IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2056	 65.34	+2	2214506..2214883	-	125	38234698	-	DIP2153	-	putative bacteriophage holin protein
2057	 58.62	+1	2214765..2215559	-	264	38234699	-	DIP2154	-	putative DNA-binding bacteriophage protein
2058	 52.08	0	2215819..2216805	+	328	38234700	-	DIP2155	-	hypothetical protein
2059	 61.54	+1	2217901..2219655	-	584	38234701	-	DIP2158	-	ABC transport protein
2060	 58.75	+1	2219658..2221439	-	593	38234702	-	DIP2159	-	ABC transport protein
2061	 59.08	+1	2221492..2229396	-	2634	38234703	-	DIP2160	-	modular polyketide synthase
2062	 59.22	+1	2229393..2234573	-	1726	38234704	-	DIP2161	-	nonribosomal peptide synthase
2063	 59.80	+1	2234961..2236460	+	499	38234705	-	DIP2162	-	ABC transporter solute-binding protein
2064	 61.22	+1	2236473..2237426	+	317	38234706	-	DIP2163	-	ABC transporter permease
2065	 59.85	+1	2237423..2238244	+	273	38234707	-	DIP2164	-	ABC transporter permease
2066	 58.07	0	2238241..2239647	+	468	38234708	-	DIP2165	-	ABC transporter ATP-binding protein
2067	 56.48	0	2239756..2241060	+	434	38234709	-	DIP2166	-	ABC transporter permease
2068	 57.94	0	2241109..2241360	+	83	38234710	metE	DIP2167	-	5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (partial)
2069	 58.75	+1	2241389..2242600	+	403	38234711	-	DIP2168	-	integral membrane transport protein
2070	 56.46	0	2242597..2244075	-	492	38234712	-	DIP2169	-	hypothetical protein
2071	 57.45	0	2244077..2244868	-	263	38234713	-	DIP2170	-	hypothetical protein
2072	 54.72	0	2244892..2246574	-	560	38234714	-	DIP2171	-	hypothetical protein
2073	 58.76	+1	2246580..2247743	-	387	38234715	-	DIP2172	-	putative secreted glycosyl hydrolase
2074	 52.38	0	2247778..2247966	+	62	38234716	-	DIP2173	-	hypothetical protein
2075	 59.58	+1	2247967..2251044	+	1025	38234717	-	DIP2174	-	hypothetical protein
2076	 57.81	0	2250936..2252075	-	379	38234718	-	DIP2175	-	putative integral membrane acyltransferase
2077	 57.44	0	2252088..2253182	+	364	38234719	-	DIP2176	-	putative integral membrane protein
2078	 60.44	+1	2253173..2254585	+	470	38234720	-	DIP2177	-	putative integral membrane protein
2079	 59.13	+1	2254468..2255622	-	384	38234721	-	DIP2178	-	hypothetical protein
2080	 58.10	0	2255664..2256398	+	244	38234722	-	DIP2179	-	hypothetical protein
2081	 59.22	+1	2256423..2258261	-	612	38234723	pckG	DIP2180	-	phosphoenolpyruvate carboxykinase
2082	 59.87	+1	2258718..2259497	+	259	38234724	trmB	DIP2181	-	tRNA (guanine-N(7))-methyltransferase
2083	 61.51	+1	2259494..2260114	+	206	38234725	-	DIP2182	-	hypothetical protein
2084	 58.68	+1	2260129..2262369	+	746	38234726	-	DIP2183	-	putative integral membrane protein
2085	 59.67	+1	2262371..2263414	+	347	38234727	-	DIP2184	-	putative integral membrane protein
2086	 51.82	0	2263411..2263767	+	118	38234728	-	DIP2185	-	putative integral membrane protein
2087	 54.80	0	2266345..2267895	-	516	38234729	pccB	DIP2188	-	propionyl-CoA carboxylase complex B subunit
