IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1792	 55.40	0	1907448..1909142	-	564	38234434	ctaD	DIP1864	-	cytochrome C oxidase polypeptide I
1793	 50.35	0	1909504..1910490	-	328	38234435	nrdF	DIP1865	-	ribonucleotide-diphosphate reductase subunit beta
1794	 53.70	0	1910803..1911288	+	161	38234436	-	DIP1866	-	putative bacterioferritin
1795	 52.64	0	1911340..1913499	-	719	38234437	nrdE	DIP1867	-	ribonucleotide-diphosphate reductase subunit alpha
1796	 51.88	0	1913549..1913974	-	141	38234438	nrdI	DIP1868	-	ribonucleotide reductase stimulatory protein
1797	 56.41	0	1914068..1914301	-	77	38234439	-	DIP1869	-	hypothetical protein
1798	 59.79	+1	1914603..1915475	+	290	38234440	-	DIP1870	-	putative phytoene synthase
1799	 60.58	+1	1915468..1916994	+	508	38234441	-	DIP1871	-	phytoene dehydrogenase related enzyme
1800	 55.28	0	1917063..1917185	-	40	38234442	rpmJ	DIP1872	-	50S ribosomal protein L36
1801	 58.73	+1	1917354..1918172	+	272	38234443	nadE	DIP1873	-	NAD synthetase
1802	 50.68	0	1918169..1918606	-	145	38234444	-	DIP1874	-	hypothetical protein
1803	 47.90	-1	1918653..1918961	-	102	38234445	-	DIP1875	-	hypothetical protein
1804	 50.04	0	1918965..1920353	-	462	38234446	-	DIP1876	-	putative multicopper oxidase
1805	 50.50	0	1920343..1921635	-	430	38234447	-	DIP1877	-	hypothetical protein
1806	 51.62	0	1921639..1922748	-	369	38234448	-	DIP1878	-	hypothetical protein
1807	 55.26	0	1922840..1923505	+	221	38234449	-	DIP1879	-	putative DNA-biding protein
1808	 51.84	0	1923706..1924440	-	244	38234450	-	DIP1880	-	hypothetical protein
1809	 50.99	0	1924490..1924942	-	150	38234451	-	DIP1881	-	hypothetical protein
1810	 57.08	0	1924981..1926618	-	545	38234452	pgm	DIP1882	-	phosphoglucomutase
1811	 58.68	+1	1926684..1926971	+	95	38234453	ccrB	DIP1883	-	camphor resistance protein CrcB
1812	 58.73	+1	1926968..1927282	+	104	38234454	-	DIP1884	-	hypothetical protein
1813	 52.44	0	1927279..1929843	-	854	38234455	-	DIP1885	-	ABC transporter permease
1814	 50.67	0	1929844..1930593	-	249	38234456	-	DIP1886	-	ABC transporter ATP-binding protein
1815	 56.25	0	1937107..1938363	-	418	38234457	murA	DIP1887	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1816	 54.17	0	1938402..1938977	+	191	38234458	-	DIP1888	-	hypothetical protein
1817	 54.37	0	1939030..1939875	-	281	38234459	-	DIP1889	-	putative transcriptional regulator
1818	 56.52	0	1940558..1941493	+	311	38234460	-	DIP1890	-	putative cysteine synthase
1819	 59.26	+1	1941600..1942166	+	188	38234461	cysE	DIP1891	-	serine acetyltransferase
1820	 53.90	0	1942208..1942489	-	93	38234462	-	DIP1892	-	hypothetical protein
1821	 53.30	0	1942871..1943947	-	358	38234463	-	DIP1893	-	hypothetical protein
1822	 52.39	0	1944430..1947027	-	865	38234464	-	DIP1894	-	hypothetical protein
1823	 56.51	0	1947027..1948868	-	613	38234465	-	DIP1895	-	putative DNA methylase
1824	 54.97	0	1949307..1949477	+	56	38234466	-	DIP1896	-	putative transposase (partial)
