IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1890	 58.63	+1	2016061..2016819	+	252	38234532	-	DIP1968	-	putative trehalose-phosphatase
1891	 60.70	+1	2016782..2017921	-	379	38234533	-	DIP1969	-	LacI family transcriptional regulator
1892	 60.40	+1	2017931..2018872	-	313	38234534	-	DIP1970	-	SpoU rRNA methylase family protein
1893	 58.41	+1	2018900..2020291	-	463	38234535	cysS	DIP1971	-	cysteinyl-tRNA synthetase
1894	 58.80	+1	2020310..2020792	-	160	38234536	ispF	DIP1972	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1895	 57.96	0	2020785..2021519	-	244	38234537	ispD	DIP1973	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1896	 56.19	0	2021529..2022110	-	193	38234538	-	DIP1974	-	putative CarD-like transcriptional factor
1897	 59.54	+1	2022342..2022944	-	200	38234539	-	DIP1975	-	hypothetical protein
1898	 54.38	0	2023051..2024442	-	463	38234540	-	DIP1976	-	hypothetical protein
1899	 56.68	0	2024799..2026190	+	463	38234541	-	DIP1977	-	DNA repair protein RadA
1900	 54.11	0	2026218..2026934	-	238	38234542	-	DIP1978	-	hypothetical protein
1901	 56.35	0	2027004..2027633	-	209	38234543	-	DIP1979	-	putative carbonic anhydrase
1902	 59.12	+1	2027764..2028651	+	295	38234544	-	DIP1980	-	putative DNA repair protein
1903	 59.49	+1	2028648..2029901	-	417	38234545	-	DIP1981	-	hypothetical protein
1904	 54.39	0	2030032..2030202	-	56	38234546	-	DIP1982	-	hypothetical protein
1905	 57.77	0	2030233..2032884	-	883	38234547	clpC	DIP1983	-	ATP-dependent Clp protease ATP-binding subunit
1906	 53.07	0	2033317..2033772	-	151	38234548	-	DIP1984	-	hypothetical protein
1907	 56.03	0	2033808..2034446	+	212	38234549	-	DIP1985	-	hypothetical protein
1908	 54.06	0	2034499..2035347	+	282	38234550	-	DIP1986	-	hypothetical protein
1909	 59.37	+1	2035873..2037435	-	520	38234551	lysS	DIP1987	-	lysyl-tRNA synthetase
1910	 59.53	+1	2037819..2038799	+	326	38234552	-	DIP1988	-	hypothetical protein
1911	 54.81	0	2038819..2039577	-	252	38234553	-	DIP1989	-	hypothetical protein
1912	 52.71	0	2039574..2040497	-	307	38234554	-	DIP1990	-	ABC transporter ATP-binding protein
1913	 57.48	0	2040971..2041939	+	322	38234555	-	DIP1991	-	hypothetical protein
1914	 55.81	0	2042051..2043478	+	475	38234556	-	DIP1992	-	sodium/dicarboxylate symporter family protein
1915	 55.90	0	2043495..2044274	-	259	38234557	panC	DIP1993	-	pantoate--beta-alanine ligase
1916	 58.65	+1	2044287..2044910	-	207	38234558	-	DIP1994	-	hypothetical protein
1917	 55.01	0	2044907..2045824	-	305	38234559	-	DIP1995	-	hypothetical protein
1918	 59.19	+1	2045826..2046293	-	155	38234560	-	DIP1996	-	hypothetical protein
1919	 59.79	+1	2046290..2046769	-	159	38234561	folK	DIP1997	-	putative 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
1920	 53.83	0	2046779..2047144	-	121	38234562	-	DIP1998	-	putative dihydroneopterin aldolase
1921	 62.84	+1	2047150..2047986	-	278	38234563	-	DIP1999	-	putative dihydropteroate synthase
