IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1631	 54.10	0	1740467..1740649	+	60	38234273	-	DIP1702	-	hypothetical protein
1632	 52.44	0	1740639..1741910	-	423	38234274	-	DIP1703	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1633	 55.01	0	1741917..1742594	-	225	38234275	-	DIP1704	-	hypothetical protein
1634	 56.20	0	1742648..1744654	+	668	38234276	-	DIP1705	-	hypothetical protein
1635	 58.90	+1	1744651..1745049	-	132	38234277	-	DIP1706	-	hypothetical protein
1636	 50.95	0	1745055..1745582	-	175	38234278	-	DIP1707	-	hypothetical protein
1637	 54.62	0	1745608..1746993	-	461	38234279	glyS	DIP1708	-	glycyl-tRNA synthetase
1638	 43.92	-2	1747304..1747681	+	125	38234280	-	DIP1709	-	ArsR family transcriptional regulator
1639	 51.52	0	1747858..1748286	+	142	38234281	-	DIP1710	-	putative ferric uptake regulatory protein
1640	 52.81	0	1748293..1749288	-	331	38234282	-	DIP1711	-	hypothetical protein
1641	 53.93	0	1749363..1750100	-	245	38234283	-	DIP1712	-	putative undecaprenyl phosphate synthetase
1642	 54.05	0	1750120..1750848	-	242	38234284	recO	DIP1713	-	DNA repair protein RecO
1643	 52.72	0	1750848..1751765	-	305	38234285	era	DIP1714	-	GTP-binding protein Era
1644	 54.70	0	1751817..1752677	-	286	38234286	-	DIP1715	-	pyridoxamine kinase
1645	 51.77	0	1752679..1754007	-	442	38234287	-	DIP1716	-	hypothetical protein
1646	 56.01	0	1754004..1754594	-	196	38234288	-	DIP1717	-	putative metalloprotease
1647	 50.36	0	1754595..1755563	-	322	38234289	-	DIP1718	-	putative PhoH-like protein
1648	 57.31	0	1755611..1756369	-	252	38234290	-	DIP1719	-	hypothetical protein
1649	 55.50	0	1756371..1757498	-	375	38234291	dnaJ2	DIP1720	-	chaperone protein 2
1650	 53.56	0	1757572..1758609	-	345	38234292	hrcA	DIP1721	-	heat-inducible transcription repressor
1651	 56.17	0	1758649..1759782	-	377	38234293	hemN	DIP1722	-	coproporphyrinogen III oxidase
1652	 54.76	0	1759772..1760443	-	223	38234294	-	DIP1723	-	hypothetical protein
1653	 47.92	-1	1760582..1763809	-	1075	38234295	-	DIP1724	-	putative surface-anchored membrane protein
1654	 53.99	0	1763886..1765715	-	609	38234296	-	DIP1725	-	putative long-chain-fatty-acid-CoA ligase
1655	 55.97	0	1765812..1767980	+	722	38234297	-	DIP1726	-	putative glucanotransferase
1656	 56.86	0	1768127..1768330	-	67	38234298	-	DIP1727	-	hypothetical protein
1657	 53.18	0	1768327..1770306	-	659	38234299	-	DIP1728	-	putative peptidase
1658	 55.75	0	1770335..1771534	+	399	38234300	-	DIP1729	-	putative drug resistance protein (hydrolase)
1659	 50.18	0	1771521..1772072	-	183	38234301	idi	DIP1730	-	isopentenyl-diphosphate delta-isomerase
1660	 50.48	0	1772091..1773665	-	524	38234302	-	DIP1731	-	hypothetical protein
1661	 45.08	-1	1773666..1774244	-	192	38234303	-	DIP1732	-	hypothetical protein
1662	 43.26	-2	1774501..1775658	-	385	38234304	-	DIP1733	-	hypothetical protein
1663	 47.20	-1	1775840..1776250	-	136	38234305	-	DIP1734	-	hypothetical protein
