IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
147	 59.77	+1	137984..138418	+	144	38232789	-	DIP0164	-	hypothetical protein
148	 60.84	+1	138415..138963	+	182	38232790	-	DIP0165	-	hypothetical protein
149	 55.95	0	138975..139394	+	139	38232791	-	DIP0166	-	hypothetical protein
150	 56.67	0	139604..140383	+	259	38232792	-	DIP0167	-	hypothetical protein
151	 63.73	+2	140517..141434	-	305	38232793	-	DIP0168	-	putative glycosyl transferase
152	 52.90	0	141608..142573	+	321	38232794	-	DIP0169	-	hypothetical protein
153	 54.56	0	142673..143407	+	244	38232795	-	DIP0170	-	hypothetical protein
154	 55.78	0	143404..144303	+	299	38232796	-	DIP0171	-	hypothetical protein
155	 56.92	0	144300..145151	+	283	38232797	-	DIP0172	-	hypothetical protein
156	 57.29	0	145272..146273	+	333	38232798	-	DIP0173	-	hypothetical protein
157	 59.49	+1	146339..147118	-	259	38232799	-	DIP0174	-	ABC transporter ATP-binding protein
158	 61.32	+1	147137..147997	-	286	38232800	-	DIP0175	-	ABC transporter permease
159	 60.97	+1	148133..149326	+	397	38232801	-	DIP0176	-	hypothetical protein
160	 60.76	+1	149323..150270	-	315	38232802	-	DIP0177	-	putative quinone oxidoreductase
161	 60.10	+1	150627..151661	-	344	38232803	-	DIP0178	-	putative aminotransferase
162	 53.08	0	152426..154000	+	524	38232804	-	DIP0179	-	hypothetical protein
163	 46.19	-1	154365..154994	+	209	38232805	-	DIP0180	-	hypothetical protein
164	 42.12	-2	155099..155371	+	90	38232806	-	DIP0181	-	hypothetical protein
165	 54.60	0	155600..156826	-	408	38232807	-	DIP0182	-	putative phage integrase
166	 53.57	0	156926..157948	-	340	38232808	-	DIP0183	-	putative transcriptional regulator
167	 55.67	0	157960..158523	-	187	38232809	-	DIP0184	-	hypothetical protein
168	 56.62	0	158618..159025	-	135	38232810	-	DIP0185	-	hypothetical protein
169	 58.64	+1	159035..159196	-	53	38232811	-	DIP0186	-	hypothetical protein
170	 55.56	0	159639..159881	+	80	38232812	-	DIP0187	-	putative transcriptional regulator
171	 57.49	0	160120..160446	-	108	38232813	-	DIP0188	-	hypothetical protein
172	 48.78	-1	160470..160961	+	163	38232814	-	DIP0189	-	hypothetical protein
173	 49.57	0	160942..161760	+	272	38232815	-	DIP0190	-	putative anti-repressor protein
174	 47.33	-1	161977..162219	+	80	38232816	-	DIP0191	-	hypothetical protein
175	 46.67	-1	162231..162455	+	74	38232817	-	DIP0192	-	hypothetical protein
176	 51.02	0	162452..162598	+	48	38232818	-	DIP0193	-	hypothetical protein
177	 55.93	0	162606..162875	+	89	38232819	-	DIP0194	-	hypothetical protein
178	 46.67	-1	162868..163017	+	49	38232820	-	DIP0195	-	hypothetical protein
179	 49.10	-1	163014..163457	+	147	38232821	-	DIP0196	-	hypothetical protein
180	 52.99	0	163482..163715	+	77	38232822	-	DIP0197	-	hypothetical protein
181	 50.16	0	163814..164122	+	102	38232823	-	DIP0197A	-	hypothetical protein
182	 57.07	0	164151..165359	+	402	38232824	-	DIP0198	-	hypothetical protein
183	 51.06	0	165352..165966	+	204	38232825	-	DIP0199	-	hypothetical protein
184	 55.35	0	166018..166335	+	105	38232826	-	DIP0200	-	hypothetical protein
185	 52.92	0	168436..169686	+	416	38232827	-	DIP0203	-	hypothetical protein
186	 50.48	0	169683..170726	+	347	38232828	-	DIP0204	-	putative phage prohead protease
187	 53.40	0	170723..171973	+	416	38232829	-	DIP0205	-	putative phage capsid protein
188	 52.24	0	171973..172173	+	66	38232830	-	DIP0206	-	hypothetical protein
189	 54.45	0	172195..172677	+	160	38232831	-	DIP0207	-	hypothetical protein
190	 51.79	0	172674..173036	+	120	38232832	-	DIP0208	-	hypothetical protein
191	 55.10	0	173002..173295	+	97	38232833	-	DIP0208A	-	hypothetical protein
192	 52.12	0	173285..173662	+	125	38232834	-	DIP0209	-	hypothetical protein
193	 52.00	0	173691..174638	+	315	38232835	-	DIP0210	-	hypothetical protein
194	 53.17	0	174736..175113	+	125	38232836	-	DIP0211	-	hypothetical protein
195	 50.48	0	175275..175484	+	69	38232837	-	DIP0211A	-	hypothetical protein
196	 53.43	0	175497..181139	+	1880	38232838	-	DIP0212	-	immunity-specific protein Beta241
197	 50.33	0	181149..181901	+	250	38232839	beta201	DIP0213	-	immunity-specific protein Beta201
