IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2173	 59.20	+1	2376306..2377175	-	289	38234815	-	DIP2279	-	ABC transporter ATP-binding protein
2174	 59.95	+1	2377172..2377558	-	128	38234816	-	DIP2280	-	GntR family transcriptional regulator
2175	 61.58	+1	2377787..2379163	+	458	38234817	-	DIP2281	-	hypothetical protein
2176	 55.42	0	2379236..2380000	-	254	38234818	-	DIP2282	-	hypothetical protein
2177	 54.43	0	2380171..2380554	-	127	38234819	-	DIP2284	-	putative thioredoxin
2178	 51.90	0	2380762..2380971	+	69	38234820	-	DIP2285	-	putative cation transport protein
2179	 57.39	0	2381127..2383358	+	743	38234821	-	DIP2286	-	putative cation-transporting P-type ATPase
2180	 64.25	+2	2383456..2384781	+	441	38234822	-	DIP2287	-	putative integral membrane transport protein
2181	 55.23	0	2384785..2386305	-	506	38234823	dnaB	DIP2288	-	replicative DNA helicase
2182	 56.73	0	2386879..2387331	-	150	38234824	rplI	DIP2289	-	50S ribosomal protein L9
2183	 61.00	+1	2387462..2388043	-	193	38234825	ssb1	DIP2290	-	single-strand DNA-binding protein
2184	 54.51	0	2388168..2388455	-	95	161598671	rpsF	DIP2291	-	30S ribosomal protein S6
2185	 47.78	-1	2388650..2388829	-	59	38234827	-	DIP2292	-	hypothetical protein
2186	 56.87	0	2388829..2390400	-	523	38234828	-	DIP2293	-	putative integral membrane protein
2187	 54.97	0	2390445..2392625	-	726	38234829	-	DIP2294	-	putative penicillin-binding protein
2188	 54.27	0	2392713..2393075	-	120	38234830	-	DIP2295	-	hypothetical protein
2189	 52.10	0	2393194..2393646	+	150	38234831	-	DIP2296	-	MarR family transcriptional regulator
2190	 58.07	0	2393656..2394621	+	321	38234832	-	DIP2297	-	hypothetical protein
2191	 60.12	+1	2394633..2395304	+	223	38234833	-	DIP2298	-	short chain dehydrogenase
2192	 56.54	0	2395316..2395789	+	157	38234834	-	DIP2299	-	putative integral membrane protein
2193	 48.82	-1	2395856..2397301	-	481	38234835	-	DIP2300	-	putative DNA-binding protein
2194	 55.27	0	2397459..2398397	-	312	38234836	-	DIP2301	-	hypothetical protein
2195	 56.81	0	2398584..2399222	+	212	38234837	-	DIP2302	-	putative integral membrane protein
2196	 56.17	0	2399360..2399845	-	161	38234838	-	DIP2303	-	putative DNA protection during starvation protein
2197	 58.48	+1	2399933..2400787	+	284	38234839	-	DIP2304	-	putative DNA repair glycosylase
2198	 61.96	+1	2400809..2402317	+	502	38234840	-	DIP2305	-	hypothetical protein
2199	 59.37	+1	2402330..2403466	-	378	38234841	-	DIP2306	-	putative hydrolase
2200	 57.26	0	2403526..2404152	-	208	38234842	-	DIP2307	-	putative integral membrane protein
2201	 55.56	0	2404326..2405387	-	353	38234843	-	DIP2308	-	hypothetical protein
2202	 52.46	0	2405722..2406678	-	318	38234844	-	DIP2309	-	putative DNA-binding protein
2203	 51.30	0	2406782..2407360	-	192	38234845	-	DIP2310	-	hypothetical protein
2204	 57.64	0	2407563..2409290	-	575	38234846	-	DIP2311	-	hypothetical protein
2205	 57.01	0	2409373..2412573	-	1066	38234847	-	DIP2312	-	putative type I restriction/modification system protein
2206	 49.48	0	2412566..2413810	-	414	38234848	-	DIP2313	-	putative type I restriction/modification system DNA specificity protein
