IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2019	 54.72	0	2162322..2162480	-	52	38234661	-	DIP2112	-	hypothetical protein
2020	 57.65	0	2162652..2163782	+	376	38234662	-	DIP2113	-	hypothetical protein
2021	 57.73	0	2163769..2164809	-	346	38234663	adhA	DIP2114	-	alcohol dehydrogenase
2022	 54.70	0	2164963..2166483	-	506	38234664	-	DIP2115	-	putative aldehyde dehydrogenase
2023	 44.05	-2	2166772..2168376	+	534	38234665	-	DIP2116	-	putative membrane anchored protein
2024	 56.89	0	2168433..2168831	-	132	38234666	hspR	DIP2117	-	putative chaperone locus transcriptional regulator, HspR
2025	 60.19	+1	2168853..2170025	-	390	38234667	dnaJ1	DIP2118	-	chaperone protein cofactor 1
2026	 58.79	+1	2170135..2170794	-	219	38234668	grpE	DIP2119	-	chaperone protein cofactor GrpE
2027	 55.88	0	2170794..2172629	-	611	38234669	dnaK	DIP2120	-	molecular chaperone DnaK
2028	 57.85	0	2173043..2174347	+	434	38234670	-	DIP2121	-	hypothetical protein
2029	 58.39	0	2174439..2175719	+	426	38234671	-	DIP2122	-	putative integral membrane protein
2030	 51.91	0	2175813..2176625	-	270	38234672	-	DIP2123	-	putative transposase
2031	 54.45	0	2176673..2177155	-	160	38234673	-	DIP2124	-	putative insertion element DNA-binding protein
2032	 57.94	0	2177232..2177873	-	213	38234674	-	DIP2125	-	ABC transporter ATP-binding protein
2033	 59.36	+1	2177860..2179488	-	542	38234675	-	DIP2126	-	putative binding-protein-dependent integral membrane transport protein
2034	 56.46	0	2179481..2180479	-	332	38234676	-	DIP2127	-	putative binding-protein-dependent integral membrane transport protein
2035	 51.96	0	2180480..2182084	-	534	38234677	-	DIP2128	-	putative substrate-binding transport protein
2036	 58.73	+1	2182285..2183871	-	528	38234678	-	DIP2129	-	putative binding-protein-dependent integral membrane transport protein
2037	 60.75	+1	2190630..2194346	+	1238	38234679	-	DIP2130	-	putative phosphoribosylformylglycinamidine synthase
2038	 59.56	+1	2194426..2195016	-	196	38234680	-	DIP2131	-	nucleosidase
2039	 61.55	+1	2195144..2195632	+	162	38234681	-	DIP2132	-	putative oxidoreductase
2040	 59.24	+1	2195706..2198210	+	834	38234682	-	DIP2133	-	hypothetical protein
2041	 57.17	0	2198286..2198906	+	206	38234683	-	DIP2134	-	hypothetical protein
2042	 55.13	0	2198998..2200089	-	363	38234684	-	DIP2135	-	putative zinc-binding alcohol dehydrogenase
2043	 53.62	0	2200331..2201602	+	423	38234685	-	DIP2136	-	aminotransferase AlaT
2044	 56.65	0	2201757..2202914	+	385	38234686	-	DIP2137	-	putative integral membrane protein
2045	 57.94	0	2202940..2206089	+	1049	38234687	lysS	DIP2138	-	lysyl-tRNA synthetase
2046	 60.18	+1	2206196..2206873	-	225	38234688	-	DIP2139	-	hypothetical protein
2047	 58.45	+1	2206836..2207456	-	206	38234689	-	DIP2140	-	putative integral membrane protein
2048	 59.95	+1	2207481..2208686	-	401	38234690	-	DIP2141	-	putative UDP-glucose 6-dehydrogenase
2049	 52.13	0	2208692..2209255	-	187	38234691	dcd	DIP2142	-	deoxycytidine triphosphate deaminase
2050	 49.23	0	2209550..2210329	-	259	38234692	-	DIP2143	-	ABC transporter inner membrane protein