1922	 65.40	+2	2048110..2048424	-	104	38234564	-	DIP2000	-	hypothetical protein
1923	 58.46	+1	2048427..2048999	-	190	38234565	folE	DIP2001	-	GTP cyclohydrolase I
1924	 59.27	+1	2049007..2051481	-	824	38234566	ftsH	DIP2002	-	cell division protein
1925	 52.13	0	2051613..2052176	-	187	38234567	hpt	DIP2003	-	hypoxanthine-guanine phosphoribosyltransferase
1926	 63.58	+2	2052221..2053063	-	280	38234568	-	DIP2004	-	hypothetical protein
1927	 60.11	+1	2053092..2054372	-	426	38234569	-	DIP2005	-	putative D-Ala D-Ala carboxypeptidase
1928	 54.72	0	2054407..2054883	+	158	38234570	ppa	DIP2006	-	inorganic pyrophosphatase
1929	 56.23	0	2055040..2055336	+	98	38234571	-	DIP2007	-	hypothetical protein
1930	 56.49	0	2055410..2055871	+	153	38234572	-	DIP2008	-	MarR family regulatory protein
1931	 61.30	+1	2055872..2059675	+	1267	38234573	-	DIP2009	-	putative peptide synthase
1932	 46.50	-1	2059672..2065290	-	1872	38234574	-	DIP2010	-	putative surface-anchored membrane protein
1933	 59.87	+1	2065294..2065911	-	205	38234575	-	DIP2011	-	putative surface anchored protein
1934	 59.20	+1	2065901..2066770	-	289	38234576	-	DIP2012	-	putative fimbrial associated sortase-like protein
1935	 53.74	0	2066771..2068348	-	525	38234577	-	DIP2013	-	putative surface-anchored fimbrial subunit
1936	 45.82	-1	2068581..2069309	+	242	38234578	-	DIP2014	-	putative membrane-anchored protein
1937	 50.86	0	2069482..2070753	+	423	38234579	-	DIP2015	-	putative exported lipase
1938	 48.61	-1	2070770..2071666	-	298	38234580	-	DIP2016	-	hypothetical protein
1939	 45.83	-1	2071758..2073029	-	423	38234581	-	DIP2017	-	hypothetical protein
1940	 43.97	-2	2073112..2073252	-	46	38234582	-	DIP2018	-	hypothetical protein
1941	 44.12	-2	2073342..2073647	-	101	38234583	-	DIP2019	-	putative transposase
1942	 55.76	0	2073868..2075508	-	546	38234584	groEL	DIP2020	-	chaperonin GroEL
1943	 57.31	0	2075866..2076036	-	56	38234585	-	DIP2021	-	hypothetical protein
1944	 45.83	-1	2076283..2076546	-	87	38234586	-	DIP2022	-	hypothetical protein
1945	 56.40	0	2076614..2077324	+	236	38234587	-	DIP2023	-	hypothetical protein
1946	 55.26	0	2077317..2077544	-	75	38234588	-	DIP2024	-	hypothetical protein
1947	 63.83	+2	2077594..2078898	-	434	38234589	-	DIP2025	-	hypothetical protein
1948	 48.85	-1	2080479..2081561	-	360	38234590	-	DIP2030	-	putative NAD(P)H-dependent reductase
1949	 51.20	0	2081863..2084454	+	863	38234591	uvrA2	DIP2031	-	excinuclease ABC subunit A
1950	 51.77	0	2084696..2085232	+	178	38234592	-	DIP2032	-	putative protease
1951	 53.03	0	2085350..2085481	-	43	38234593	-	DIP2033	-	putative transposase
1952	 55.51	0	2086286..2086948	+	220	38234594	-	DIP2036	-	hypothetical protein
1953	 60.35	+1	2087440..2088801	+	453	38234595	-	DIP2037	-	hypothetical protein
1954	 60.19	+1	2088814..2089029	+	71	38234596	-	DIP2038	-	hypothetical protein
1955	 60.82	+1	2089037..2089327	+	96	38234597	-	DIP2039	-	hypothetical protein
