IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1947	 63.83	+2	2077594..2078898	-	434	38234589	-	DIP2025	-	hypothetical protein
1948	 48.85	-1	2080479..2081561	-	360	38234590	-	DIP2030	-	putative NAD(P)H-dependent reductase
1949	 51.20	0	2081863..2084454	+	863	38234591	uvrA2	DIP2031	-	excinuclease ABC subunit A
1950	 51.77	0	2084696..2085232	+	178	38234592	-	DIP2032	-	putative protease
1951	 53.03	0	2085350..2085481	-	43	38234593	-	DIP2033	-	putative transposase
1952	 55.51	0	2086286..2086948	+	220	38234594	-	DIP2036	-	hypothetical protein
1953	 60.35	+1	2087440..2088801	+	453	38234595	-	DIP2037	-	hypothetical protein
1954	 60.19	+1	2088814..2089029	+	71	38234596	-	DIP2038	-	hypothetical protein
1955	 60.82	+1	2089037..2089327	+	96	38234597	-	DIP2039	-	hypothetical protein
1956	 59.86	+1	2089327..2090487	+	386	38234598	-	DIP2040	-	hypothetical protein
1957	 58.52	+1	2090430..2091509	-	359	38234599	-	DIP2042	-	carboxylate-amine ligase
1958	 59.55	+1	2091506..2092039	-	177	38234600	-	DIP2043	-	hypothetical protein
1959	 55.39	0	2092042..2092245	-	67	38234601	-	DIP2044	-	hypothetical protein
1960	 59.75	+1	2092244..2092807	+	187	38234602	def	DIP2045	-	peptide deformylase
1961	 60.81	+1	2092824..2093711	+	295	38234603	-	DIP2046	-	hypothetical protein
1962	 59.32	+1	2093716..2094423	+	235	38234604	-	DIP2047	-	putative exonuclease
1963	 58.23	0	2094420..2095853	+	477	38234605	-	DIP2048	-	putative cardiolipin synthase
1964	 56.10	0	2096446..2097183	-	245	38234606	-	DIP2049	-	ABC transporter
1965	 58.49	+1	2097167..2098096	-	309	38234607	-	DIP2050	-	ABC transporter ATP-binding protein
1966	 60.14	+1	2098098..2099354	+	418	38234608	-	DIP2051	-	hypothetical protein
1967	 57.70	0	2099351..2100298	+	315	38234609	-	DIP2052	-	ABC transporter
1968	 60.61	+1	2100295..2102457	+	720	38234610	-	DIP2053	-	putative protein kinase
1969	 55.92	0	2102477..2103676	-	399	38234611	ackA	DIP2054	-	acetate kinase
1970	 54.27	0	2103677..2105128	-	483	38234612	eutD	DIP2055	-	phosphotransacetylase
1971	 59.82	+1	2105308..2106666	+	452	38234613	-	DIP2056	-	putative ferredoxin/ferredoxin-NADP reductase
1972	 56.63	0	2106678..2107574	-	298	38234614	-	DIP2057	-	putative phosphoribosylglycinamide formyltransferase
1973	 57.68	0	2107606..2108106	+	166	38234615	-	DIP2058	-	putative purine phosphoribosyltransferase
1974	 56.35	0	2108231..2109025	+	264	38234616	-	DIP2059	-	hypothetical protein
1975	 53.67	0	2109022..2110452	-	476	38234617	-	DIP2060	-	hypothetical protein
1976	 45.24	-1	2110453..2110620	-	55	38234618	-	DIP2061	-	hypothetical protein
1977	 47.22	-1	2111093..2112964	-	623	38234619	-	DIP2062	-	putative surface anchored protein
1978	 58.53	+1	2113380..2114669	-	429	38234620	purA	DIP2063	-	adenylosuccinate synthetase
1979	 54.29	0	2114764..2114973	+	69	38234621	-	DIP2064	-	putative beta-ketoacyl-ACP synthase gene remnant
1980	 55.07	0	2115398..2115535	+	45	38234622	-	DIP2065	-	putative hydrolase gene remnant