2051	 52.76	0	2210326..2211159	-	277	38234693	-	DIP2144	-	ABC transporter ATP-binding protein
2052	 46.85	-1	2211156..2211488	-	110	38234694	-	DIP2145	-	putative integral membrane protein
2053	 56.28	0	2211488..2212180	-	230	38234695	-	DIP2146	-	putative integral membrane protein
2054	 53.21	0	2212180..2212506	-	108	38234696	-	DIP2147	-	hypothetical protein
2055	 52.33	0	2213799..2214419	-	206	38234697	-	DIP2152	-	hypothetical protein
2056	 65.34	+2	2214506..2214883	-	125	38234698	-	DIP2153	-	putative bacteriophage holin protein
2057	 58.62	+1	2214765..2215559	-	264	38234699	-	DIP2154	-	putative DNA-binding bacteriophage protein
2058	 52.08	0	2215819..2216805	+	328	38234700	-	DIP2155	-	hypothetical protein
2059	 61.54	+1	2217901..2219655	-	584	38234701	-	DIP2158	-	ABC transport protein
2060	 58.75	+1	2219658..2221439	-	593	38234702	-	DIP2159	-	ABC transport protein
2061	 59.08	+1	2221492..2229396	-	2634	38234703	-	DIP2160	-	modular polyketide synthase
2062	 59.22	+1	2229393..2234573	-	1726	38234704	-	DIP2161	-	nonribosomal peptide synthase
2063	 59.80	+1	2234961..2236460	+	499	38234705	-	DIP2162	-	ABC transporter solute-binding protein
2064	 61.22	+1	2236473..2237426	+	317	38234706	-	DIP2163	-	ABC transporter permease
2065	 59.85	+1	2237423..2238244	+	273	38234707	-	DIP2164	-	ABC transporter permease
2066	 58.07	0	2238241..2239647	+	468	38234708	-	DIP2165	-	ABC transporter ATP-binding protein
2067	 56.48	0	2239756..2241060	+	434	38234709	-	DIP2166	-	ABC transporter permease
2068	 57.94	0	2241109..2241360	+	83	38234710	metE	DIP2167	-	5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (partial)
2069	 58.75	+1	2241389..2242600	+	403	38234711	-	DIP2168	-	integral membrane transport protein
2070	 56.46	0	2242597..2244075	-	492	38234712	-	DIP2169	-	hypothetical protein
2071	 57.45	0	2244077..2244868	-	263	38234713	-	DIP2170	-	hypothetical protein
2072	 54.72	0	2244892..2246574	-	560	38234714	-	DIP2171	-	hypothetical protein
2073	 58.76	+1	2246580..2247743	-	387	38234715	-	DIP2172	-	putative secreted glycosyl hydrolase
2074	 52.38	0	2247778..2247966	+	62	38234716	-	DIP2173	-	hypothetical protein
2075	 59.58	+1	2247967..2251044	+	1025	38234717	-	DIP2174	-	hypothetical protein
2076	 57.81	0	2250936..2252075	-	379	38234718	-	DIP2175	-	putative integral membrane acyltransferase
2077	 57.44	0	2252088..2253182	+	364	38234719	-	DIP2176	-	putative integral membrane protein
2078	 60.44	+1	2253173..2254585	+	470	38234720	-	DIP2177	-	putative integral membrane protein
2079	 59.13	+1	2254468..2255622	-	384	38234721	-	DIP2178	-	hypothetical protein
2080	 58.10	0	2255664..2256398	+	244	38234722	-	DIP2179	-	hypothetical protein
2081	 59.22	+1	2256423..2258261	-	612	38234723	pckG	DIP2180	-	phosphoenolpyruvate carboxykinase
2082	 59.87	+1	2258718..2259497	+	259	38234724	trmB	DIP2181	-	tRNA (guanine-N(7))-methyltransferase
2083	 61.51	+1	2259494..2260114	+	206	38234725	-	DIP2182	-	hypothetical protein
