IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1586	 52.04	0	1690224..1690688	-	154	38234228	-	DIP1655	-	hypothetical protein
1587	 48.37	-1	1691457..1693697	+	746	38234229	-	DIP1656	-	hypothetical protein
1588	 45.13	-1	1693807..1694001	+	64	38234230	-	DIP1657	-	hypothetical protein
1589	 49.77	0	1694157..1695038	-	293	38234231	-	DIP1658	-	putative membrane-anchored protein
1590	 52.58	0	1695397..1696269	-	290	38234232	-	DIP1659	-	hypothetical protein
1591	 48.57	-1	1696679..1696888	-	69	38234233	-	DIP1660	-	hypothetical protein
1592	 49.67	0	1697001..1698353	-	450	38234234	-	DIP1661	-	hypothetical protein
1593	 52.19	0	1698485..1699168	+	227	38234235	-	DIP1662	-	GntR family transcriptional regulator
1594	 55.56	0	1699190..1700449	+	419	38234236	-	DIP1663	-	MFS family transporter
1595	 54.00	0	1700446..1700982	-	178	38234237	-	DIP1664	-	hypothetical protein
1596	 47.62	-1	1701013..1701159	-	48	38234238	-	DIP1665	-	hypothetical protein
1597	 49.21	0	1701262..1702710	-	482	38234239	thrC	DIP1666	-	threonine synthase
1598	 53.90	0	1702727..1703674	+	315	38234240	-	DIP1667	-	hypothetical protein
1599	 53.33	0	1703671..1703940	-	89	38234241	-	DIP1668	-	hypothetical protein
1600	 54.32	0	1704009..1704656	-	215	38234242	hmuO	DIP1669	-	heme oxygenase
1601	 53.84	0	1704796..1707960	-	1054	38234243	glnE	DIP1670	-	adenylyltransferase
1602	 53.69	0	1708011..1709351	-	446	38234244	glnA2	DIP1671	-	glutamine synthetase II
1603	 50.48	0	1709494..1711068	+	524	38234245	-	DIP1672	-	hypothetical protein
1604	 48.44	-1	1711078..1711269	-	63	38234246	-	DIP1673	-	hypothetical protein
1605	 54.17	0	1711326..1712669	+	447	38234247	-	DIP1674	-	hypothetical protein
1606	 48.73	-1	1714046..1714753	-	235	38234248	-	DIP1677	-	hypothetical protein
1607	 52.91	0	1715369..1716502	-	377	38234249	-	DIP1678	-	bifunctional RNase H/acid phosphatase
1608	 54.39	0	1716502..1717218	-	238	38234250	-	DIP1679	-	hypothetical protein
1609	 53.03	0	1717298..1718434	-	378	38234251	-	DIP1680	-	hypothetical protein
1610	 52.95	0	1718437..1719471	-	344	38234252	-	DIP1681	-	hypothetical protein
1611	 51.78	0	1719502..1720146	+	214	38234253	-	DIP1682	-	putative phosphoglycolate phosphatase
1612	 53.90	0	1720169..1720630	+	153	38234254	-	DIP1683	-	low molecular weight protein-tyrosine-phosphatase
1613	 52.52	0	1720659..1721492	+	277	38234255	-	DIP1684	-	hypothetical protein
1614	 57.59	0	1721486..1722388	-	300	38234256	-	DIP1685	-	putative cobalamin biosynthesis protein
1615	 55.25	0	1722618..1723055	-	145	38234257	-	DIP1686	-	hypothetical protein
1616	 57.24	0	1723276..1726011	+	911	38234258	aceE	DIP1687	-	pyruvate dehydrogenase subunit E1
1617	 50.53	0	1726207..1726770	+	187	38234259	-	DIP1688	-	hypothetical protein
1618	 51.94	0	1726799..1729045	-	748	38234260	-	DIP1689	-	hypothetical protein
1619	 50.34	0	1729135..1730457	+	440	38234261	-	DIP1690	-	hypothetical protein
1620	 51.86	0	1730402..1731367	-	321	38234262	-	DIP1691	-	putative alpha/beta hydrolase fold family protein