1825	 47.88	-1	1949524..1949853	+	109	38234467	-	DIP1897	-	putative transposase (partial)
1826	 54.37	0	1950742..1952253	+	503	38234468	-	DIP1898	-	putative cytochrome ubiquinol oxidase subunit
1827	 53.64	0	1952261..1953235	+	324	38234469	-	DIP1899	-	putative cytochrome ubiquinol oxidase subunit
1828	 56.81	0	1953232..1954803	+	523	38234470	-	DIP1900	-	ABC transporter ATP-binding protein
1829	 58.91	+1	1954800..1956347	+	515	38234471	-	DIP1901	-	ABC transporter ATP-binding protein
1830	 56.50	0	1956426..1957979	-	517	38234472	cat1	DIP1902	-	succinyl-CoA:coenzyme A transferase
1831	 60.94	+1	1958274..1959425	+	383	38234473	-	DIP1903	-	hypothetical protein
1832	 58.57	+1	1959444..1960196	+	250	38234474	-	DIP1904	-	hypothetical protein
1833	 53.99	0	1960346..1960558	-	70	38234475	-	DIP1905	-	hypothetical protein
1834	 54.75	0	1961506..1962369	-	287	38234476	pstA	DIP1908	-	phosphate transport system permease protein
1835	 61.01	+1	1962383..1963408	-	341	38234477	pstC	DIP1909	-	phosphate transport system permease protein
1836	 53.41	0	1963421..1964506	-	361	38234478	-	DIP1910	-	putative phosphate-binding periplasmic protein
1837	 55.04	0	1964778..1965689	-	303	38234479	-	DIP1911	-	putative acetyltransferase
1838	 59.08	+1	1965728..1966531	+	267	38234480	-	DIP1912	-	hypothetical protein
1839	 55.13	0	1966561..1967583	-	340	38234481	-	DIP1913	-	hypothetical protein
1840	 57.67	0	1967623..1968300	+	225	38234482	-	DIP1915	-	hypothetical protein
1841	 56.30	0	1968307..1969203	-	298	38234483	-	DIP1916	-	4-amino-4-deoxychorismate lyase
1842	 56.21	0	1969299..1970360	+	353	38234484	-	DIP1917	-	hypothetical protein
1843	 52.17	0	1970581..1970787	+	68	38234485	-	DIP1918	-	hypothetical protein
1844	 59.62	+1	1970918..1971982	-	354	38234486	purM	DIP1919	-	phosphoribosylaminoimidazole synthetase
1845	 57.56	0	1972042..1973523	-	493	38234487	purF	DIP1920	-	amidophosphoribosyltransferase
1846	 60.35	+1	1973657..1974052	-	131	38234488	-	DIP1921	-	hypothetical protein
1847	 60.46	+1	1974391..1975179	-	262	38234489	-	DIP1922	-	hypothetical protein
1848	 53.52	0	1975317..1975742	+	141	38234490	nrdI	DIP1923	-	ribonucleotide reductase stimulatory protein
1849	 54.97	0	1975739..1976764	+	341	38234491	nrdF	DIP1924	-	ribonucleotide-diphosphate reductase subunit beta
1850	 50.32	0	1978463..1978933	-	156	38234492	-	DIP1925	-	putative glutathione peroxidase
1851	 53.76	0	1978935..1981064	-	709	38234493	-	DIP1926	-	putative prolyl oligopeptidase
1852	 54.81	0	1981355..1982248	-	297	38234494	hemH	DIP1927	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1853	 54.86	0	1982334..1983773	-	479	38234495	purB	DIP1928	-	adenylosuccinate lyase
1854	 57.08	0	1983773..1984909	-	378	38234496	-	DIP1929	-	putative aspartate aminotransferase
1855	 53.12	0	1984920..1985576	-	218	38234497	-	DIP1930	-	hypothetical protein
1856	 55.21	0	1985569..1986903	-	444	38234498	-	DIP1931	-	sodium transport protein
1857	 57.73	0	1986987..1988273	-	428	38234499	purD	DIP1932	-	phosphoribosylamine--glycine ligase