2088	 59.08	+1	2267907..2272667	-	1586	38234730	-	DIP2189	-	putative polyketide synthase
2089	 56.58	0	2272766..2274580	-	604	38234731	-	DIP2190	-	acyl-CoA synthase
2090	 59.32	+1	2274655..2275566	-	303	38234732	-	DIP2191	-	hypothetical protein
2091	 59.50	+1	2275572..2276087	-	171	38234733	-	DIP2192	-	hypothetical protein
2092	 57.02	0	2276087..2278003	-	638	38234734	csp1	DIP2193	-	putative secreted antigen
2093	 48.57	-1	2278364..2279380	-	338	38234735	-	DIP2194	-	putative secreted antigen
2094	 46.83	-1	2279547..2281235	-	562	38234736	-	DIP2195	-	hypothetical protein
2095	 57.87	0	2281244..2282221	-	325	38234737	-	DIP2196	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
2096	 58.59	+1	2282218..2282712	-	164	38234738	-	DIP2197	-	putative integral membrane protein
2097	 58.81	+1	2282712..2284697	-	661	38234739	-	DIP2198	-	hypothetical protein
2098	 55.62	0	2284782..2285297	-	171	38234740	-	DIP2199	-	putative integral membrane protein
2099	 57.79	0	2285338..2286915	-	525	38234741	gbsA	DIP2200	-	betaine aldehyde dehydrogenase
2100	 57.82	0	2286982..2289207	-	741	38234742	betT	DIP2201	-	high-affinity choline transport protein
2101	 57.44	0	2289560..2291272	+	570	38234743	betA	DIP2202	-	choline dehydrogenase
2102	 53.17	0	2291458..2292672	-	404	38234744	glf	DIP2203	-	UDP-galactopyranose mutase
2103	 45.45	-1	2292835..2293263	-	142	38234745	-	DIP2204	-	hypothetical protein
2104	 47.76	-1	2293316..2294341	-	341	38234746	-	DIP2205	-	putative DNA-binding protein
2105	 58.33	0	2294403..2294678	-	91	38234747	-	DIP2206	-	putative nucleotide-binding protein
2106	 60.74	+1	2295148..2296968	+	606	38234748	-	DIP2207	-	hypothetical protein
2107	 46.50	-1	2297077..2297805	-	242	38234749	-	DIP2208	-	hypothetical protein
2108	 46.08	-1	2297798..2298856	-	352	38234750	-	DIP2209	-	hypothetical protein
2109	 46.15	-1	2298912..2299496	-	194	38234751	-	DIP2210	-	hypothetical protein
2110	 47.66	-1	2299489..2301045	-	518	38234752	-	DIP2211	-	hypothetical protein
2111	 46.43	-1	2301411..2302097	+	228	38234753	-	DIP2212	-	hypothetical protein
2112	 45.72	-1	2302097..2304727	+	876	38234754	-	DIP2213	-	putative helicase
2113	 45.31	-1	2304729..2305688	+	319	38234755	-	DIP2214	-	hypothetical protein
2114	 44.13	-2	2305689..2306003	+	104	38234756	-	DIP2215	-	hypothetical protein
2115	 54.84	0	2307893..2308408	+	171	38234757	ssb2	DIP2216	-	single-strand DNA-binding protein
2116	 46.58	-1	2308427..2308660	+	77	38234758	-	DIP2217	-	putative DNA-binding protein
2117	 49.56	0	2309127..2309804	+	225	38234759	-	DIP2218	-	hypothetical protein
2118	 47.37	-1	2309879..2310220	+	113	38234760	-	DIP2219	-	hypothetical protein
2119	 45.29	-1	2310210..2310485	+	91	38234761	-	DIP2220	-	hypothetical protein
2120	 48.43	-1	2310601..2310759	-	52	38234762	-	DIP2222	-	hypothetical protein
2121	 55.68	0	2310948..2311757	-	269	38234763	-	DIP2223	-	potential surface-anchored protein
2122	 51.96	0	2311830..2312876	-	348	38234764	-	DIP2224	-	putative fimbrial associated sortase-like protein