1981	 44.68	-1	2115840..2119082	+	1080	38234623	-	DIP2066	-	putative surface-anchored fimbrial associated protein
1982	 62.30	+1	2119377..2120108	+	243	38234624	-	DIP2067	-	hypothetical protein
1983	 56.65	0	2120105..2121232	-	375	38234625	-	DIP2068	-	hypothetical protein
1984	 60.58	+1	2121346..2122479	+	377	38234626	-	DIP2069	-	hypothetical protein
1985	 55.58	0	2122571..2123752	-	393	38234627	-	DIP2070	-	hypothetical protein
1986	 42.65	-2	2124164..2125075	+	303	38234628	-	DIP2071	-	hypothetical protein
1987	 50.13	0	2125361..2126473	+	370	38234629	-	DIP2072	-	hypothetical protein
1988	 48.11	-1	2126517..2127308	+	263	38234630	-	DIP2073	-	hypothetical protein
1989	 54.37	0	2127573..2127881	+	102	38234631	-	DIP2074	-	putative tranposase
1990	 57.97	0	2127929..2128273	-	114	38234632	-	DIP2075	-	hypothetical protein
1991	 61.16	+1	2128362..2128724	+	120	38234633	-	DIP2076	-	hypothetical protein
1992	 68.39	+2	2128744..2128917	+	57	38234634	-	DIP2077	-	hypothetical protein
1993	 56.44	0	2128919..2129182	-	87	38234635	-	DIP2077A	-	hypothetical protein
1994	 53.66	0	2129194..2130531	-	445	38234636	-	DIP2078	-	inner membrane permease YgbN
1995	 55.30	0	2130534..2131430	-	298	38234637	-	DIP2079	-	putative oxidoreductase
1996	 55.17	0	2131499..2132950	-	483	38234638	-	DIP2080	-	hypothetical protein
1997	 53.36	0	2133153..2133851	-	232	38234639	-	DIP2081	-	putative transcriptional regulator
1998	 53.52	0	2135858..2137066	+	402	38234640	-	DIP2083	-	putative transposase for insertion element
1999	 49.69	0	2138047..2138529	+	160	38234641	-	DIP2085	-	putative insertion element
2000	 49.44	0	2141760..2144615	+	951	38234642	-	DIP2093	-	Sdr family related adhesin
2001	 56.43	0	2144833..2145867	-	344	38234643	fba	DIP2094	-	fructose-bisphosphate aldolase
2002	 58.16	0	2145986..2147113	-	375	38234644	-	DIP2095	-	hypothetical protein
2003	 58.77	+1	2147125..2147643	-	172	38234645	-	DIP2096	-	putative RNA methylase family protein
2004	 57.30	0	2147786..2148319	-	177	38234646	pyrE	DIP2097	-	orotate phosphoribosyltransferase
2005	 58.91	+1	2148375..2149289	-	304	38234647	-	DIP2098	-	hypothetical protein
2006	 55.27	0	2149289..2150113	-	274	38234648	-	DIP2099	-	putative sulfultransferase
2007	 51.95	0	2150259..2150489	-	76	38234649	-	DIP2100	-	hypothetical protein
2008	 52.74	0	2150689..2150889	-	66	38234650	clpB2	DIP2101	-	putative heat shock protein (partial)
2009	 36.57	-2	2151027..2151551	-	174	38234651	-	DIP2102	-	hypothetical protein
2010	 31.37	-2	2151552..2151704	-	50	38234652	-	DIP2103	-	hypothetical protein
2011	 56.43	0	2151849..2154398	-	849	38234653	clpB	DIP2104	-	putative ATP-dependent protease regulatory subunit, ClpB
2012	 61.82	+1	2154597..2154926	-	109	38234654	-	DIP2105	-	hypothetical protein
2013	 58.17	0	2155054..2155842	+	262	38234655	-	DIP2106	-	ABC transporter ATP-binding protein
2014	 57.93	0	2155844..2157412	+	522	38234656	-	DIP2107	-	putative integral membrane transport protein
