IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1747	 45.96	-1	1866950..1867234	+	94	38234389	-	DIP1818	-	hypothetical protein
1748	 48.18	-1	1867227..1867556	+	109	38234390	-	DIP1819	-	hypothetical protein
1749	 52.50	0	1867754..1867873	+	39	38234391	-	DIP1820	-	hypothetical protein
1750	 60.16	+1	1867939..1868061	+	40	38234392	-	DIP1821	-	hypothetical protein
1751	 55.72	0	1868441..1868842	+	133	38234393	-	DIP1822	-	hypothetical protein
1752	 58.42	+1	1868835..1869113	+	92	38234394	-	DIP1823	-	HNH endonuclease family protein
1753	 60.70	+1	1869496..1870953	+	485	38234395	-	DIP1824	-	putative phage terminase protein
1754	 60.00	+1	1871192..1872241	+	349	38234396	-	DIP1825	-	hypothetical protein
1755	 55.98	0	1872225..1872776	+	183	38234397	-	DIP1826	-	hypothetical protein
1756	 61.11	+1	1872831..1873118	-	95	38234398	-	DIP1827	-	hypothetical protein
1757	 56.48	0	1873196..1874599	+	467	38234399	-	DIP1828	-	hypothetical protein
1758	 56.41	0	1874599..1874910	+	103	38234400	-	DIP1829	-	hypothetical protein
1759	 53.82	0	1874955..1875281	+	108	38234401	-	DIP1830	-	hypothetical protein
1760	 48.23	-1	1875281..1875703	+	140	38234402	-	DIP1831	-	hypothetical protein
1761	 55.56	0	1875706..1876119	+	137	38234403	-	DIP1832	-	hypothetical protein
1762	 48.40	-1	1876119..1876430	+	103	38234404	-	DIP1833	-	hypothetical protein
1763	 53.83	0	1876508..1878073	+	521	38234405	-	DIP1834	-	hypothetical protein
1764	 47.90	-1	1878067..1879254	+	395	38234406	-	DIP1835	-	hypothetical protein
1765	 57.79	0	1879255..1880043	+	262	38234407	-	DIP1836	-	triple helix repeat-containing collagen
1766	 58.46	+1	1880040..1880855	-	271	38234408	-	DIP1837	-	putative phage integrase
1767	 45.00	-1	1881329..1881508	-	59	38234409	-	DIP1838	-	hypothetical protein
1768	 56.43	0	1881693..1882151	+	152	38234410	-	DIP1840	-	hypothetical protein
1769	 56.21	0	1882155..1882460	-	101	38234411	-	DIP1841	-	hypothetical protein
1770	 55.07	0	1882473..1882748	-	91	38234412	-	DIP1842	-	hypothetical protein
1771	 57.17	0	1882837..1883310	+	157	38234413	bcp	DIP1843	-	bacterioferritin comigratory protein
1772	 60.47	+1	1883311..1883955	+	214	38234414	-	DIP1844	-	TetR family regulatory protein
1773	 60.68	+1	1883952..1884335	-	127	38234415	acpS	DIP1845	-	4'-phosphopantetheinyl transferase
1774	 59.55	+1	1884370..1893303	-	2977	38234416	fas	DIP1846	-	putative fatty acid synthase
1775	 53.17	0	1893482..1893859	-	125	38234417	-	DIP1847	-	hypothetical protein
1776	 52.12	0	1894158..1894535	+	125	38234418	-	DIP1848	-	hypothetical protein
1777	 53.78	0	1894563..1894919	+	118	38234419	-	DIP1849	-	hypothetical protein
1778	 59.78	+1	1894916..1895539	-	207	38234420	-	DIP1850	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1779	 57.99	0	1895536..1896261	-	241	38234421	rph	DIP1851	-	ribonuclease PH
1780	 56.90	0	1896272..1897090	-	272	38234422	-	DIP1852	-	hypothetical protein