1664	 48.54	-1	1776468..1778315	+	615	38234306	-	DIP1735	-	ABC transporter ATP-binding protein
1665	 50.75	0	1778334..1779464	+	376	38234307	aecD	DIP1736	-	beta C-S lyase
1666	 55.48	0	1779545..1780849	+	434	38234308	brnQ	DIP1737	-	branched-chain amino acid ABC transport system membrane protein
1667	 56.71	0	1780859..1781812	+	317	38234309	-	DIP1738	-	hypothetical protein
1668	 53.42	0	1781790..1783616	-	608	38234310	ectP	DIP1739	-	ectoine, glycine betaine and proline transport system membrane protein
1669	 52.19	0	1783772..1785298	+	508	38234311	-	DIP1740	-	ABC transporter solute-binding protein
1670	 53.38	0	1785305..1786252	+	315	38234312	-	DIP1741	-	putative oligopeptide ABC transport system membrane protein
1671	 58.52	+1	1786256..1787077	+	273	38234313	-	DIP1742	-	putative oligopeptide ABC transport system membrane protein
1672	 55.23	0	1787074..1788516	+	480	38234314	-	DIP1743	-	ABC transporter ATP-binding protein
1673	 53.17	0	1788659..1789873	-	404	38234315	-	DIP1744	-	putative prolyl aminopeptidase
1674	 53.75	0	1789874..1790539	+	221	38234316	-	DIP1745	-	hypothetical protein
1675	 54.64	0	1790536..1791924	+	462	38234317	-	DIP1746	-	putative xylulose kinase
1676	 58.87	+1	1791955..1792185	+	76	38234318	-	DIP1747	-	hypothetical protein
1677	 58.36	0	1792489..1794102	+	537	38234319	-	DIP1748	-	putative oxidase
1678	 54.65	0	1794114..1794371	+	85	38234320	-	DIP1749	-	hypothetical protein
1679	 53.29	0	1794357..1795889	-	510	38234321	-	DIP1750	-	putative potassium transport related membrane protein
1680	 47.95	-1	1795929..1796147	+	72	38234322	-	DIP1751	-	hypothetical protein
1681	 56.55	0	1796249..1797652	+	467	38234323	-	DIP1752	-	antibiotic ABC transporter
1682	 56.98	0	1797649..1798587	+	312	38234324	iunH	DIP1753	-	inosine-uridine preferring nucleoside hydrolase
1683	 58.86	+1	1798593..1799399	+	268	38234325	-	DIP1754	-	hypothetical protein
1684	 55.91	0	1799436..1800095	+	219	38234326	-	DIP1755	-	hypothetical protein
1685	 50.81	0	1800239..1803019	+	926	38234327	-	DIP1756	-	putative DNA methyltransferase
1686	 49.49	0	1803016..1803906	+	296	38234328	-	DIP1757	-	putative Mrr restriction system protein
1687	 50.72	0	1803982..1804326	-	114	38234329	-	DIP1758	-	hypothetical protein
1688	 42.53	-2	1804436..1805272	-	278	38234330	-	DIP1759	-	hypothetical protein
1689	 43.01	-2	1805322..1805507	-	61	38234331	-	DIP1760	-	hypothetical protein
1690	 50.96	0	1805784..1806617	+	277	38234332	-	DIP1761	-	hypothetical protein
1691	 48.54	-1	1806618..1807301	+	227	38234333	-	DIP1762	-	hypothetical protein
1692	 47.90	-1	1807896..1809062	-	388	38234334	-	DIP1763	-	hypothetical protein
1693	 57.03	0	1809198..1811045	-	615	38234335	lepA	DIP1764	-	GTP-binding protein LepA
1694	 56.99	0	1811324..1811881	+	185	38234336	-	DIP1765	-	hypothetical protein
1695	 57.20	0	1812042..1812305	+	87	38234337	rpsT	DIP1766	-	30S ribosomal protein S20
1696	 56.18	0	1812354..1812992	-	212	38234338	-	DIP1767	-	putative LysE type translocator