1858	 53.99	0	1988352..1988777	+	141	38234500	-	DIP1933	-	HIT family protein
1859	 54.80	0	1988794..1989459	+	221	38234501	-	DIP1934	-	hypothetical protein
1860	 52.95	0	1989473..1991032	-	519	38234502	-	DIP1935	-	putative two somponent system sensor kinase protein
1861	 47.26	-1	1991068..1991778	-	236	38234503	-	DIP1936	-	putative two component system response regulator protein
1862	 51.50	0	1992160..1992726	+	188	38234504	-	DIP1937	-	hypothetical protein
1863	 52.75	0	1992696..1992968	+	90	38234505	-	DIP1938	-	hypothetical protein
1864	 46.03	-1	1992968..1993156	+	62	38234506	-	DIP1939	-	hypothetical protein
1865	 55.78	0	1993265..1993411	+	48	38234507	-	DIP1940	-	hypothetical protein
1866	 51.53	0	1993436..1994935	+	499	38234508	-	DIP1941	-	hypothetical protein
1867	 50.56	0	1994922..1995542	+	206	38234509	-	DIP1942	-	TetR family regulatory protein
1868	 54.18	0	1995598..1997511	+	637	38234510	-	DIP1943	-	xanthine/uracil permeases family protein
1869	 61.13	+1	1998063..1998857	+	264	38234511	tnpA2	DIP1944	-	transposase
1870	 59.91	+1	1998829..1999494	-	221	38234512	-	DIP1947	-	integrase
1871	 61.50	+1	1999595..2000446	+	283	38234513	-	DIP1948	-	dihydropteroate synthase
1872	 65.07	+2	2000574..2001074	+	166	38234514	-	DIP1949	-	putative acetyltransferase
1873	 60.76	+1	2001098..2001385	+	95	38234515	-	DIP1950	-	hypothetical protein
1874	 61.13	+1	2001551..2002345	+	264	38234516	tnpA3	DIP1951	-	transposase
1875	 55.90	0	2002457..2004193	-	578	38234517	-	DIP1952	-	pyruvate dehydrogenase
1876	 59.57	+1	2004306..2005757	+	483	38234518	-	DIP1953	-	putative amino acid export carrier protein
1877	 51.36	0	2006198..2007007	-	269	38234519	-	DIP1955	-	putative transposase
1878	 54.79	0	2007058..2007495	-	145	38234520	-	DIP1956	-	hypothetical protein
1879	 51.55	0	2007631..2007888	-	85	38234521	-	DIP1957	-	hypothetical protein
1880	 54.58	0	2008028..2008507	+	159	38234522	-	DIP1958	-	putative DNA-binding protein
1881	 53.02	0	2008563..2008877	+	104	38234523	-	DIP1959	-	hypothetical protein
1882	 46.22	-1	2009016..2009465	+	149	38234524	-	DIP1960	-	hypothetical protein
1883	 41.00	-2	2009462..2009800	+	112	38234525	-	DIP1961	-	hypothetical protein
1884	 49.56	0	2009896..2010234	-	112	38234526	-	DIP1962	-	hypothetical protein
1885	 48.97	-1	2010331..2011782	+	483	38234527	-	DIP1963	-	transposase
1886	 54.37	0	2012164..2013708	+	514	38234528	-	DIP1964	-	putative amino acid export carrier protein
1887	 51.88	0	2013769..2014113	+	114	38234529	-	DIP1965	-	hypothetical protein
1888	 53.68	0	2014122..2015561	+	479	38234530	-	DIP1966	-	putative glycosyltransferase
1889	 56.60	0	2015595..2016071	+	158	38234531	-	DIP1967	-	hypothetical protein
1890	 58.63	+1	2016061..2016819	+	252	38234532	-	DIP1968	-	putative trehalose-phosphatase
1891	 60.70	+1	2016782..2017921	-	379	38234533	-	DIP1969	-	LacI family transcriptional regulator
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.