IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1828	 56.81	0	1953232..1954803	+	523	38234470	-	DIP1900	-	ABC transporter ATP-binding protein
1829	 58.91	+1	1954800..1956347	+	515	38234471	-	DIP1901	-	ABC transporter ATP-binding protein
1830	 56.50	0	1956426..1957979	-	517	38234472	cat1	DIP1902	-	succinyl-CoA:coenzyme A transferase
1831	 60.94	+1	1958274..1959425	+	383	38234473	-	DIP1903	-	hypothetical protein
1832	 58.57	+1	1959444..1960196	+	250	38234474	-	DIP1904	-	hypothetical protein
1833	 53.99	0	1960346..1960558	-	70	38234475	-	DIP1905	-	hypothetical protein
1834	 54.75	0	1961506..1962369	-	287	38234476	pstA	DIP1908	-	phosphate transport system permease protein
1835	 61.01	+1	1962383..1963408	-	341	38234477	pstC	DIP1909	-	phosphate transport system permease protein
1836	 53.41	0	1963421..1964506	-	361	38234478	-	DIP1910	-	putative phosphate-binding periplasmic protein
1837	 55.04	0	1964778..1965689	-	303	38234479	-	DIP1911	-	putative acetyltransferase
1838	 59.08	+1	1965728..1966531	+	267	38234480	-	DIP1912	-	hypothetical protein
1839	 55.13	0	1966561..1967583	-	340	38234481	-	DIP1913	-	hypothetical protein
1840	 57.67	0	1967623..1968300	+	225	38234482	-	DIP1915	-	hypothetical protein
1841	 56.30	0	1968307..1969203	-	298	38234483	-	DIP1916	-	4-amino-4-deoxychorismate lyase
1842	 56.21	0	1969299..1970360	+	353	38234484	-	DIP1917	-	hypothetical protein
1843	 52.17	0	1970581..1970787	+	68	38234485	-	DIP1918	-	hypothetical protein
1844	 59.62	+1	1970918..1971982	-	354	38234486	purM	DIP1919	-	phosphoribosylaminoimidazole synthetase
1845	 57.56	0	1972042..1973523	-	493	38234487	purF	DIP1920	-	amidophosphoribosyltransferase
1846	 60.35	+1	1973657..1974052	-	131	38234488	-	DIP1921	-	hypothetical protein
1847	 60.46	+1	1974391..1975179	-	262	38234489	-	DIP1922	-	hypothetical protein
1848	 53.52	0	1975317..1975742	+	141	38234490	nrdI	DIP1923	-	ribonucleotide reductase stimulatory protein
1849	 54.97	0	1975739..1976764	+	341	38234491	nrdF	DIP1924	-	ribonucleotide-diphosphate reductase subunit beta
1850	 50.32	0	1978463..1978933	-	156	38234492	-	DIP1925	-	putative glutathione peroxidase
1851	 53.76	0	1978935..1981064	-	709	38234493	-	DIP1926	-	putative prolyl oligopeptidase
1852	 54.81	0	1981355..1982248	-	297	38234494	hemH	DIP1927	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1853	 54.86	0	1982334..1983773	-	479	38234495	purB	DIP1928	-	adenylosuccinate lyase
1854	 57.08	0	1983773..1984909	-	378	38234496	-	DIP1929	-	putative aspartate aminotransferase
1855	 53.12	0	1984920..1985576	-	218	38234497	-	DIP1930	-	hypothetical protein
1856	 55.21	0	1985569..1986903	-	444	38234498	-	DIP1931	-	sodium transport protein
1857	 57.73	0	1986987..1988273	-	428	38234499	purD	DIP1932	-	phosphoribosylamine--glycine ligase
1858	 53.99	0	1988352..1988777	+	141	38234500	-	DIP1933	-	HIT family protein
1859	 54.80	0	1988794..1989459	+	221	38234501	-	DIP1934	-	hypothetical protein
