gpmA	DIP0389	-	phosphoglyceromutase
362	 54.29	0	357293..358447	+	384	38233004	-	DIP0390	-	putative two component system sensor kinase
363	 57.42	0	358447..359127	+	226	38233005	regX3	DIP0391	-	putative two component system response regulator
364	 59.77	+1	359090..359959	-	289	38233006	-	DIP0392	-	hypothetical protein
365	 55.45	0	360212..360835	+	207	38233007	-	DIP0393	-	hypothetical protein
366	 55.10	0	360869..361681	+	270	38233008	proC	DIP0394	-	pyrroline-5-carboxylate reductase
367	 50.52	0	361938..362129	+	63	38233009	-	DIP0395	-	putative DNA-binding (excisionase) protein
368	 55.70	0	362191..362418	+	75	38233010	-	DIP0396	-	hypothetical protein
369	 54.94	0	362497..363366	+	289	38233011	-	DIP0397	-	hypothetical protein
370	 59.00	+1	363332..364375	-	347	38233012	-	DIP0398	-	hypothetical protein
371	 55.97	0	364441..364683	+	80	38233013	-	DIP0399	-	hypothetical protein
372	 57.56	0	364800..366116	+	438	38233014	hemA	DIP0400	-	glutamyl-tRNA reductase
373	 57.63	0	366113..366997	+	294	38233015	hemC	DIP0401	-	porphobilinogen deaminase
374	 58.05	0	367058..368728	+	556	38233016	-	DIP0402	-	putative uroporphyrin-III C-methyltransferase
375	 53.58	0	368725..369717	+	330	38233017	hemB	DIP0403	-	delta-aminolevulinic acid dehydratase
376	 52.88	0	369844..370155	-	103	38233018	-	DIP0404	-	hypothetical protein
377	 54.75	0	370197..372722	+	841	38233019	-	DIP0405	-	putative cation transport protein
378	 54.69	0	372700..373818	-	372	38233020	-	DIP0406	-	hypothetical protein
379	 54.49	0	373884..374918	+	344	38233021	hemE	DIP0407	-	uroporphyrinogen decarboxylase
380	 55.65	0	374934..376286	+	450	38233022	hemG	DIP0408	-	protoporphyrinogen oxidase
381	 56.84	0	376342..377634	+	430	38233023	hemL	DIP0409	-	glutamate-1-semialdehyde aminotransferase
382	 57.64	0	377631..378239	+	202	38233024	-	DIP0410	-	putative phosphoglycerate mutase
383	 53.30	0	378240..378800	+	186	38233025	-	DIP0411	-	putative electron transport related protein
384	 52.90	0	378797..379588	+	263	38233026	-	DIP0412	-	putative cytochrome C biogenesis protein
385	 51.29	0	379597..381189	+	530	38233027	-	DIP0413	-	hypothetical protein
386	 51.33	0	381198..382097	+	299	38233028	-	DIP0414	-	putative cytochrome C related protein
387	 55.93	0	382094..382363	-	89	38233029	-	DIP0415	-	ArsR family transcriptional regulator
388	 47.09	-1	382403..382591	-	62	38233030	-	DIP0416	-	hypothetical protein
389	 48.54	-1	382590..382931	+	113	38233031	-	DIP0417	-	hypothetical protein
390	 57.64	0	382906..383769	-	287	38233032	menA	DIP0418	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
391	 51.53	0	383911..385020	+	369	38233033	-	DIP0419	-	hypothetical protein
392	 56.67	0	384980..386089	-	369	38233034	-	DIP0420	-	O-succinylbenzoic acid--CoA ligase
393	 59.52	+1	386100..386966	-	288	38233035	menB	DIP0421	-	naphthoate synthase
394	 61.06	+1	386971..387933	+	320	38233036	menC	DIP0422	-	O-succinylbenzoate synthase
395	 54.38	0	387917..389446	+	509	38233037	-	DIP0423	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
396	 53.69	0	389443..389835	+	130	38233038	-	DIP0424	-	hypothetical protein
397	 55.46	0	389811..390836	+	341	38233039	-	DIP0425	-	putative glycosyl transferase
398	 53.91	0	390814..391503	+	229	161598678	ubiE	DIP0426	-	ubiquinone/menaquinone biosynthesis methyltransferase
399	 57.20	0	391490..392440	-	316	38233041	-	DIP0427	-	putative lactate dehydrogenase
400	 59.52	+1	392451..393653	-	400	38233042	-	DIP0428	-	putative FAD-linked oxidoreductase
401	 57.80	0	393735..394727	+	330	38233043	-	DIP0429	-	putative polyprenyl diphosphate synthase component
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.