2084	 58.68	+1	2260129..2262369	+	746	38234726	-	DIP2183	-	putative integral membrane protein
2085	 59.67	+1	2262371..2263414	+	347	38234727	-	DIP2184	-	putative integral membrane protein
2086	 51.82	0	2263411..2263767	+	118	38234728	-	DIP2185	-	putative integral membrane protein
2087	 54.80	0	2266345..2267895	-	516	38234729	pccB	DIP2188	-	propionyl-CoA carboxylase complex B subunit
2088	 59.08	+1	2267907..2272667	-	1586	38234730	-	DIP2189	-	putative polyketide synthase
2089	 56.58	0	2272766..2274580	-	604	38234731	-	DIP2190	-	acyl-CoA synthase
2090	 59.32	+1	2274655..2275566	-	303	38234732	-	DIP2191	-	hypothetical protein
2091	 59.50	+1	2275572..2276087	-	171	38234733	-	DIP2192	-	hypothetical protein
2092	 57.02	0	2276087..2278003	-	638	38234734	csp1	DIP2193	-	putative secreted antigen
2093	 48.57	-1	2278364..2279380	-	338	38234735	-	DIP2194	-	putative secreted antigen
2094	 46.83	-1	2279547..2281235	-	562	38234736	-	DIP2195	-	hypothetical protein
2095	 57.87	0	2281244..2282221	-	325	38234737	-	DIP2196	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
2096	 58.59	+1	2282218..2282712	-	164	38234738	-	DIP2197	-	putative integral membrane protein
2097	 58.81	+1	2282712..2284697	-	661	38234739	-	DIP2198	-	hypothetical protein
2098	 55.62	0	2284782..2285297	-	171	38234740	-	DIP2199	-	putative integral membrane protein
2099	 57.79	0	2285338..2286915	-	525	38234741	gbsA	DIP2200	-	betaine aldehyde dehydrogenase
2100	 57.82	0	2286982..2289207	-	741	38234742	betT	DIP2201	-	high-affinity choline transport protein
2101	 57.44	0	2289560..2291272	+	570	38234743	betA	DIP2202	-	choline dehydrogenase
2102	 53.17	0	2291458..2292672	-	404	38234744	glf	DIP2203	-	UDP-galactopyranose mutase
2103	 45.45	-1	2292835..2293263	-	142	38234745	-	DIP2204	-	hypothetical protein
2104	 47.76	-1	2293316..2294341	-	341	38234746	-	DIP2205	-	putative DNA-binding protein
2105	 58.33	0	2294403..2294678	-	91	38234747	-	DIP2206	-	putative nucleotide-binding protein
2106	 60.74	+1	2295148..2296968	+	606	38234748	-	DIP2207	-	hypothetical protein
2107	 46.50	-1	2297077..2297805	-	242	38234749	-	DIP2208	-	hypothetical protein
2108	 46.08	-1	2297798..2298856	-	352	38234750	-	DIP2209	-	hypothetical protein
2109	 46.15	-1	2298912..2299496	-	194	38234751	-	DIP2210	-	hypothetical protein
2110	 47.66	-1	2299489..2301045	-	518	38234752	-	DIP2211	-	hypothetical protein
2111	 46.43	-1	2301411..2302097	+	228	38234753	-	DIP2212	-	hypothetical protein
2112	 45.72	-1	2302097..2304727	+	876	38234754	-	DIP2213	-	putative helicase
2113	 45.31	-1	2304729..2305688	+	319	38234755	-	DIP2214	-	hypothetical protein
2114	 44.13	-2	2305689..2306003	+	104	38234756	-	DIP2215	-	hypothetical protein
2115	 54.84	0	2307893..2308408	+	171	38234757	ssb2	DIP2216	-	single-strand DNA-binding protein
2116	 46.58	-1	2308427..2308660	+	77	38234758	-	DIP2217	-	putative DNA-binding protein
2117	 49.56	0	2309127..2309804	+	225	38234759	-	DIP2218	-	hypothetical protein
2118	 47.37	-1	2309879..2310220	+	113	38234760	-	DIP2219	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.