2015	 57.55	0	2157906..2159243	-	445	38234657	-	DIP2108	-	putative integral membrane protein
2016	 57.16	0	2159370..2160410	-	346	38234658	-	DIP2109	-	putative integral membrane protein
2017	 59.60	+1	2160416..2161519	+	367	38234659	-	DIP2110	-	hypothetical protein
2018	 57.46	0	2161498..2162268	-	256	38234660	-	DIP2111	-	putative hydrolase
2019	 54.72	0	2162322..2162480	-	52	38234661	-	DIP2112	-	hypothetical protein
2020	 57.65	0	2162652..2163782	+	376	38234662	-	DIP2113	-	hypothetical protein
2021	 57.73	0	2163769..2164809	-	346	38234663	adhA	DIP2114	-	alcohol dehydrogenase
2022	 54.70	0	2164963..2166483	-	506	38234664	-	DIP2115	-	putative aldehyde dehydrogenase
2023	 44.05	-2	2166772..2168376	+	534	38234665	-	DIP2116	-	putative membrane anchored protein
2024	 56.89	0	2168433..2168831	-	132	38234666	hspR	DIP2117	-	putative chaperone locus transcriptional regulator, HspR
2025	 60.19	+1	2168853..2170025	-	390	38234667	dnaJ1	DIP2118	-	chaperone protein cofactor 1
2026	 58.79	+1	2170135..2170794	-	219	38234668	grpE	DIP2119	-	chaperone protein cofactor GrpE
2027	 55.88	0	2170794..2172629	-	611	38234669	dnaK	DIP2120	-	molecular chaperone DnaK
2028	 57.85	0	2173043..2174347	+	434	38234670	-	DIP2121	-	hypothetical protein
2029	 58.39	0	2174439..2175719	+	426	38234671	-	DIP2122	-	putative integral membrane protein
2030	 51.91	0	2175813..2176625	-	270	38234672	-	DIP2123	-	putative transposase
2031	 54.45	0	2176673..2177155	-	160	38234673	-	DIP2124	-	putative insertion element DNA-binding protein
2032	 57.94	0	2177232..2177873	-	213	38234674	-	DIP2125	-	ABC transporter ATP-binding protein
2033	 59.36	+1	2177860..2179488	-	542	38234675	-	DIP2126	-	putative binding-protein-dependent integral membrane transport protein
2034	 56.46	0	2179481..2180479	-	332	38234676	-	DIP2127	-	putative binding-protein-dependent integral membrane transport protein
2035	 51.96	0	2180480..2182084	-	534	38234677	-	DIP2128	-	putative substrate-binding transport protein
2036	 58.73	+1	2182285..2183871	-	528	38234678	-	DIP2129	-	putative binding-protein-dependent integral membrane transport protein
2037	 60.75	+1	2190630..2194346	+	1238	38234679	-	DIP2130	-	putative phosphoribosylformylglycinamidine synthase
2038	 59.56	+1	2194426..2195016	-	196	38234680	-	DIP2131	-	nucleosidase
2039	 61.55	+1	2195144..2195632	+	162	38234681	-	DIP2132	-	putative oxidoreductase
2040	 59.24	+1	2195706..2198210	+	834	38234682	-	DIP2133	-	hypothetical protein
2041	 57.17	0	2198286..2198906	+	206	38234683	-	DIP2134	-	hypothetical protein
2042	 55.13	0	2198998..2200089	-	363	38234684	-	DIP2135	-	putative zinc-binding alcohol dehydrogenase
2043	 53.62	0	2200331..2201602	+	423	38234685	-	DIP2136	-	aminotransferase AlaT
2044	 56.65	0	2201757..2202914	+	385	38234686	-	DIP2137	-	putative integral membrane protein
2045	 57.94	0	2202940..2206089	+	1049	38234687	lysS	DIP2138	-	lysyl-tRNA synthetase
2046	 60.18	+1	2206196..2206873	-	225	38234688	-	DIP2139	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.