2207	 53.98	0	2413807..2415414	-	535	38234849	-	DIP2314	-	putative type I restriction/modification system DNA methylase
2208	 52.32	0	2415495..2417453	-	652	38234850	-	DIP2315	-	DNA-binding protein
2209	 51.21	0	2417717..2418952	-	411	38234851	-	DIP2317	-	DNA-binding protein
2210	 64.79	+2	2419180..2420880	-	566	38234852	-	DIP2318	-	hypothetical protein
2211	 55.72	0	2420959..2421561	-	200	38234853	-	DIP2319	-	putative copper zinc superoxide dismutase
2212	 58.03	0	2421946..2424828	-	960	38234854	leuS	DIP2320	-	leucyl-tRNA synthetase
2213	 49.33	0	2424897..2425046	-	49	38234855	-	DIP2321	-	hypothetical protein
2214	 51.45	0	2425110..2425832	-	240	38234856	-	DIP2322	-	hypothetical protein
2215	 61.41	+1	2425889..2426554	-	221	38234857	-	DIP2323	-	ABC transporter ATP-binding protein
2216	 56.91	0	2426551..2427585	-	344	38234858	-	DIP2324	-	ABC transporter inner membrane protein
2217	 51.02	0	2427721..2430360	-	879	38234859	-	DIP2325	-	putative surface-anchored protein
2218	 55.98	0	2430452..2431705	+	417	38234860	chrS	DIP2326	-	two-component system histidine kinase ChrS
2219	 59.33	+1	2431702..2432301	+	199	38234861	chrA	DIP2327	-	two-component response regulator ChrA
2220	 58.06	0	2432298..2432843	-	181	38234862	-	DIP2328	-	integral membrane protein
2221	 56.15	0	2432940..2434841	-	633	38234863	-	DIP2329	-	integral membrane protein
2222	 45.14	-1	2435213..2436271	+	352	38234864	-	DIP2330	-	hypothetical protein
2223	 60.34	+1	2436460..2437851	+	463	38234865	-	DIP2331	-	putative aldehyde dehydrogenase
2224	 58.11	0	2438019..2438813	+	264	38234866	-	DIP2332	-	putative phosphotransferase system protein
2225	 58.86	+1	2438839..2440401	+	520	38234867	ulaA	DIP2333	-	ascorbate-specific PTS system enzyme IIC
2226	 54.82	0	2440685..2441680	+	331	38234868	-	DIP2334	-	putative dihydroxyacetone kinase sununit
2227	 63.55	+2	2441684..2442325	+	213	38234869	-	DIP2335	-	putative dihydroxyacetone kinase sununit
2228	 59.34	+1	2442322..2442990	+	222	38234870	-	DIP2336	-	hypothetical protein
2229	 47.20	-1	2443176..2444495	+	439	38234871	-	DIP2337	-	putative phage resistance protein
2230	 40.92	-2	2444518..2445123	+	201	38234872	-	DIP2338	-	hypothetical protein
2231	 57.90	0	2445460..2446680	-	406	38234873	-	DIP2339	-	putative major secreted protein
2232	 59.54	+1	2446717..2447712	+	331	38234874	-	DIP2340	-	putative nucleoside hydrolase
2233	 54.55	0	2447808..2448566	+	252	38234875	-	DIP2341	-	putative integral membrane transport protein
2234	 59.60	+1	2448572..2449264	+	230	38234876	-	DIP2342	-	putative integral membrane transport protein
2235	 63.07	+2	2449283..2450449	+	388	38234877	-	DIP2343	-	ABC transporter ATP-binding protein
2236	 56.58	0	2450460..2451242	-	260	38234878	-	DIP2344	-	hypothetical protein
2237	 61.40	+1	2451284..2451928	+	214	38234879	-	DIP2345	-	hypothetical protein
2238	 54.42	0	2451936..2453429	-	497	38234880	-	DIP2346	-	hypothetical protein
2239	 52.59	0	2453493..2453762	-	89	38234881	-	DIP2347	-	hypothetical protein
2240	 55.34	0	2453759..2454376	-	205	38234882	-	DIP2348	-	hypothetical protein