1697	 55.72	0	1812982..1813383	-	133	38234339	-	DIP1768	-	hypothetical protein
1698	 58.56	+1	1813394..1814368	-	324	38234340	-	DIP1769	-	hypothetical protein
1699	 57.47	0	1814322..1815995	-	557	38234341	-	DIP1770	-	hypothetical protein
1700	 57.94	0	1815992..1816621	-	209	38234342	-	DIP1771	-	hypothetical protein
1701	 56.08	0	1816728..1817549	-	273	38234343	-	DIP1772	-	hypothetical protein
1702	 59.89	+1	1817554..1818276	-	240	38234344	-	DIP1773	-	phosphoglycerate mutase family protein
1703	 57.69	0	1818283..1818750	-	155	38234345	-	DIP1774	-	hypothetical protein
1704	 56.48	0	1818773..1819459	-	228	38234346	nadD	DIP1775	-	nicotinic acid mononucleotide adenylyltransferase
1705	 56.61	0	1819483..1820775	-	430	38234347	proA	DIP1776	-	gamma-glutamyl phosphate reductase
1706	 58.00	0	1820793..1821923	-	376	38234348	proB	DIP1777	-	gamma-glutamyl kinase
1707	 56.35	0	1821944..1822195	-	83	38234349	-	DIP1778	-	hypothetical protein
1708	 58.61	+1	1822199..1823725	-	508	38234350	obgE	DIP1779	-	GTPase ObgE
1709	 57.30	0	1823886..1824152	-	88	38234351	rpmA	DIP1780	-	50S ribosomal protein L27
1710	 55.23	0	1824193..1824498	-	101	38234352	rplU	DIP1781	-	50S ribosomal protein L21
1711	 56.59	0	1824673..1827561	-	962	38234353	-	DIP1782	-	putative RNA-associated protein
1712	 58.39	0	1827843..1828277	-	144	38234354	ndk	DIP1783	-	nucleoside diphosphate kinase
1713	 53.86	0	1828445..1828858	-	137	38234355	-	DIP1784	-	hypothetical protein
1714	 59.52	+1	1828855..1830351	-	498	38234356	-	DIP1785	-	Mur ligase family protein
1715	 57.10	0	1830348..1833107	-	919	38234357	valS	DIP1786	-	valyl-tRNA synthetase
1716	 55.96	0	1833151..1834131	-	326	38234358	mdh	DIP1787	-	malate dehydrogenase
1717	 55.11	0	1834614..1835366	+	250	38234359	-	DIP1788	-	TetR family regulatory protein
1718	 53.44	0	1835403..1836695	-	430	38234360	clpX	DIP1789	-	ATP-dependent protease ATP-binding subunit
1719	 58.65	+1	1836842..1839373	-	843	38234361	-	DIP1790	-	glutamine amidotransferase protein
1720	 57.14	0	1839462..1840091	-	209	38234362	clpP2	DIP1791	-	ATP-dependent Clp protease proteolytic subunit
1721	 54.33	0	1840109..1840708	-	199	38234363	clpP	DIP1792	-	ATP-dependent Clp protease proteolytic subunit
1722	 57.02	0	1840874..1842220	-	448	38234364	tig	DIP1793	-	trigger factor
1723	 56.54	0	1843047..1843283	+	78	38234365	-	DIP1794	-	hypothetical protein
1724	 55.94	0	1843430..1844212	+	260	38234366	-	DIP1795	-	hypothetical protein
1725	 56.75	0	1844289..1844762	-	157	38234367	-	DIP1796	-	ribose-5-phosphate isomerase B
1726	 58.45	+1	1844794..1845414	-	206	38234368	-	DIP1797	-	hypothetical protein
1727	 54.03	0	1845536..1848154	+	872	38234369	-	DIP1798	-	putative aminopeptidase
1728	 56.34	0	1848410..1849426	+	338	38234370	-	DIP1799	-	putative mechanosensitive ion channel protein
1729	 57.76	0	1849438..1849830	+	130	38234371	-	DIP1800	-	putative hemoglobin
1730	 58.94	+1	1849827..1850447	-	206	38234372	-	DIP1801	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.