IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
257	 48.50	-1	242501..245743	+	1080	38232899	-	DIP0278	-	putative surface-anchored membrane protein
258	 59.21	+1	246016..247047	+	343	38232900	asd	DIP0279	-	aspartate-semialdehyde dehydrogenase
259	 64.90	+2	247054..247620	-	188	38232901	sigC	DIP0280	-	RNA polymerase sigma factor
260	 60.43	+1	247748..249286	+	512	38232902	cat	DIP0281	-	catalase
261	 56.56	0	249276..250334	-	352	38232903	-	DIP0282	-	ABC transporter ATP-binding protein
262	 57.59	0	250325..251878	-	517	38232904	-	DIP0283	-	putative transport system permease (iron)
263	 55.99	0	251875..252876	-	333	38232905	-	DIP0284	-	ABC transporter
264	 51.13	0	252957..254327	-	456	38232906	-	DIP0285	-	putative glycerol-3-phosphate transporter
265	 55.56	0	254456..255157	-	233	38232907	-	DIP0286	-	two-component regulatory protein
266	 58.02	0	255150..255947	-	265	38232908	-	DIP0287	-	two-component sensor protein
267	 55.78	0	256103..256405	-	100	38232909	-	DIP0288	-	putative monovalent cation/H+ antiporter subunit G
268	 50.19	0	256405..256671	-	88	38232910	-	DIP0289	-	putative monovalent cation/H+ antiporter subunit F
269	 52.65	0	256671..257048	-	125	38232911	-	DIP0290	-	putative monovalent cation/H+ antiporter subunit E
270	 58.07	0	257051..258574	-	507	38232912	-	DIP0291	-	putative monovalent cation/H+ antiporter subunit D
271	 57.98	0	258574..258999	-	141	38232913	-	DIP0292	-	putative monovalent cation/H+ antiporter subunit C
272	 55.30	0	259003..261915	-	970	38232914	-	DIP0293	-	putative monovalent cation/H+ antiporter subunit A
273	 61.02	+1	262085..263482	+	465	38232915	-	DIP0294	-	hypothetical protein
274	 51.52	0	263559..264449	-	296	38232916	-	DIP0295	-	hypothetical protein
275	 57.70	0	264827..265741	-	304	38232917	-	DIP0296	-	hypothetical protein
276	 56.99	0	265769..266233	+	154	38232918	-	DIP0297	-	hypothetical protein
277	 59.71	+1	266238..268622	-	794	38232919	-	DIP0298	-	putative penicillin-binding secreted protein
278	 54.60	0	268821..269168	+	115	38232920	-	DIP0299	-	putative regulatory protein
279	 53.85	0	269209..269364	+	51	38232921	-	DIP0300	-	hypothetical protein
280	 58.71	+1	269366..269830	+	154	38232922	-	DIP0301	-	hypothetical protein
281	 56.73	0	269881..270705	+	274	38232923	-	DIP0302	-	putative hydrolase
282	 58.04	0	270766..271449	-	227	38232924	-	DIP0303	-	putative transcription regulator
283	 56.22	0	271954..272709	+	251	38232925	nth	DIP0304	-	endonuclease III
284	 56.15	0	272702..273262	+	186	38232926	-	DIP0305	-	hypothetical protein
285	 57.72	0	273265..274002	+	245	38232927	-	DIP0306	-	hypothetical protein
286	 58.65	+1	274025..275221	+	398	38232928	-	DIP0307	-	putative serine protease (mycosin)
287	 60.38	+1	275218..276156	-	312	38232929	-	DIP0308	-	putative hydrolase
288	 54.79	0	276244..276765	-	173	38232930	-	DIP0309	-	hypothetical protein
289	 60.40	+1	276872..277525	+	217	38232931	-	DIP0310	-	hypothetical protein
290	 56.29	0	277463..278368	-	301	38232932	-	DIP0311	-	hypothetical protein
291	 60.50	+1	278791..279828	+	345	38232933	-	DIP0312	-	putative morphological differentiation-related protein
292	 57.83	0	279821..280918	+	365	38232934	-	DIP0313	-	hypothetical protein
293	 56.89	0	280915..281661	+	248	38232935	-	DIP0314	-	hypothetical protein
294	 59.24	+1	281661..282239	+	192	38232936	-	DIP0315	-	hypothetical protein
295	 56.57	0	282263..282460	+	65	38232937	-	DIP0316	-	hypothetical protein
296	 60.87	+1	282457..282732	+	91	38232938	-	DIP0317	-	hypothetical protein
297	 59.94	+1	282729..283055	+	108	38232939	-	DIP0318	-	hypothetical protein
298	 60.16	+1	283045..285381	-	778	38232940	-	DIP0319	-	ATP-dependent RNA helicase
299	 58.33	0	285652..285855	+	67	38232941	cspA	DIP0320	-	cold-shock protein
300	 60.68	+1	286029..286646	+	205	38232942	-	DIP0321	-	ABC transporter ATP-binding protein
301	 58.33	0	286643..287350	+	235	38232943	-	DIP0322	-	ABC transporter ATP-binding protein
302	 58.01	0	287347..288594	+	415	38232944	-	DIP0323	-	ABC transporter
303	 60.62	+1	288591..290078	+	495	38232945	-	DIP0324	-	hypothetical protein
304	 61.25	+1	290085..291839	+	584	38232946	-	DIP0325	-	putative transport system membrane protein
305	 50.67	0	291817..293310	-	497	38232947	-	DIP0326	-	hypothetical protein
306	 60.00	+1	293451..296345	+	964	38232948	topA	DIP0327	-	DNA topoisomerase I