1781	 56.14	0	1897092..1897889	-	265	38234423	murI	DIP1853	-	glutamate racemase
1782	 56.37	0	1897886..1898458	-	190	38234424	-	DIP1854	-	hypothetical protein
1783	 61.31	+1	1898455..1899387	-	310	38234425	-	DIP1855	-	hypothetical protein
1784	 55.68	0	1899387..1899923	-	178	38234426	-	DIP1856	-	hypothetical protein
1785	 52.92	0	1899940..1900281	-	113	38234427	clpS	DIP1857	-	ATP-dependent Clp protease adaptor protein ClpS
1786	 55.33	0	1900343..1901656	+	437	38234428	-	DIP1858	-	nicotinate phosphoribosyltransferase
1787	 53.95	0	1901706..1903655	+	649	38234429	-	DIP1859	-	DeaD/DeaH family helicase
1788	 49.05	-1	1903657..1904184	+	175	38234430	-	DIP1860	-	acetyltransferase (GNAT) family protein
1789	 54.50	0	1904274..1905374	+	366	38234431	-	DIP1861	-	hypothetical protein
1790	 53.53	0	1905358..1906065	-	235	38234432	-	DIP1862	-	hypothetical protein
1791	 53.61	0	1906058..1907290	-	410	38234433	-	DIP1863	-	putative hydrolase
1792	 55.40	0	1907448..1909142	-	564	38234434	ctaD	DIP1864	-	cytochrome C oxidase polypeptide I
1793	 50.35	0	1909504..1910490	-	328	38234435	nrdF	DIP1865	-	ribonucleotide-diphosphate reductase subunit beta
1794	 53.70	0	1910803..1911288	+	161	38234436	-	DIP1866	-	putative bacterioferritin
1795	 52.64	0	1911340..1913499	-	719	38234437	nrdE	DIP1867	-	ribonucleotide-diphosphate reductase subunit alpha
1796	 51.88	0	1913549..1913974	-	141	38234438	nrdI	DIP1868	-	ribonucleotide reductase stimulatory protein
1797	 56.41	0	1914068..1914301	-	77	38234439	-	DIP1869	-	hypothetical protein
1798	 59.79	+1	1914603..1915475	+	290	38234440	-	DIP1870	-	putative phytoene synthase
1799	 60.58	+1	1915468..1916994	+	508	38234441	-	DIP1871	-	phytoene dehydrogenase related enzyme
1800	 55.28	0	1917063..1917185	-	40	38234442	rpmJ	DIP1872	-	50S ribosomal protein L36
1801	 58.73	+1	1917354..1918172	+	272	38234443	nadE	DIP1873	-	NAD synthetase
1802	 50.68	0	1918169..1918606	-	145	38234444	-	DIP1874	-	hypothetical protein
1803	 47.90	-1	1918653..1918961	-	102	38234445	-	DIP1875	-	hypothetical protein
1804	 50.04	0	1918965..1920353	-	462	38234446	-	DIP1876	-	putative multicopper oxidase
1805	 50.50	0	1920343..1921635	-	430	38234447	-	DIP1877	-	hypothetical protein
1806	 51.62	0	1921639..1922748	-	369	38234448	-	DIP1878	-	hypothetical protein
1807	 55.26	0	1922840..1923505	+	221	38234449	-	DIP1879	-	putative DNA-biding protein
1808	 51.84	0	1923706..1924440	-	244	38234450	-	DIP1880	-	hypothetical protein
1809	 50.99	0	1924490..1924942	-	150	38234451	-	DIP1881	-	hypothetical protein
1810	 57.08	0	1924981..1926618	-	545	38234452	pgm	DIP1882	-	phosphoglucomutase
1811	 58.68	+1	1926684..1926971	+	95	38234453	ccrB	DIP1883	-	camphor resistance protein CrcB
1812	 58.73	+1	1926968..1927282	+	104	38234454	-	DIP1884	-	hypothetical protein
1813	 52.44	0	1927279..1929843	-	854	38234455	-	DIP1885	-	ABC transporter permease
1814	 50.67	0	1929844..1930593	-	249	38234456	-	DIP1886	-	ABC transporter ATP-binding protein