2123	 53.19	0	2312860..2313816	-	318	38234765	-	DIP2225	-	putative fimbrial associated sortase-like protein
2124	 57.73	0	2314006..2315673	-	555	38234766	-	DIP2226	-	surface-anchored fimbrial subunit
2125	 54.77	0	2315777..2319904	-	1375	38234767	-	DIP2227	-	surface-anchored fimbrial subunit
2126	 49.18	0	2320038..2320220	+	60	38234768	-	DIP2228	-	hypothetical protein
2127	 56.39	0	2321459..2321896	+	145	38234769	-	DIP2233	-	hypothetical protein
2128	 47.04	-1	2322596..2322967	+	123	38234770	-	DIP2234	-	hypothetical protein
2129	 57.59	0	2323066..2324586	-	506	38234771	glpK	DIP2235	-	glycerol kinase
2130	 60.86	+1	2324605..2325345	-	246	38234772	glpF	DIP2236	-	glycerol uptake facilitator protein
2131	 61.65	+1	2325345..2327078	-	577	38234773	glpD	DIP2237	-	putative glycerol-3-phosphate dehydrogenase
2132	 58.65	+1	2327266..2329098	-	610	38234774	-	DIP2238	-	putative acyltransferase
2133	 57.85	0	2329111..2329938	-	275	38234775	-	DIP2239	-	hypothetical protein
2134	 58.25	0	2329968..2331227	-	419	38234776	serS	DIP2240	-	seryl-tRNA synthetase
2135	 59.26	+1	2331262..2332098	+	278	38234777	-	DIP2241	-	GntR family transcriptional regulator
2136	 60.02	+1	2332109..2333101	+	330	38234778	-	DIP2242	-	hypothetical protein
2137	 54.60	0	2333108..2333455	+	115	38234779	-	DIP2243	-	hypothetical protein
2138	 49.92	0	2333530..2334777	+	415	38234780	-	DIP2244	-	hypothetical protein
2139	 62.33	+1	2334763..2335407	-	214	38234781	-	DIP2245	-	putative phosphoglycerate mutase
2140	 63.90	+2	2335434..2336336	-	300	161598672	pheA	DIP2246	-	prephenate dehydratase
2141	 59.62	+1	2336303..2337508	+	401	38234783	-	DIP2247	-	putative amidase
2142	 58.02	0	2337505..2338221	+	238	38234784	-	DIP2248	-	putative integral membrane protein
2143	 48.91	-1	2338205..2340496	-	763	38234785	-	DIP2249	-	putative nitric-oxide reductase
2144	 60.19	+1	2340708..2342003	+	431	38234786	-	DIP2250	-	hypothetical protein
2145	 58.28	0	2342131..2343621	-	496	38234787	-	DIP2251	-	putative sodium/alanine symporter
2146	 58.25	0	2343812..2345605	+	597	38234788	-	DIP2252	-	putative integral membrane protein
2147	 60.21	+1	2345667..2346533	-	288	38234789	-	DIP2253	-	hypothetical protein
2148	 58.63	+1	2346584..2347267	-	227	38234790	-	DIP2254	-	hypothetical protein
2149	 57.68	0	2347413..2348369	-	318	38234791	ldh	DIP2255	-	L-lactate dehydrogenase
2150	 47.11	-1	2348729..2349454	-	241	38234792	-	DIP2256	-	hypothetical protein
2151	 49.02	-1	2349511..2350428	+	305	38234793	nadA	DIP2257	-	quinolinate synthetase
2152	 49.59	0	2350425..2351654	+	409	38234794	nadB	DIP2258	-	putative aspartate oxidase
2153	 46.38	-1	2351642..2352469	+	275	38234795	nadC	DIP2259	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
2154	 59.28	+1	2352676..2353338	-	220	38234796	msrA	DIP2260	-	methionine sulfoxide reductase A
2155	 54.33	0	2353492..2354091	+	199	38234797	sodA	DIP2261	-	manganese superoxide dismutase
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.