IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
220	 54.39	0	202163..205282	+	1039	38232862	-	DIP0238	-	putative surface-anchored fimbrial subunit
221	 65.69	+2	205903..206310	-	135	38232863	-	DIP0240	-	hypothetical protein
222	 62.67	+1	206336..206485	-	49	38232864	-	DIP0241	-	hypothetical protein
223	 42.31	-2	206740..207051	-	103	38232865	-	DIP0242	-	putative IS element transposase
224	 44.10	-2	207298..207492	-	64	38232866	-	DIP0243	-	hypothetical protein
225	 53.33	0	207638..208117	-	159	38232867	-	DIP0244	-	hypothetical protein
226	 57.86	0	208253..209263	-	336	38232868	-	DIP0245	-	prephenate dehydrogenase
227	 58.72	+1	209301..209753	+	150	38232869	-	DIP0246	-	hypothetical protein
228	 65.77	+2	209792..210235	+	147	38232870	-	DIP0247	-	putative cytosine deaminase
229	 48.34	-1	210640..211152	+	170	38232871	-	DIP0248	-	putative excisionase
230	 50.75	0	211399..211599	+	66	38232872	-	DIP0249	-	hypothetical protein
231	 57.12	0	211613..213949	+	778	38232873	-	DIP0250	-	hypothetical protein
232	 60.09	+1	214616..215908	+	430	38232874	-	DIP0251	-	putative tRNA-ribosyltransferase
233	 62.08	+1	215918..216811	+	297	38232875	-	DIP0252	-	glutamyl-Q tRNA(Asp) synthetase
234	 63.28	+2	216891..218279	+	462	38232876	gntP	DIP0253	-	gluconate permease
235	 56.55	0	218276..218779	-	167	38232877	-	DIP0254	-	putative transferase
236	 54.29	0	218871..219080	-	69	38232878	-	DIP0255	-	hypothetical protein
237	 57.14	0	219238..219384	+	48	38232879	-	DIP0256	-	hypothetical protein
238	 54.52	0	219574..220833	+	419	38232880	-	DIP0257	-	hypothetical protein
239	 58.88	+1	220837..221388	+	183	38232881	-	DIP0258	-	hypothetical protein
240	 62.15	+1	221399..223522	+	707	38232882	dnaX	DIP0259	-	DNA polymerase III subunits gamma and tau
241	 56.07	0	223595..223915	+	106	38232883	-	DIP0260	-	hypothetical protein
242	 59.06	+1	223919..224575	+	218	38232884	recR	DIP0261	-	recombination protein RecR
243	 61.49	+1	224581..225333	-	250	38232885	-	DIP0262	-	hypothetical protein
244	 64.13	+2	225335..226597	-	420	38232886	-	DIP0263	-	hypothetical protein
245	 58.20	0	226618..227739	-	373	38232887	-	DIP0264	-	DNA polymerase III subunit epsilon
246	 57.12	0	227743..228507	-	254	38232888	-	DIP0265	-	putative nitroreductase
247	 55.58	0	228555..230267	-	570	161598679	leuA	DIP0266	-	2-isopropylmalate synthase
248	 54.55	0	230521..231552	+	343	38232890	-	DIP0267	-	putative regulatory protein
249	 55.22	0	231758..232858	+	366	38232891	-	DIP0268	-	hypothetical protein
250	 54.39	0	234348..235064	+	238	38232892	deoD	DIP0271	-	purine nucleoside phosphorylase
251	 55.09	0	235061..236425	+	454	38232893	-	DIP0272	-	putative antibiotic resistance protein membrane protein
252	 59.67	+1	236460..237116	+	218	38232894	deoC	DIP0273	-	deoxyribose-phosphate aldolase
253	 62.79	+1	237124..238776	+	550	38232895	-	DIP0274	-	putative mutase
254	 61.56	+1	238823..239860	+	345	38232896	-	DIP0275	-	hypothetical protein
255	 60.33	+1	239862..240698	-	278	38232897	-	DIP0276	-	hypothetical protein
256	 58.21	0	240889..242154	+	421	38232898	lysC	DIP0277	-	aspartate kinase
257	 48.50	-1	242501..245743	+	1080	38232899	-	DIP0278	-	putative surface-anchored membrane protein
258	 59.21	+1	246016..247047	+	343	38232900	asd	DIP0279	-	aspartate-semialdehyde dehydrogenase
259	 64.90	+2	247054..247620	-	188	38232901	sigC	DIP0280	-	RNA polymerase sigma factor
260	 60.43	+1	247748..249286	+	512	38232902	cat	DIP0281	-	catalase
261	 56.56	0	249276..250334	-	352	38232903	-	DIP0282	-	ABC transporter ATP-binding protein
262	 57.59	0	250325..251878	-	517	38232904	-	DIP0283	-	putative transport system permease (iron)
263	 55.99	0	251875..252876	-	333	38232905	-	DIP0284	-	ABC transporter
264	 51.13	0	252957..254327	-	456	38232906	-	DIP0285	-	putative glycerol-3-phosphate transporter
265	 55.56	0	254456..255157	-	233	38232907	-	DIP0286	-	two-component regulatory protein
266	 58.02	0	255150..255947	-	265	38232908	-	DIP0287	-	two-component sensor protein
267	 55.78	0	256103..256405	-	100	38232909	-	DIP0288	-	putative monovalent cation/H+ antiporter subunit G
268	 50.19	0	256405..256671	-	88	38232910	-	DIP0289	-	putative monovalent cation/H+ antiporter subunit F