1860	 52.95	0	1989473..1991032	-	519	38234502	-	DIP1935	-	putative two somponent system sensor kinase protein
1861	 47.26	-1	1991068..1991778	-	236	38234503	-	DIP1936	-	putative two component system response regulator protein
1862	 51.50	0	1992160..1992726	+	188	38234504	-	DIP1937	-	hypothetical protein
1863	 52.75	0	1992696..1992968	+	90	38234505	-	DIP1938	-	hypothetical protein
1864	 46.03	-1	1992968..1993156	+	62	38234506	-	DIP1939	-	hypothetical protein
1865	 55.78	0	1993265..1993411	+	48	38234507	-	DIP1940	-	hypothetical protein
1866	 51.53	0	1993436..1994935	+	499	38234508	-	DIP1941	-	hypothetical protein
1867	 50.56	0	1994922..1995542	+	206	38234509	-	DIP1942	-	TetR family regulatory protein
1868	 54.18	0	1995598..1997511	+	637	38234510	-	DIP1943	-	xanthine/uracil permeases family protein
1869	 61.13	+1	1998063..1998857	+	264	38234511	tnpA2	DIP1944	-	transposase
1870	 59.91	+1	1998829..1999494	-	221	38234512	-	DIP1947	-	integrase
1871	 61.50	+1	1999595..2000446	+	283	38234513	-	DIP1948	-	dihydropteroate synthase
1872	 65.07	+2	2000574..2001074	+	166	38234514	-	DIP1949	-	putative acetyltransferase
1873	 60.76	+1	2001098..2001385	+	95	38234515	-	DIP1950	-	hypothetical protein
1874	 61.13	+1	2001551..2002345	+	264	38234516	tnpA3	DIP1951	-	transposase
1875	 55.90	0	2002457..2004193	-	578	38234517	-	DIP1952	-	pyruvate dehydrogenase
1876	 59.57	+1	2004306..2005757	+	483	38234518	-	DIP1953	-	putative amino acid export carrier protein
1877	 51.36	0	2006198..2007007	-	269	38234519	-	DIP1955	-	putative transposase
1878	 54.79	0	2007058..2007495	-	145	38234520	-	DIP1956	-	hypothetical protein
1879	 51.55	0	2007631..2007888	-	85	38234521	-	DIP1957	-	hypothetical protein
1880	 54.58	0	2008028..2008507	+	159	38234522	-	DIP1958	-	putative DNA-binding protein
1881	 53.02	0	2008563..2008877	+	104	38234523	-	DIP1959	-	hypothetical protein
1882	 46.22	-1	2009016..2009465	+	149	38234524	-	DIP1960	-	hypothetical protein
1883	 41.00	-2	2009462..2009800	+	112	38234525	-	DIP1961	-	hypothetical protein
1884	 49.56	0	2009896..2010234	-	112	38234526	-	DIP1962	-	hypothetical protein
1885	 48.97	-1	2010331..2011782	+	483	38234527	-	DIP1963	-	transposase
1886	 54.37	0	2012164..2013708	+	514	38234528	-	DIP1964	-	putative amino acid export carrier protein
1887	 51.88	0	2013769..2014113	+	114	38234529	-	DIP1965	-	hypothetical protein
1888	 53.68	0	2014122..2015561	+	479	38234530	-	DIP1966	-	putative glycosyltransferase
1889	 56.60	0	2015595..2016071	+	158	38234531	-	DIP1967	-	hypothetical protein
1890	 58.63	+1	2016061..2016819	+	252	38234532	-	DIP1968	-	putative trehalose-phosphatase
1891	 60.70	+1	2016782..2017921	-	379	38234533	-	DIP1969	-	LacI family transcriptional regulator
1892	 60.40	+1	2017931..2018872	-	313	38234534	-	DIP1970	-	SpoU rRNA methylase family protein
1893	 58.41	+1	2018900..2020291	-	463	38234535	cysS	DIP1971	-	cysteinyl-tRNA synthetase