1956	 59.86	+1	2089327..2090487	+	386	38234598	-	DIP2040	-	hypothetical protein
1957	 58.52	+1	2090430..2091509	-	359	38234599	-	DIP2042	-	carboxylate-amine ligase
1958	 59.55	+1	2091506..2092039	-	177	38234600	-	DIP2043	-	hypothetical protein
1959	 55.39	0	2092042..2092245	-	67	38234601	-	DIP2044	-	hypothetical protein
1960	 59.75	+1	2092244..2092807	+	187	38234602	def	DIP2045	-	peptide deformylase
1961	 60.81	+1	2092824..2093711	+	295	38234603	-	DIP2046	-	hypothetical protein
1962	 59.32	+1	2093716..2094423	+	235	38234604	-	DIP2047	-	putative exonuclease
1963	 58.23	0	2094420..2095853	+	477	38234605	-	DIP2048	-	putative cardiolipin synthase
1964	 56.10	0	2096446..2097183	-	245	38234606	-	DIP2049	-	ABC transporter
1965	 58.49	+1	2097167..2098096	-	309	38234607	-	DIP2050	-	ABC transporter ATP-binding protein
1966	 60.14	+1	2098098..2099354	+	418	38234608	-	DIP2051	-	hypothetical protein
1967	 57.70	0	2099351..2100298	+	315	38234609	-	DIP2052	-	ABC transporter
1968	 60.61	+1	2100295..2102457	+	720	38234610	-	DIP2053	-	putative protein kinase
1969	 55.92	0	2102477..2103676	-	399	38234611	ackA	DIP2054	-	acetate kinase
1970	 54.27	0	2103677..2105128	-	483	38234612	eutD	DIP2055	-	phosphotransacetylase
1971	 59.82	+1	2105308..2106666	+	452	38234613	-	DIP2056	-	putative ferredoxin/ferredoxin-NADP reductase
1972	 56.63	0	2106678..2107574	-	298	38234614	-	DIP2057	-	putative phosphoribosylglycinamide formyltransferase
1973	 57.68	0	2107606..2108106	+	166	38234615	-	DIP2058	-	putative purine phosphoribosyltransferase
1974	 56.35	0	2108231..2109025	+	264	38234616	-	DIP2059	-	hypothetical protein
1975	 53.67	0	2109022..2110452	-	476	38234617	-	DIP2060	-	hypothetical protein
1976	 45.24	-1	2110453..2110620	-	55	38234618	-	DIP2061	-	hypothetical protein
1977	 47.22	-1	2111093..2112964	-	623	38234619	-	DIP2062	-	putative surface anchored protein
1978	 58.53	+1	2113380..2114669	-	429	38234620	purA	DIP2063	-	adenylosuccinate synthetase
1979	 54.29	0	2114764..2114973	+	69	38234621	-	DIP2064	-	putative beta-ketoacyl-ACP synthase gene remnant
1980	 55.07	0	2115398..2115535	+	45	38234622	-	DIP2065	-	putative hydrolase gene remnant
1981	 44.68	-1	2115840..2119082	+	1080	38234623	-	DIP2066	-	putative surface-anchored fimbrial associated protein
1982	 62.30	+1	2119377..2120108	+	243	38234624	-	DIP2067	-	hypothetical protein
1983	 56.65	0	2120105..2121232	-	375	38234625	-	DIP2068	-	hypothetical protein
1984	 60.58	+1	2121346..2122479	+	377	38234626	-	DIP2069	-	hypothetical protein
1985	 55.58	0	2122571..2123752	-	393	38234627	-	DIP2070	-	hypothetical protein
1986	 42.65	-2	2124164..2125075	+	303	38234628	-	DIP2071	-	hypothetical protein
1987	 50.13	0	2125361..2126473	+	370	38234629	-	DIP2072	-	hypothetical protein
1988	 48.11	-1	2126517..2127308	+	263	38234630	-	DIP2073	-	hypothetical protein
1989	 54.37	0	2127573..2127881	+	102	38234631	-	DIP2074	-	putative tranposase
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.