IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2125	 54.77	0	2315777..2319904	-	1375	38234767	-	DIP2227	-	surface-anchored fimbrial subunit
2126	 49.18	0	2320038..2320220	+	60	38234768	-	DIP2228	-	hypothetical protein
2127	 56.39	0	2321459..2321896	+	145	38234769	-	DIP2233	-	hypothetical protein
2128	 47.04	-1	2322596..2322967	+	123	38234770	-	DIP2234	-	hypothetical protein
2129	 57.59	0	2323066..2324586	-	506	38234771	glpK	DIP2235	-	glycerol kinase
2130	 60.86	+1	2324605..2325345	-	246	38234772	glpF	DIP2236	-	glycerol uptake facilitator protein
2131	 61.65	+1	2325345..2327078	-	577	38234773	glpD	DIP2237	-	putative glycerol-3-phosphate dehydrogenase
2132	 58.65	+1	2327266..2329098	-	610	38234774	-	DIP2238	-	putative acyltransferase
2133	 57.85	0	2329111..2329938	-	275	38234775	-	DIP2239	-	hypothetical protein
2134	 58.25	0	2329968..2331227	-	419	38234776	serS	DIP2240	-	seryl-tRNA synthetase
2135	 59.26	+1	2331262..2332098	+	278	38234777	-	DIP2241	-	GntR family transcriptional regulator
2136	 60.02	+1	2332109..2333101	+	330	38234778	-	DIP2242	-	hypothetical protein
2137	 54.60	0	2333108..2333455	+	115	38234779	-	DIP2243	-	hypothetical protein
2138	 49.92	0	2333530..2334777	+	415	38234780	-	DIP2244	-	hypothetical protein
2139	 62.33	+1	2334763..2335407	-	214	38234781	-	DIP2245	-	putative phosphoglycerate mutase
2140	 63.90	+2	2335434..2336336	-	300	161598672	pheA	DIP2246	-	prephenate dehydratase
2141	 59.62	+1	2336303..2337508	+	401	38234783	-	DIP2247	-	putative amidase
2142	 58.02	0	2337505..2338221	+	238	38234784	-	DIP2248	-	putative integral membrane protein
2143	 48.91	-1	2338205..2340496	-	763	38234785	-	DIP2249	-	putative nitric-oxide reductase
2144	 60.19	+1	2340708..2342003	+	431	38234786	-	DIP2250	-	hypothetical protein
2145	 58.28	0	2342131..2343621	-	496	38234787	-	DIP2251	-	putative sodium/alanine symporter
2146	 58.25	0	2343812..2345605	+	597	38234788	-	DIP2252	-	putative integral membrane protein
2147	 60.21	+1	2345667..2346533	-	288	38234789	-	DIP2253	-	hypothetical protein
2148	 58.63	+1	2346584..2347267	-	227	38234790	-	DIP2254	-	hypothetical protein
2149	 57.68	0	2347413..2348369	-	318	38234791	ldh	DIP2255	-	L-lactate dehydrogenase
2150	 47.11	-1	2348729..2349454	-	241	38234792	-	DIP2256	-	hypothetical protein
2151	 49.02	-1	2349511..2350428	+	305	38234793	nadA	DIP2257	-	quinolinate synthetase
2152	 49.59	0	2350425..2351654	+	409	38234794	nadB	DIP2258	-	putative aspartate oxidase
2153	 46.38	-1	2351642..2352469	+	275	38234795	nadC	DIP2259	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
2154	 59.28	+1	2352676..2353338	-	220	38234796	msrA	DIP2260	-	methionine sulfoxide reductase A
2155	 54.33	0	2353492..2354091	+	199	38234797	sodA	DIP2261	-	manganese superoxide dismutase
2156	 56.98	0	2354340..2354876	+	178	38234798	-	DIP2262	-	putative oxidoreductase
2157	 58.46	+1	2354873..2356225	-	450	38234799	-	DIP2263	-	hypothetical protein
2158	 61.01	+1	2356239..2357810	-	523	38234800	-	DIP2264	-	hypothetical protein