307	 57.12	0	296265..297290	-	341	38232949	-	DIP0328	-	hypothetical protein
308	 58.93	+1	297398..299374	-	658	38232950	-	DIP0329	-	OPT family protein. putative membrane protein
309	 60.95	+1	299461..301524	-	687	38232951	-	DIP0330	-	hypothetical protein
310	 61.89	+1	301604..302503	+	299	38232952	-	DIP0331	-	hypothetical protein
311	 57.89	0	302520..304046	-	508	38232953	-	DIP0332	-	putative adenylate cyclase
312	 62.95	+1	304045..305310	+	421	38232954	-	DIP0333	-	DNA polymerase III subunit delta'
313	 48.02	-1	305695..305946	+	83	38232955	-	DIP0334	-	hypothetical protein
314	 45.59	-1	306195..306602	+	135	38232956	-	DIP0335	-	hypothetical protein
315	 54.29	0	306606..306815	-	69	38232957	-	DIP0336	-	hypothetical protein
316	 53.16	0	306912..307370	-	152	38232958	-	DIP0337	-	putative phage integrase
317	 47.15	-1	307437..307559	-	40	38232959	-	DIP0338	-	hypothetical protein
318	 54.76	0	307596..307805	-	69	38232960	-	DIP0339	-	hypothetical protein
319	 43.05	-2	308897..309421	+	174	38232961	-	DIP0343	-	hypothetical protein
320	 40.43	-2	309428..309568	+	46	38232962	-	DIP0344	-	hypothetical protein
321	 42.22	-2	309574..309753	+	59	38232963	-	DIP0345	-	hypothetical protein
322	 50.00	0	309772..309933	+	53	38232964	-	DIP0346	-	putative IS element tranposase (partial)
323	 63.52	+2	309946..310104	+	52	38232965	-	DIP0347	-	hypothetical protein
324	 51.30	0	310129..311286	-	385	38232966	-	DIP0348	-	hypothetical protein
325	 60.80	+1	311422..312120	+	232	38232967	-	DIP0349	-	putative alkylated DNA repair protein
326	 61.82	+1	312169..312993	-	274	38232968	-	DIP0350	-	putative secreted protease
327	 56.99	0	313246..313617	+	123	38232969	-	DIP0351	-	putative plasmid replication protein
328	 41.07	-2	313721..313888	-	55	38232970	-	DIP0352	-	hypothetical protein
329	 47.98	-1	313903..314421	-	172	38232971	-	DIP0353	-	hypothetical protein
330	 50.00	0	315605..315754	-	49	38232972	-	DIP0356	-	hypothetical protein
331	 51.64	0	316102..323838	+	2578	38232973	-	DIP0357	-	putative secreted bifunctional (alpha-amylase and endo-alpha-glucosidase): starch degradation and integral membrane protein
332	 61.95	+1	323875..325527	-	550	38232974	-	DIP0358	-	acyl-CoA synthetase
333	 59.19	+1	325657..326445	+	262	38232975	-	DIP0359	-	putative secreted hydrolase
334	 56.47	0	326409..327281	-	290	38232976	rfbA	DIP0360	-	glucose-1-phosphate thymidylyltransferase
335	 57.16	0	327293..328639	-	448	38232977	-	DIP0361	-	putative bifunctional protein
336	 53.37	0	328678..329685	-	335	38232978	rmlB	DIP0362	-	putative dTDP-(glucose or rhamnose)-4,6-dehydratase
337	 56.76	0	329691..331043	-	450	38232979	-	DIP0363	-	putative metallopeptidase
338	 57.84	0	331040..333034	-	664	38232980	-	DIP0364	-	putative prolyl oligopeptidase family protein
339	 57.68	0	333123..334190	-	355	38232981	slpA	DIP0365	-	surface layer protein A
340	 40.20	-2	334217..334318	-	33	38232982	-	DIP0366	-	hypothetical protein
341	 45.45	-1	334359..334622	-	87	38232983	-	DIP0367	-	hypothetical protein
342	 55.32	0	334658..336067	+	469	38232984	lpd	DIP0368	-	dihydrolipoamide dehydrogenase
343	 54.95	0	336275..337699	-	474	38232985	-	DIP0369	-	putative regulatory protein
344	 55.73	0	338150..338908	+	252	38232986	-	DIP0370	-	putative succinate dehydrogenease cytochrome B subunit
345	 57.94	0	338927..340942	+	671	38232987	sdhA	DIP0371	-	succinate dehydrogenase flavoprotein subunit
346	 58.67	+1	340942..341691	+	249	38232988	-	DIP0372	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
347	 57.26	0	341769..342119	+	116	38232989	-	DIP0373	-	hypothetical protein
348	 47.92	-1	342204..342299	+	31	38232990	-	DIP0374	-	hypothetical protein
349	 55.32	0	342318..343586	+	422	38232991	-	DIP0375	-	hypothetical protein
350	 52.54	0	343599..343874	+	91	38232992	-	DIP0376	-	hypothetical protein
351	 61.35	+1	343881..344369	+	162	38232993	-	DIP0377	-	hypothetical protein
352	 56.45	0	344366..345109	-	247	38232994	-	DIP0378	-	hypothetical protein
353	 56.85	0	345115..345990	-	291	38232995	-	DIP0379	-	putative oxidoreductase
354	 57.93	0	348818..349630	-	270	38232996	-	DIP0382	-	hypothetical protein
355	 55.84	0	349646..350107	-	153	38232997	-	DIP0383	-	hypothetical protein
356	 59.08	+1	350143..351276	+	377	38232998	murB	DIP0384	-	UDP-N-acetylenolpyruvoylglucosamine reductase
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.