1894	 58.80	+1	2020310..2020792	-	160	38234536	ispF	DIP1972	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1895	 57.96	0	2020785..2021519	-	244	38234537	ispD	DIP1973	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1896	 56.19	0	2021529..2022110	-	193	38234538	-	DIP1974	-	putative CarD-like transcriptional factor
1897	 59.54	+1	2022342..2022944	-	200	38234539	-	DIP1975	-	hypothetical protein
1898	 54.38	0	2023051..2024442	-	463	38234540	-	DIP1976	-	hypothetical protein
1899	 56.68	0	2024799..2026190	+	463	38234541	-	DIP1977	-	DNA repair protein RadA
1900	 54.11	0	2026218..2026934	-	238	38234542	-	DIP1978	-	hypothetical protein
1901	 56.35	0	2027004..2027633	-	209	38234543	-	DIP1979	-	putative carbonic anhydrase
1902	 59.12	+1	2027764..2028651	+	295	38234544	-	DIP1980	-	putative DNA repair protein
1903	 59.49	+1	2028648..2029901	-	417	38234545	-	DIP1981	-	hypothetical protein
1904	 54.39	0	2030032..2030202	-	56	38234546	-	DIP1982	-	hypothetical protein
1905	 57.77	0	2030233..2032884	-	883	38234547	clpC	DIP1983	-	ATP-dependent Clp protease ATP-binding subunit
1906	 53.07	0	2033317..2033772	-	151	38234548	-	DIP1984	-	hypothetical protein
1907	 56.03	0	2033808..2034446	+	212	38234549	-	DIP1985	-	hypothetical protein
1908	 54.06	0	2034499..2035347	+	282	38234550	-	DIP1986	-	hypothetical protein
1909	 59.37	+1	2035873..2037435	-	520	38234551	lysS	DIP1987	-	lysyl-tRNA synthetase
1910	 59.53	+1	2037819..2038799	+	326	38234552	-	DIP1988	-	hypothetical protein
1911	 54.81	0	2038819..2039577	-	252	38234553	-	DIP1989	-	hypothetical protein
1912	 52.71	0	2039574..2040497	-	307	38234554	-	DIP1990	-	ABC transporter ATP-binding protein
1913	 57.48	0	2040971..2041939	+	322	38234555	-	DIP1991	-	hypothetical protein
1914	 55.81	0	2042051..2043478	+	475	38234556	-	DIP1992	-	sodium/dicarboxylate symporter family protein
1915	 55.90	0	2043495..2044274	-	259	38234557	panC	DIP1993	-	pantoate--beta-alanine ligase
1916	 58.65	+1	2044287..2044910	-	207	38234558	-	DIP1994	-	hypothetical protein
1917	 55.01	0	2044907..2045824	-	305	38234559	-	DIP1995	-	hypothetical protein
1918	 59.19	+1	2045826..2046293	-	155	38234560	-	DIP1996	-	hypothetical protein
1919	 59.79	+1	2046290..2046769	-	159	38234561	folK	DIP1997	-	putative 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
1920	 53.83	0	2046779..2047144	-	121	38234562	-	DIP1998	-	putative dihydroneopterin aldolase
1921	 62.84	+1	2047150..2047986	-	278	38234563	-	DIP1999	-	putative dihydropteroate synthase
1922	 65.40	+2	2048110..2048424	-	104	38234564	-	DIP2000	-	hypothetical protein
1923	 58.46	+1	2048427..2048999	-	190	38234565	folE	DIP2001	-	GTP cyclohydrolase I
1924	 59.27	+1	2049007..2051481	-	824	38234566	ftsH	DIP2002	-	cell division protein
1925	 52.13	0	2051613..2052176	-	187	38234567	hpt	DIP2003	-	hypoxanthine-guanine phosphoribosyltransferase
1926	 63.58	+2	2052221..2053063	-	280	38234568	-	DIP2004	-	hypothetical protein
1927	 60.11	+1	2053092..2054372	-	426	38234569	-	DIP2005	-	putative D-Ala D-Ala carboxypeptidase
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.