1621	 49.61	0	1731464..1731721	+	85	38234263	-	DIP1692	-	putative acyl carrier protein
1622	 51.85	0	1731758..1732567	+	269	38234264	-	DIP1693	-	putative N-acetylglucosamine related protein
1623	 56.10	0	1732564..1732932	-	122	38234265	-	DIP1694	-	hypothetical protein
1624	 54.01	0	1733031..1733852	-	273	38234266	-	DIP1695	-	hypothetical protein
1625	 54.35	0	1733849..1734676	-	275	38234267	-	DIP1696	-	hypothetical protein
1626	 54.32	0	1735145..1735387	+	80	38234268	-	DIP1697	-	hypothetical protein
1627	 56.09	0	1735479..1736036	+	185	38234269	-	DIP1698	-	putative thiamine biosynthesis related protein
1628	 53.29	0	1736085..1737983	-	632	38234270	dnaG	DIP1699	-	DNA primase
1629	 53.19	0	1737994..1739871	-	625	38234271	glmS	DIP1700	-	D-fructose-6-phosphate amidotransferase
1630	 53.16	0	1739962..1740420	+	152	38234272	-	DIP1701	-	putative ribonuclease
1631	 54.10	0	1740467..1740649	+	60	38234273	-	DIP1702	-	hypothetical protein
1632	 52.44	0	1740639..1741910	-	423	38234274	-	DIP1703	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1633	 55.01	0	1741917..1742594	-	225	38234275	-	DIP1704	-	hypothetical protein
1634	 56.20	0	1742648..1744654	+	668	38234276	-	DIP1705	-	hypothetical protein
1635	 58.90	+1	1744651..1745049	-	132	38234277	-	DIP1706	-	hypothetical protein
1636	 50.95	0	1745055..1745582	-	175	38234278	-	DIP1707	-	hypothetical protein
1637	 54.62	0	1745608..1746993	-	461	38234279	glyS	DIP1708	-	glycyl-tRNA synthetase
1638	 43.92	-2	1747304..1747681	+	125	38234280	-	DIP1709	-	ArsR family transcriptional regulator
1639	 51.52	0	1747858..1748286	+	142	38234281	-	DIP1710	-	putative ferric uptake regulatory protein
1640	 52.81	0	1748293..1749288	-	331	38234282	-	DIP1711	-	hypothetical protein
1641	 53.93	0	1749363..1750100	-	245	38234283	-	DIP1712	-	putative undecaprenyl phosphate synthetase
1642	 54.05	0	1750120..1750848	-	242	38234284	recO	DIP1713	-	DNA repair protein RecO
1643	 52.72	0	1750848..1751765	-	305	38234285	era	DIP1714	-	GTP-binding protein Era
1644	 54.70	0	1751817..1752677	-	286	38234286	-	DIP1715	-	pyridoxamine kinase
1645	 51.77	0	1752679..1754007	-	442	38234287	-	DIP1716	-	hypothetical protein
1646	 56.01	0	1754004..1754594	-	196	38234288	-	DIP1717	-	putative metalloprotease
1647	 50.36	0	1754595..1755563	-	322	38234289	-	DIP1718	-	putative PhoH-like protein
1648	 57.31	0	1755611..1756369	-	252	38234290	-	DIP1719	-	hypothetical protein
1649	 55.50	0	1756371..1757498	-	375	38234291	dnaJ2	DIP1720	-	chaperone protein 2
1650	 53.56	0	1757572..1758609	-	345	38234292	hrcA	DIP1721	-	heat-inducible transcription repressor
1651	 56.17	0	1758649..1759782	-	377	38234293	hemN	DIP1722	-	coproporphyrinogen III oxidase
1652	 54.76	0	1759772..1760443	-	223	38234294	-	DIP1723	-	hypothetical protein
1653	 47.92	-1	1760582..1763809	-	1075	38234295	-	DIP1724	-	putative surface-anchored membrane protein