198	 52.15	0	181902..182762	+	286	38232840	beta286	DIP0214	-	immunity-specific protein Beta286
199	 52.42	0	182762..183877	+	371	38232841	beta371	DIP0215	-	immunity-specific protein Beta371
200	 55.25	0	183877..185304	+	475	38232842	-	DIP0216	-	putative phage tail fiber protein
201	 50.37	0	185304..185978	+	224	38232843	-	DIP0217	-	hypothetical protein
202	 54.44	0	186059..187498	+	479	38232844	-	DIP0218	-	hypothetical protein
203	 53.40	0	187501..187824	+	107	38232845	-	DIP0219	-	hypothetical protein
204	 56.13	0	187830..188294	+	154	38232846	-	DIP0220	-	hypothetical protein
205	 52.21	0	188291..188629	+	112	38232847	-	DIP0221	-	hypothetical protein
206	 42.54	-2	188979..190661	+	560	38232848	tox	DIP0222	-	diphtheria toxin precursor
207	 57.63	0	190816..190992	+	58	38232849	-	DIP0223	-	hypothetical protein
208	 47.52	-1	191070..191210	+	46	38232850	-	DIP0224	-	hypothetical protein
209	 57.64	0	191220..192626	+	468	38232851	-	DIP0225	-	putative secreted polysaccharide deacetylase
210	 62.01	+1	192614..193987	-	457	38232852	-	DIP0226	-	GntR family regulator
211	 57.38	0	194078..194971	+	297	38232853	-	DIP0227	-	pyridoxine biosynthesis protein
212	 60.93	+1	194965..195522	+	185	38232854	-	DIP0228	-	glutamine amidotransferase subunit PdxT
213	 56.55	0	195519..195686	-	55	38232855	-	DIP0229	-	hypothetical protein
214	 63.57	+2	197202..197330	-	42	38232856	-	DIP0232	-	hypothetical protein
215	 64.75	+2	197338..198327	-	329	38232857	-	DIP0233	-	putative fimbrial associated sortase-like protein
216	 49.90	0	198371..198847	+	158	38232858	-	DIP0234	-	hypothetical protein
217	 55.87	0	198862..200334	+	490	38232859	-	DIP0235	-	putative fimbrial subunit
218	 59.64	+1	200435..201373	+	312	38232860	-	DIP0236	-	putative fimbrial associated sortase-like protein
219	 66.67	+2	201366..202157	+	263	38232861	-	DIP0237	-	putative surface anchored protein
220	 54.39	0	202163..205282	+	1039	38232862	-	DIP0238	-	putative surface-anchored fimbrial subunit
221	 65.69	+2	205903..206310	-	135	38232863	-	DIP0240	-	hypothetical protein
222	 62.67	+1	206336..206485	-	49	38232864	-	DIP0241	-	hypothetical protein
223	 42.31	-2	206740..207051	-	103	38232865	-	DIP0242	-	putative IS element transposase
224	 44.10	-2	207298..207492	-	64	38232866	-	DIP0243	-	hypothetical protein
225	 53.33	0	207638..208117	-	159	38232867	-	DIP0244	-	hypothetical protein
226	 57.86	0	208253..209263	-	336	38232868	-	DIP0245	-	prephenate dehydrogenase
227	 58.72	+1	209301..209753	+	150	38232869	-	DIP0246	-	hypothetical protein
228	 65.77	+2	209792..210235	+	147	38232870	-	DIP0247	-	putative cytosine deaminase
229	 48.34	-1	210640..211152	+	170	38232871	-	DIP0248	-	putative excisionase
230	 50.75	0	211399..211599	+	66	38232872	-	DIP0249	-	hypothetical protein
231	 57.12	0	211613..213949	+	778	38232873	-	DIP0250	-	hypothetical protein
232	 60.09	+1	214616..215908	+	430	38232874	-	DIP0251	-	putative tRNA-ribosyltransferase
233	 62.08	+1	215918..216811	+	297	38232875	-	DIP0252	-	glutamyl-Q tRNA(Asp) synthetase
234	 63.28	+2	216891..218279	+	462	38232876	gntP	DIP0253	-	gluconate permease
235	 56.55	0	218276..218779	-	167	38232877	-	DIP0254	-	putative transferase
236	 54.29	0	218871..219080	-	69	38232878	-	DIP0255	-	hypothetical protein
237	 57.14	0	219238..219384	+	48	38232879	-	DIP0256	-	hypothetical protein
238	 54.52	0	219574..220833	+	419	38232880	-	DIP0257	-	hypothetical protein
239	 58.88	+1	220837..221388	+	183	38232881	-	DIP0258	-	hypothetical protein
240	 62.15	+1	221399..223522	+	707	38232882	dnaX	DIP0259	-	DNA polymerase III subunits gamma and tau
241	 56.07	0	223595..223915	+	106	38232883	-	DIP0260	-	hypothetical protein
242	 59.06	+1	223919..224575	+	218	38232884	recR	DIP0261	-	recombination protein RecR
243	 61.49	+1	224581..225333	-	250	38232885	-	DIP0262	-	hypothetical protein
244	 64.13	+2	225335..226597	-	420	38232886	-	DIP0263	-	hypothetical protein
245	 58.20	0	226618..227739	-	373	38232887	-	DIP0264	-	DNA polymerase III subunit epsilon
246	 57.12	0	227743..228507	-	254	38232888	-	DIP0265	-	putative nitroreductase
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.