2241	 57.51	0	2454544..2455788	-	414	38234883	-	DIP2349	-	putative integral membrane transport protein
2242	 55.15	0	2455876..2456448	+	190	38234884	-	DIP2350	-	putative integral membrane protein
2243	 54.05	0	2456701..2458032	+	443	38234885	trpB1	DIP2351	-	tryptophan synthase subunit beta
2244	 52.90	0	2458035..2459588	+	517	38234886	trpE	DIP2352	-	anthranilate synthase component I
2245	 57.98	0	2459588..2460232	+	214	38234887	trpG	DIP2353	-	anthranilate synthase component II
2246	 60.82	+1	2460247..2461272	+	341	38234888	trpD	DIP2354	-	anthranilate phosphoribosyltransferase
2247	 57.20	0	2461262..2462719	+	485	38234889	trpC1	DIP2355	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
2248	 53.70	0	2462780..2463157	+	125	38234890	-	DIP2356	-	hypothetical protein
2249	 57.49	0	2463154..2464014	+	286	38234891	panC	DIP2357	-	pantoate--beta-alanine ligase
2250	 58.71	+1	2464011..2464802	-	263	38234892	panB	DIP2358	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2251	 57.95	0	2465139..2466365	+	408	38234893	trpB2	DIP2360	-	tryptophan synthase subunit beta
2252	 59.38	+1	2466370..2467206	+	278	38234894	trpA	DIP2361	-	tryptophan synthase subunit alpha
2253	 60.58	+1	2467213..2467623	+	136	38234895	-	DIP2362	-	putative iron-sulphur protein
2254	 57.48	0	2467644..2468612	+	322	38234896	-	DIP2363	-	putative integral membrane protein
2255	 55.66	0	2468609..2468935	+	108	38234897	-	DIP2364	-	hypothetical protein
2256	 58.74	+1	2469062..2469427	-	121	38234898	-	DIP2365	-	putative integral membrane amino acid transport protein
2257	 57.51	0	2469436..2470167	-	243	38234899	-	DIP2366	-	putative integral membrane amino acid transport protein
2258	 56.95	0	2470168..2470764	-	198	38234900	-	DIP2367	-	hypothetical protein
2259	 56.25	0	2470765..2472252	-	495	38234901	-	DIP2368	-	putative tRNA nucleotidyltransferase
2260	 58.65	+1	2472392..2473264	+	290	38234902	-	DIP2369	-	hypothetical protein
2261	 59.26	+1	2473261..2475975	+	904	38234903	-	DIP2370	-	hypothetical protein
2262	 56.79	0	2476084..2479413	+	1109	38234904	-	DIP2371	-	putative integral membrane protein
2263	 58.71	+1	2479572..2480174	+	200	38234905	-	DIP2372	-	putative RNA polymerase sigma factor
2264	 55.45	0	2480310..2481254	+	314	38234906	trxB	DIP2373	-	thioredoxin reductase
2265	 49.69	0	2481269..2481592	+	107	38234907	trxA	DIP2374	-	thioredoxin
2266	 55.17	0	2481613..2482821	+	402	38234908	-	DIP2375	-	putative hydrolase
2267	 58.24	0	2482889..2483992	-	367	38234909	parB	DIP2376	-	putative chromosome partitioning protein
2268	 58.21	0	2483999..2485015	-	338	38234910	parA	DIP2377	-	putative chromosome partitioning protein
2269	 55.36	0	2485137..2485808	-	223	38234911	gidB	DIP2378	-	glucose-inhibited division protein B
2270	 51.57	0	2485931..2486884	-	317	38234912	-	DIP2379	-	putative inner membrane protein translocase component YidC
2271	 57.22	0	2487177..2487536	-	119	38234913	rnpA	DIP2381	-	ribonuclease P
2272	 60.42	+1	2487568..2487711	-	47	38234914	rpmH	DIP2382	-	50S ribosomal protein L34
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.