IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1544	 52.74	0	1642793..1643776	-	327	38234186	-	DIP1611	-	putative methylenetetrahydrofolate reductase
1545	 52.27	0	1643980..1645104	+	374	38234187	-	DIP1612	-	putative geranylgeranyl pyrophosphate synthase
1546	 50.00	0	1645126..1646613	+	495	38234188	-	DIP1613	-	hypothetical protein
1547	 50.41	0	1646614..1646982	-	122	38234189	-	DIP1614	-	hypothetical protein
1548	 54.35	0	1647084..1649276	+	730	38234190	-	DIP1615	-	putative serine/threonine protein kinase
1549	 51.98	0	1649344..1650732	-	462	38234191	aroH	DIP1616	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1550	 49.41	0	1650846..1651355	-	169	38234192	-	DIP1617	-	hypothetical protein
1551	 49.04	-1	1651422..1652147	-	241	38234193	-	DIP1618	-	putative acyltransferase
1552	 54.19	0	1652199..1653152	-	317	38234194	glk	DIP1619	-	glucose kinase
1553	 50.97	0	1653283..1654416	-	377	38234195	-	DIP1620	-	hypothetical protein
1554	 51.97	0	1654437..1655450	-	337	38234196	-	DIP1621	-	hypothetical protein
1555	 52.29	0	1655620..1656384	-	254	38234197	-	DIP1622	-	hypothetical protein
1556	 42.39	-2	1656493..1656735	-	80	38234198	-	DIP1623	-	hypothetical protein
1557	 50.83	0	1657014..1658636	-	540	38234199	qcrB	DIP1624	-	ubiquinol-cytochrome C reductase cytochrome B subunit
1558	 51.92	0	1658633..1659853	-	406	38234200	qcrA	DIP1625	-	ubiquinol-cytochrome C reductase iron-sulfur protein
1559	 53.55	0	1659850..1660695	-	281	38234201	qcrC	DIP1626	-	ubiquinol-cytochrome C reductase cytochrome C subunit
1560	 50.65	0	1660829..1661446	-	205	38234202	ctaE	DIP1627	-	cytochrome C oxidase subunit III
1561	 49.07	-1	1661984..1662415	-	143	38234203	-	DIP1628	-	hypothetical protein
1562	 51.61	0	1662439..1663527	-	362	38234204	-	DIP1629	-	putative cytochrome C oxidase precursor
1563	 50.44	0	1663954..1665876	+	640	38234205	asnB	DIP1630	-	putative asparagine synthetase
1564	 51.59	0	1665967..1666311	-	114	38234206	-	DIP1631	-	hypothetical protein
1565	 51.11	0	1666530..1667204	+	224	38234207	-	DIP1632	-	hypothetical protein
1566	 52.09	0	1667205..1667753	+	182	38234208	cobU	DIP1633	-	putative cobinamide kinase
1567	 51.17	0	1667803..1668873	+	356	38234209	cobT	DIP1634	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1568	 51.15	0	1668881..1669705	+	274	38234210	cobS	DIP1635	-	cobalamin synthase
1569	 53.23	0	1669782..1670897	-	371	38234211	ilvE	DIP1636	-	branched-chain amino acid aminotransferase
1570	 54.89	0	1670998..1672500	+	500	38234212	-	DIP1637	-	leucyl aminopeptidase
1571	 48.68	-1	1672564..1672980	-	138	38234213	-	DIP1638	-	putative oxidoreductase
1572	 55.90	0	1673085..1675034	+	649	38234214	aceF	DIP1639	-	dihydrolipoamide acetyltransferase
1573	 54.85	0	1675151..1675903	+	250	38234215	lipB	DIP1640	-	lipoyltransferase
1574	 53.44	0	1675956..1677044	+	362	38234216	lipA	DIP1641	-	lipoyl synthase
1575	 55.43	0	1677107..1677880	+	257	38234217	-	DIP1642	-	hypothetical protein