269	 52.65	0	256671..257048	-	125	38232911	-	DIP0290	-	putative monovalent cation/H+ antiporter subunit E
270	 58.07	0	257051..258574	-	507	38232912	-	DIP0291	-	putative monovalent cation/H+ antiporter subunit D
271	 57.98	0	258574..258999	-	141	38232913	-	DIP0292	-	putative monovalent cation/H+ antiporter subunit C
272	 55.30	0	259003..261915	-	970	38232914	-	DIP0293	-	putative monovalent cation/H+ antiporter subunit A
273	 61.02	+1	262085..263482	+	465	38232915	-	DIP0294	-	hypothetical protein
274	 51.52	0	263559..264449	-	296	38232916	-	DIP0295	-	hypothetical protein
275	 57.70	0	264827..265741	-	304	38232917	-	DIP0296	-	hypothetical protein
276	 56.99	0	265769..266233	+	154	38232918	-	DIP0297	-	hypothetical protein
277	 59.71	+1	266238..268622	-	794	38232919	-	DIP0298	-	putative penicillin-binding secreted protein
278	 54.60	0	268821..269168	+	115	38232920	-	DIP0299	-	putative regulatory protein
279	 53.85	0	269209..269364	+	51	38232921	-	DIP0300	-	hypothetical protein
280	 58.71	+1	269366..269830	+	154	38232922	-	DIP0301	-	hypothetical protein
281	 56.73	0	269881..270705	+	274	38232923	-	DIP0302	-	putative hydrolase
282	 58.04	0	270766..271449	-	227	38232924	-	DIP0303	-	putative transcription regulator
283	 56.22	0	271954..272709	+	251	38232925	nth	DIP0304	-	endonuclease III
284	 56.15	0	272702..273262	+	186	38232926	-	DIP0305	-	hypothetical protein
285	 57.72	0	273265..274002	+	245	38232927	-	DIP0306	-	hypothetical protein
286	 58.65	+1	274025..275221	+	398	38232928	-	DIP0307	-	putative serine protease (mycosin)
287	 60.38	+1	275218..276156	-	312	38232929	-	DIP0308	-	putative hydrolase
288	 54.79	0	276244..276765	-	173	38232930	-	DIP0309	-	hypothetical protein
289	 60.40	+1	276872..277525	+	217	38232931	-	DIP0310	-	hypothetical protein
290	 56.29	0	277463..278368	-	301	38232932	-	DIP0311	-	hypothetical protein
291	 60.50	+1	278791..279828	+	345	38232933	-	DIP0312	-	putative morphological differentiation-related protein
292	 57.83	0	279821..280918	+	365	38232934	-	DIP0313	-	hypothetical protein
293	 56.89	0	280915..281661	+	248	38232935	-	DIP0314	-	hypothetical protein
294	 59.24	+1	281661..282239	+	192	38232936	-	DIP0315	-	hypothetical protein
295	 56.57	0	282263..282460	+	65	38232937	-	DIP0316	-	hypothetical protein
296	 60.87	+1	282457..282732	+	91	38232938	-	DIP0317	-	hypothetical protein
297	 59.94	+1	282729..283055	+	108	38232939	-	DIP0318	-	hypothetical protein
298	 60.16	+1	283045..285381	-	778	38232940	-	DIP0319	-	ATP-dependent RNA helicase
299	 58.33	0	285652..285855	+	67	38232941	cspA	DIP0320	-	cold-shock protein
300	 60.68	+1	286029..286646	+	205	38232942	-	DIP0321	-	ABC transporter ATP-binding protein
301	 58.33	0	286643..287350	+	235	38232943	-	DIP0322	-	ABC transporter ATP-binding protein
302	 58.01	0	287347..288594	+	415	38232944	-	DIP0323	-	ABC transporter
303	 60.62	+1	288591..290078	+	495	38232945	-	DIP0324	-	hypothetical protein
304	 61.25	+1	290085..291839	+	584	38232946	-	DIP0325	-	putative transport system membrane protein
305	 50.67	0	291817..293310	-	497	38232947	-	DIP0326	-	hypothetical protein
306	 60.00	+1	293451..296345	+	964	38232948	topA	DIP0327	-	DNA topoisomerase I
307	 57.12	0	296265..297290	-	341	38232949	-	DIP0328	-	hypothetical protein
308	 58.93	+1	297398..299374	-	658	38232950	-	DIP0329	-	OPT family protein. putative membrane protein
309	 60.95	+1	299461..301524	-	687	38232951	-	DIP0330	-	hypothetical protein
310	 61.89	+1	301604..302503	+	299	38232952	-	DIP0331	-	hypothetical protein
311	 57.89	0	302520..304046	-	508	38232953	-	DIP0332	-	putative adenylate cyclase
312	 62.95	+1	304045..305310	+	421	38232954	-	DIP0333	-	DNA polymerase III subunit delta'
313	 48.02	-1	305695..305946	+	83	38232955	-	DIP0334	-	hypothetical protein
314	 45.59	-1	306195..306602	+	135	38232956	-	DIP0335	-	hypothetical protein
315	 54.29	0	306606..306815	-	69	38232957	-	DIP0336	-	hypothetical protein
316	 53.16	0	306912..307370	-	152	38232958	-	DIP0337	-	putative phage integrase
317	 47.15	-1	307437..307559	-	40	38232959	-	DIP0338	-	hypothetical protein
318	 54.76	0	307596..307805	-	69	38232960	-	DIP0339	-	hypothetical protein
319	 43.05	-2	308897..309421	+	174	38232961	-	DIP0343	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.