1654	 53.99	0	1763886..1765715	-	609	38234296	-	DIP1725	-	putative long-chain-fatty-acid-CoA ligase
1655	 55.97	0	1765812..1767980	+	722	38234297	-	DIP1726	-	putative glucanotransferase
1656	 56.86	0	1768127..1768330	-	67	38234298	-	DIP1727	-	hypothetical protein
1657	 53.18	0	1768327..1770306	-	659	38234299	-	DIP1728	-	putative peptidase
1658	 55.75	0	1770335..1771534	+	399	38234300	-	DIP1729	-	putative drug resistance protein (hydrolase)
1659	 50.18	0	1771521..1772072	-	183	38234301	idi	DIP1730	-	isopentenyl-diphosphate delta-isomerase
1660	 50.48	0	1772091..1773665	-	524	38234302	-	DIP1731	-	hypothetical protein
1661	 45.08	-1	1773666..1774244	-	192	38234303	-	DIP1732	-	hypothetical protein
1662	 43.26	-2	1774501..1775658	-	385	38234304	-	DIP1733	-	hypothetical protein
1663	 47.20	-1	1775840..1776250	-	136	38234305	-	DIP1734	-	hypothetical protein
1664	 48.54	-1	1776468..1778315	+	615	38234306	-	DIP1735	-	ABC transporter ATP-binding protein
1665	 50.75	0	1778334..1779464	+	376	38234307	aecD	DIP1736	-	beta C-S lyase
1666	 55.48	0	1779545..1780849	+	434	38234308	brnQ	DIP1737	-	branched-chain amino acid ABC transport system membrane protein
1667	 56.71	0	1780859..1781812	+	317	38234309	-	DIP1738	-	hypothetical protein
1668	 53.42	0	1781790..1783616	-	608	38234310	ectP	DIP1739	-	ectoine, glycine betaine and proline transport system membrane protein
1669	 52.19	0	1783772..1785298	+	508	38234311	-	DIP1740	-	ABC transporter solute-binding protein
1670	 53.38	0	1785305..1786252	+	315	38234312	-	DIP1741	-	putative oligopeptide ABC transport system membrane protein
1671	 58.52	+1	1786256..1787077	+	273	38234313	-	DIP1742	-	putative oligopeptide ABC transport system membrane protein
1672	 55.23	0	1787074..1788516	+	480	38234314	-	DIP1743	-	ABC transporter ATP-binding protein
1673	 53.17	0	1788659..1789873	-	404	38234315	-	DIP1744	-	putative prolyl aminopeptidase
1674	 53.75	0	1789874..1790539	+	221	38234316	-	DIP1745	-	hypothetical protein
1675	 54.64	0	1790536..1791924	+	462	38234317	-	DIP1746	-	putative xylulose kinase
1676	 58.87	+1	1791955..1792185	+	76	38234318	-	DIP1747	-	hypothetical protein
1677	 58.36	0	1792489..1794102	+	537	38234319	-	DIP1748	-	putative oxidase
1678	 54.65	0	1794114..1794371	+	85	38234320	-	DIP1749	-	hypothetical protein
1679	 53.29	0	1794357..1795889	-	510	38234321	-	DIP1750	-	putative potassium transport related membrane protein
1680	 47.95	-1	1795929..1796147	+	72	38234322	-	DIP1751	-	hypothetical protein
1681	 56.55	0	1796249..1797652	+	467	38234323	-	DIP1752	-	antibiotic ABC transporter
1682	 56.98	0	1797649..1798587	+	312	38234324	iunH	DIP1753	-	inosine-uridine preferring nucleoside hydrolase
1683	 58.86	+1	1798593..1799399	+	268	38234325	-	DIP1754	-	hypothetical protein
1684	 55.91	0	1799436..1800095	+	219	38234326	-	DIP1755	-	hypothetical protein
1685	 50.81	0	1800239..1803019	+	926	38234327	-	DIP1756	-	putative DNA methyltransferase
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.