1576	 56.02	0	1677927..1678433	-	168	38234218	-	DIP1643	-	hypothetical protein
1577	 55.53	0	1678597..1680033	+	478	38234219	glnA1	DIP1644	-	glutamine synthetase I
1578	 54.02	0	1680222..1680482	+	86	38234220	-	DIP1645	-	hypothetical protein
1579	 50.42	0	1680647..1681126	+	159	38234221	-	DIP1646	-	hypothetical protein
1580	 46.56	-1	1681123..1681500	+	125	38234222	-	DIP1647	-	hypothetical protein
1581	 51.23	0	1683094..1683417	-	107	38234223	-	DIP1650	-	hypothetical protein
1582	 46.69	-1	1683728..1684663	-	311	38234224	-	DIP1651	-	hypothetical protein
1583	 51.45	0	1684673..1688437	-	1254	38234225	-	DIP1652	-	hypothetical protein
1584	 49.78	0	1688451..1689344	-	297	38234226	-	DIP1653	-	hypothetical protein
1585	 51.57	0	1689384..1690178	-	264	38234227	-	DIP1654	-	hypothetical protein
1586	 52.04	0	1690224..1690688	-	154	38234228	-	DIP1655	-	hypothetical protein
1587	 48.37	-1	1691457..1693697	+	746	38234229	-	DIP1656	-	hypothetical protein
1588	 45.13	-1	1693807..1694001	+	64	38234230	-	DIP1657	-	hypothetical protein
1589	 49.77	0	1694157..1695038	-	293	38234231	-	DIP1658	-	putative membrane-anchored protein
1590	 52.58	0	1695397..1696269	-	290	38234232	-	DIP1659	-	hypothetical protein
1591	 48.57	-1	1696679..1696888	-	69	38234233	-	DIP1660	-	hypothetical protein
1592	 49.67	0	1697001..1698353	-	450	38234234	-	DIP1661	-	hypothetical protein
1593	 52.19	0	1698485..1699168	+	227	38234235	-	DIP1662	-	GntR family transcriptional regulator
1594	 55.56	0	1699190..1700449	+	419	38234236	-	DIP1663	-	MFS family transporter
1595	 54.00	0	1700446..1700982	-	178	38234237	-	DIP1664	-	hypothetical protein
1596	 47.62	-1	1701013..1701159	-	48	38234238	-	DIP1665	-	hypothetical protein
1597	 49.21	0	1701262..1702710	-	482	38234239	thrC	DIP1666	-	threonine synthase
1598	 53.90	0	1702727..1703674	+	315	38234240	-	DIP1667	-	hypothetical protein
1599	 53.33	0	1703671..1703940	-	89	38234241	-	DIP1668	-	hypothetical protein
1600	 54.32	0	1704009..1704656	-	215	38234242	hmuO	DIP1669	-	heme oxygenase
1601	 53.84	0	1704796..1707960	-	1054	38234243	glnE	DIP1670	-	adenylyltransferase
1602	 53.69	0	1708011..1709351	-	446	38234244	glnA2	DIP1671	-	glutamine synthetase II
1603	 50.48	0	1709494..1711068	+	524	38234245	-	DIP1672	-	hypothetical protein
1604	 48.44	-1	1711078..1711269	-	63	38234246	-	DIP1673	-	hypothetical protein
1605	 54.17	0	1711326..1712669	+	447	38234247	-	DIP1674	-	hypothetical protein
1606	 48.73	-1	1714046..1714753	-	235	38234248	-	DIP1677	-	hypothetical protein
1607	 52.91	0	1715369..1716502	-	377	38234249	-	DIP1678	-	bifunctional RNase H/acid phosphatase
1608	 54.39	0	1716502..1717218	-	238	38234250	-	DIP1679	-	hypothetical protein
1609	 53.03	0	1717298..1718434	-	378	38234251	-	DIP1680	-	hypothetical protein
1610	 52.95	0	1718437..1719471	-	344	38234252	-	DIP1681	-	hypothetical protein