2159	 49.09	-1	2357845..2358555	+	236	38234801	-	DIP2265	-	hypothetical protein
2160	 49.69	0	2358677..2358994	+	105	38234802	-	DIP2266	-	hypothetical protein
2161	 59.78	+1	2359054..2359692	-	212	38234803	-	DIP2267	-	putative two component system response regulator protein
2162	 59.13	+1	2359774..2361153	-	459	38234804	-	DIP2268	-	putative two component system histidine kinase
2163	 62.19	+1	2361176..2361622	+	148	38234805	-	DIP2269	-	hypothetical protein
2164	 57.52	0	2361757..2363166	+	469	38234806	uhpT	DIP2270	-	sugar phosphate antiporter
2165	 48.37	-1	2363229..2363381	-	50	38234807	-	DIP2271	-	hypothetical protein
2166	 55.60	0	2363388..2364209	-	273	38234808	-	DIP2272	-	sortase-like protein
2167	 55.50	0	2364341..2365648	+	435	38234809	-	DIP2273	-	putative inner membrane protein translocase component YidC
2168	 52.95	0	2365515..2366141	-	208	38234810	-	DIP2274	-	TetR family transcriptional regulator
2169	 53.03	0	2366430..2366693	-	87	38234811	-	DIP2275	-	hypothetical protein
2170	 58.91	+1	2366976..2367878	-	300	38234812	-	DIP2276	-	hypothetical protein
2171	 59.14	+1	2368117..2369166	+	349	38234813	-	DIP2277	-	hypothetical protein
2172	 51.87	0	2375291..2376304	-	337	38234814	-	DIP2278	-	putative integral membrane protein
2173	 59.20	+1	2376306..2377175	-	289	38234815	-	DIP2279	-	ABC transporter ATP-binding protein
2174	 59.95	+1	2377172..2377558	-	128	38234816	-	DIP2280	-	GntR family transcriptional regulator
2175	 61.58	+1	2377787..2379163	+	458	38234817	-	DIP2281	-	hypothetical protein
2176	 55.42	0	2379236..2380000	-	254	38234818	-	DIP2282	-	hypothetical protein
2177	 54.43	0	2380171..2380554	-	127	38234819	-	DIP2284	-	putative thioredoxin
2178	 51.90	0	2380762..2380971	+	69	38234820	-	DIP2285	-	putative cation transport protein
2179	 57.39	0	2381127..2383358	+	743	38234821	-	DIP2286	-	putative cation-transporting P-type ATPase
2180	 64.25	+2	2383456..2384781	+	441	38234822	-	DIP2287	-	putative integral membrane transport protein
2181	 55.23	0	2384785..2386305	-	506	38234823	dnaB	DIP2288	-	replicative DNA helicase
2182	 56.73	0	2386879..2387331	-	150	38234824	rplI	DIP2289	-	50S ribosomal protein L9
2183	 61.00	+1	2387462..2388043	-	193	38234825	ssb1	DIP2290	-	single-strand DNA-binding protein
2184	 54.51	0	2388168..2388455	-	95	161598671	rpsF	DIP2291	-	30S ribosomal protein S6
2185	 47.78	-1	2388650..2388829	-	59	38234827	-	DIP2292	-	hypothetical protein
2186	 56.87	0	2388829..2390400	-	523	38234828	-	DIP2293	-	putative integral membrane protein
2187	 54.97	0	2390445..2392625	-	726	38234829	-	DIP2294	-	putative penicillin-binding protein
2188	 54.27	0	2392713..2393075	-	120	38234830	-	DIP2295	-	hypothetical protein
2189	 52.10	0	2393194..2393646	+	150	38234831	-	DIP2296	-	MarR family transcriptional regulator
2190	 58.07	0	2393656..2394621	+	321	38234832	-	DIP2297	-	hypothetical protein
2191	 60.12	+1	2394633..2395304	+	223	38234833	-	DIP2298	-	short chain dehydrogenase
2192	 56.54	0	2395316..2395789	+	157	38234834	-	DIP2299	-	putative integral membrane protein