1815	 56.25	0	1937107..1938363	-	418	38234457	murA	DIP1887	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1816	 54.17	0	1938402..1938977	+	191	38234458	-	DIP1888	-	hypothetical protein
1817	 54.37	0	1939030..1939875	-	281	38234459	-	DIP1889	-	putative transcriptional regulator
1818	 56.52	0	1940558..1941493	+	311	38234460	-	DIP1890	-	putative cysteine synthase
1819	 59.26	+1	1941600..1942166	+	188	38234461	cysE	DIP1891	-	serine acetyltransferase
1820	 53.90	0	1942208..1942489	-	93	38234462	-	DIP1892	-	hypothetical protein
1821	 53.30	0	1942871..1943947	-	358	38234463	-	DIP1893	-	hypothetical protein
1822	 52.39	0	1944430..1947027	-	865	38234464	-	DIP1894	-	hypothetical protein
1823	 56.51	0	1947027..1948868	-	613	38234465	-	DIP1895	-	putative DNA methylase
1824	 54.97	0	1949307..1949477	+	56	38234466	-	DIP1896	-	putative transposase (partial)
1825	 47.88	-1	1949524..1949853	+	109	38234467	-	DIP1897	-	putative transposase (partial)
1826	 54.37	0	1950742..1952253	+	503	38234468	-	DIP1898	-	putative cytochrome ubiquinol oxidase subunit
1827	 53.64	0	1952261..1953235	+	324	38234469	-	DIP1899	-	putative cytochrome ubiquinol oxidase subunit
1828	 56.81	0	1953232..1954803	+	523	38234470	-	DIP1900	-	ABC transporter ATP-binding protein
1829	 58.91	+1	1954800..1956347	+	515	38234471	-	DIP1901	-	ABC transporter ATP-binding protein
1830	 56.50	0	1956426..1957979	-	517	38234472	cat1	DIP1902	-	succinyl-CoA:coenzyme A transferase
1831	 60.94	+1	1958274..1959425	+	383	38234473	-	DIP1903	-	hypothetical protein
1832	 58.57	+1	1959444..1960196	+	250	38234474	-	DIP1904	-	hypothetical protein
1833	 53.99	0	1960346..1960558	-	70	38234475	-	DIP1905	-	hypothetical protein
1834	 54.75	0	1961506..1962369	-	287	38234476	pstA	DIP1908	-	phosphate transport system permease protein
1835	 61.01	+1	1962383..1963408	-	341	38234477	pstC	DIP1909	-	phosphate transport system permease protein
1836	 53.41	0	1963421..1964506	-	361	38234478	-	DIP1910	-	putative phosphate-binding periplasmic protein
1837	 55.04	0	1964778..1965689	-	303	38234479	-	DIP1911	-	putative acetyltransferase
1838	 59.08	+1	1965728..1966531	+	267	38234480	-	DIP1912	-	hypothetical protein
1839	 55.13	0	1966561..1967583	-	340	38234481	-	DIP1913	-	hypothetical protein
1840	 57.67	0	1967623..1968300	+	225	38234482	-	DIP1915	-	hypothetical protein
1841	 56.30	0	1968307..1969203	-	298	38234483	-	DIP1916	-	4-amino-4-deoxychorismate lyase
1842	 56.21	0	1969299..1970360	+	353	38234484	-	DIP1917	-	hypothetical protein
1843	 52.17	0	1970581..1970787	+	68	38234485	-	DIP1918	-	hypothetical protein
1844	 59.62	+1	1970918..1971982	-	354	38234486	purM	DIP1919	-	phosphoribosylaminoimidazole synthetase
1845	 57.56	0	1972042..1973523	-	493	38234487	purF	DIP1920	-	amidophosphoribosyltransferase
1846	 60.35	+1	1973657..1974052	-	131	38234488	-	DIP1921	-	hypothetical protein
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.