1611	 51.78	0	1719502..1720146	+	214	38234253	-	DIP1682	-	putative phosphoglycolate phosphatase
1612	 53.90	0	1720169..1720630	+	153	38234254	-	DIP1683	-	low molecular weight protein-tyrosine-phosphatase
1613	 52.52	0	1720659..1721492	+	277	38234255	-	DIP1684	-	hypothetical protein
1614	 57.59	0	1721486..1722388	-	300	38234256	-	DIP1685	-	putative cobalamin biosynthesis protein
1615	 55.25	0	1722618..1723055	-	145	38234257	-	DIP1686	-	hypothetical protein
1616	 57.24	0	1723276..1726011	+	911	38234258	aceE	DIP1687	-	pyruvate dehydrogenase subunit E1
1617	 50.53	0	1726207..1726770	+	187	38234259	-	DIP1688	-	hypothetical protein
1618	 51.94	0	1726799..1729045	-	748	38234260	-	DIP1689	-	hypothetical protein
1619	 50.34	0	1729135..1730457	+	440	38234261	-	DIP1690	-	hypothetical protein
1620	 51.86	0	1730402..1731367	-	321	38234262	-	DIP1691	-	putative alpha/beta hydrolase fold family protein
1621	 49.61	0	1731464..1731721	+	85	38234263	-	DIP1692	-	putative acyl carrier protein
1622	 51.85	0	1731758..1732567	+	269	38234264	-	DIP1693	-	putative N-acetylglucosamine related protein
1623	 56.10	0	1732564..1732932	-	122	38234265	-	DIP1694	-	hypothetical protein
1624	 54.01	0	1733031..1733852	-	273	38234266	-	DIP1695	-	hypothetical protein
1625	 54.35	0	1733849..1734676	-	275	38234267	-	DIP1696	-	hypothetical protein
1626	 54.32	0	1735145..1735387	+	80	38234268	-	DIP1697	-	hypothetical protein
1627	 56.09	0	1735479..1736036	+	185	38234269	-	DIP1698	-	putative thiamine biosynthesis related protein
1628	 53.29	0	1736085..1737983	-	632	38234270	dnaG	DIP1699	-	DNA primase
1629	 53.19	0	1737994..1739871	-	625	38234271	glmS	DIP1700	-	D-fructose-6-phosphate amidotransferase
1630	 53.16	0	1739962..1740420	+	152	38234272	-	DIP1701	-	putative ribonuclease
1631	 54.10	0	1740467..1740649	+	60	38234273	-	DIP1702	-	hypothetical protein
1632	 52.44	0	1740639..1741910	-	423	38234274	-	DIP1703	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1633	 55.01	0	1741917..1742594	-	225	38234275	-	DIP1704	-	hypothetical protein
1634	 56.20	0	1742648..1744654	+	668	38234276	-	DIP1705	-	hypothetical protein
1635	 58.90	+1	1744651..1745049	-	132	38234277	-	DIP1706	-	hypothetical protein
1636	 50.95	0	1745055..1745582	-	175	38234278	-	DIP1707	-	hypothetical protein
1637	 54.62	0	1745608..1746993	-	461	38234279	glyS	DIP1708	-	glycyl-tRNA synthetase
1638	 43.92	-2	1747304..1747681	+	125	38234280	-	DIP1709	-	ArsR family transcriptional regulator
1639	 51.52	0	1747858..1748286	+	142	38234281	-	DIP1710	-	putative ferric uptake regulatory protein
1640	 52.81	0	1748293..1749288	-	331	38234282	-	DIP1711	-	hypothetical protein
1641	 53.93	0	1749363..1750100	-	245	38234283	-	DIP1712	-	putative undecaprenyl phosphate synthetase
1642	 54.05	0	1750120..1750848	-	242	38234284	recO	DIP1713	-	DNA repair protein RecO
1643	 52.72	0	1750848..1751765	-	305	38234285	era	DIP1714	-	GTP-binding protein Era
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.