2193	 48.82	-1	2395856..2397301	-	481	38234835	-	DIP2300	-	putative DNA-binding protein
2194	 55.27	0	2397459..2398397	-	312	38234836	-	DIP2301	-	hypothetical protein
2195	 56.81	0	2398584..2399222	+	212	38234837	-	DIP2302	-	putative integral membrane protein
2196	 56.17	0	2399360..2399845	-	161	38234838	-	DIP2303	-	putative DNA protection during starvation protein
2197	 58.48	+1	2399933..2400787	+	284	38234839	-	DIP2304	-	putative DNA repair glycosylase
2198	 61.96	+1	2400809..2402317	+	502	38234840	-	DIP2305	-	hypothetical protein
2199	 59.37	+1	2402330..2403466	-	378	38234841	-	DIP2306	-	putative hydrolase
2200	 57.26	0	2403526..2404152	-	208	38234842	-	DIP2307	-	putative integral membrane protein
2201	 55.56	0	2404326..2405387	-	353	38234843	-	DIP2308	-	hypothetical protein
2202	 52.46	0	2405722..2406678	-	318	38234844	-	DIP2309	-	putative DNA-binding protein
2203	 51.30	0	2406782..2407360	-	192	38234845	-	DIP2310	-	hypothetical protein
2204	 57.64	0	2407563..2409290	-	575	38234846	-	DIP2311	-	hypothetical protein
2205	 57.01	0	2409373..2412573	-	1066	38234847	-	DIP2312	-	putative type I restriction/modification system protein
2206	 49.48	0	2412566..2413810	-	414	38234848	-	DIP2313	-	putative type I restriction/modification system DNA specificity protein
2207	 53.98	0	2413807..2415414	-	535	38234849	-	DIP2314	-	putative type I restriction/modification system DNA methylase
2208	 52.32	0	2415495..2417453	-	652	38234850	-	DIP2315	-	DNA-binding protein
2209	 51.21	0	2417717..2418952	-	411	38234851	-	DIP2317	-	DNA-binding protein
2210	 64.79	+2	2419180..2420880	-	566	38234852	-	DIP2318	-	hypothetical protein
2211	 55.72	0	2420959..2421561	-	200	38234853	-	DIP2319	-	putative copper zinc superoxide dismutase
2212	 58.03	0	2421946..2424828	-	960	38234854	leuS	DIP2320	-	leucyl-tRNA synthetase
2213	 49.33	0	2424897..2425046	-	49	38234855	-	DIP2321	-	hypothetical protein
2214	 51.45	0	2425110..2425832	-	240	38234856	-	DIP2322	-	hypothetical protein
2215	 61.41	+1	2425889..2426554	-	221	38234857	-	DIP2323	-	ABC transporter ATP-binding protein
2216	 56.91	0	2426551..2427585	-	344	38234858	-	DIP2324	-	ABC transporter inner membrane protein
2217	 51.02	0	2427721..2430360	-	879	38234859	-	DIP2325	-	putative surface-anchored protein
2218	 55.98	0	2430452..2431705	+	417	38234860	chrS	DIP2326	-	two-component system histidine kinase ChrS
2219	 59.33	+1	2431702..2432301	+	199	38234861	chrA	DIP2327	-	two-component response regulator ChrA
2220	 58.06	0	2432298..2432843	-	181	38234862	-	DIP2328	-	integral membrane protein
2221	 56.15	0	2432940..2434841	-	633	38234863	-	DIP2329	-	integral membrane protein
2222	 45.14	-1	2435213..2436271	+	352	38234864	-	DIP2330	-	hypothetical protein
2223	 60.34	+1	2436460..2437851	+	463	38234865	-	DIP2331	-	putative aldehyde dehydrogenase
2224	 58.11	0	2438019..2438813	+	264	38234866	-	DIP2332	-	putative phosphotransferase system protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.