IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1471	 52.49	0	1559123..1560610	-	495	38234113	-	DIP1538	-	putative cell division protein
1472	 52.15	0	1560748..1564308	-	1186	38234114	-	DIP1539	-	hypothetical protein
1473	 51.38	0	1564413..1567898	-	1161	38234115	-	DIP1540	-	putative chromosome partition protein
1474	 57.64	0	1567923..1568210	-	95	38234116	-	DIP1541	-	putative acylphosphatase
1475	 48.79	-1	1568210..1569697	-	495	38234117	-	DIP1542	-	putative amino acid carrier protein
1476	 48.60	-1	1569776..1570666	-	296	38234118	-	DIP1543	-	formamidopyrimidine-DNA glycosylase
1477	 50.53	0	1570684..1571433	-	249	38234119	rnc	DIP1544	-	ribonuclease III
1478	 51.79	0	1571430..1571960	-	176	38234120	-	DIP1545	-	hypothetical protein
1479	 52.80	0	1572001..1572714	-	237	38234121	-	DIP1546	-	hypothetical protein
1480	 52.34	0	1572978..1574324	-	448	38234122	gdh	DIP1547	-	glutamate dehydrogenase
1481	 52.10	0	1574742..1575908	+	388	38234123	-	DIP1548	-	putative glycerate kinase
1482	 52.21	0	1575878..1576306	-	142	38234124	-	DIP1549	-	hypothetical protein
1483	 49.96	0	1576350..1577666	+	438	38234125	-	DIP1550	-	hypothetical protein
1484	 52.11	0	1577710..1579014	+	434	38234126	-	DIP1551	-	putative peptidase
1485	 53.99	0	1579137..1581566	+	809	38234127	-	DIP1552	-	putative glycogen phosphorylase
1486	 51.83	0	1581632..1583053	-	473	38234128	pyk	DIP1553	-	pyruvate kinase
1487	 49.06	-1	1583263..1584114	-	283	38234129	-	DIP1554	-	prolipoprotein diacylglyceryl transferase
1488	 56.33	0	1584186..1584998	-	270	38234130	trpC2	DIP1555	-	indole-3-glycerol phosphate synthase
1489	 54.34	0	1585111..1585686	-	191	38234131	-	DIP1556	-	hypothetical protein
1490	 50.43	0	1585787..1586137	-	116	38234132	hisI	DIP1557	-	phosphoribosyl-AMP cyclohydrolase
1491	 52.12	0	1586159..1586935	-	258	38234133	hisF	DIP1558	-	imidazole glycerol phosphate synthase subunit HisF
1492	 50.13	0	1587026..1587811	-	261	38234134	impA	DIP1559	-	inositol monophosphate phosphatase
1493	 52.26	0	1587808..1588536	-	242	38234135	hisA	DIP1560	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1494	 52.45	0	1588634..1589266	-	210	38234136	hisH	DIP1561	-	imidazole glycerol phosphate synthase subunit HisH
1495	 51.59	0	1589333..1590745	-	470	38234137	-	DIP1562	-	putative transport membrane protein
1496	 48.61	-1	1590914..1591129	-	71	38234138	-	DIP1563	-	hypothetical protein
1497	 48.28	-1	1591132..1591740	-	202	38234139	hisB	DIP1564	-	imidazoleglycerol-phosphate dehydratase
1498	 48.68	-1	1591822..1592922	-	366	38234140	hisC	DIP1565	-	histidinol-phosphate aminotransferase
1499	 51.93	0	1592961..1594310	-	449	38234141	hisD	DIP1566	-	histidinol dehydrogenase
1500	 48.11	-1	1594635..1595690	+	351	38234142	-	DIP1567	-	hypothetical protein
1501	 52.19	0	1595728..1595955	+	75	38234143	-	DIP1568	-	hypothetical protein
1502	 49.22	0	1595969..1596226	+	85	38234144	-	DIP1569	-	hypothetical protein
1503	 55.66	0	1596430..1597092	-	220	38234145	-	DIP1570	-	hypothetical protein
1504	 48.17	-1	1597317..1597862	+	181	38234146	-	DIP1571	-	TetR family transcriptional regulator
1505	 52.63	0	1597883..1600090	+	735	38234147	glgX	DIP1572	-	glycogen operon protein
1506	 51.97	0	1600226..1601572	+	448	38234148	-	DIP1573	-	putative DNA polymerase III epsilon subunit
1507	 49.68	0	1601707..1602324	+	205	38234149	-	DIP1574	-	hypothetical protein
1508	 50.20	0	1602408..1603427	+	339	38234150	-	DIP1575	-	hypothetical protein
1509	 56.08	0	1603691..1604068	-	125	38234151	-	DIP1576	-	putative RNA-binding heat shock protein
1510	 47.62	-1	1604074..1604304	-	76	38234152	-	DIP1577	-	hypothetical protein
1511	 51.71	0	1604330..1604971	-	213	38234153	-	DIP1578	-	hypothetical protein
1512	 52.05	0	1604995..1606335	-	446	38234154	ilvA	DIP1579	-	threonine dehydratase
1513	 50.60	0	1606336..1609896	-	1186	38234155	dnaE	DIP1580	-	DNA polymerase III subunit alpha
1514	 50.89	0	1610019..1610918	+	299	38234156	-	DIP1581	-	hypothetical protein
1515	 55.86	0	1610892..1611437	-	181	38234157	-	DIP1582	-	hypothetical protein
1516	 54.26	0	1611445..1612371	-	308	38234158	rluC	DIP1583	-	putative pseudouridine synthase
1517	 48.76	-1	1612368..1612892	-	174	38234159	-	DIP1584	-	putative lipoprotein signal peptidase
1518	 52.90	0	1612953..1613918	+	321	38234160	-	DIP1585	-	hypothetical protein
1519	 54.59	0	1614007..1614627	-	206	38234161	-	DIP1586	-	hypothetical protein
1520	 54.18	0	1614825..1615745	+	306	38234162	-	DIP1587	-	putative L-asparaginase
1521	 53.24	0	1615746..1617101	-	451	38234163	dinB	DIP1588	-	DNA polymerase IV
1522	 51.22	0	1617227..1620385	-	1052	38234164	ileS	DIP1589	-	isoleucyl-tRNA synthetase
1523	 55.79	0	1620783..1621784	-	333	38234165	ag84	DIP1590	-	antigen 84
1524	 43.40	-2	1622125..1622412	-	95	38234166	-	DIP1591	-	hypothetical protein
1525	 48.26	-1	1622397..1622597	-	66	38234167	-	DIP1592	-	hypothetical protein
1526	 53.78	0	1622609..1623058	-	149	38234168	-	DIP1593	-	hypothetical protein
1527	 52.23	0	1623168..1623908	-	246	38234169	-	DIP1594	-	hypothetical protein
1528	 52.99	0	1623908..1625143	-	411	38234170	ftsZ	DIP1595	-	cell division protein FtsZ
1529	 47.95	-1	1625535..1626191	-	218	38234171	-	DIP1596	-	putative cell division protein precursor
1530	 51.53	0	1626188..1627621	-	477	38234172	murC	DIP1597	-	UDP-N-acetylmuramate--L-alanine ligase
1531	 50.37	0	1627639..1628718	-	359	38234173	murG	DIP1598	-	N-acetylglucosaminyl transferase
1532	 50.10	0	1628720..1630228	-	502	38234174	-	DIP1599	-	putative cell division protein
1533	 52.95	0	1630255..1631697	-	480	38234175	murD	DIP1600	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1534	 50.58	0	1631702..1632820	-	372	38234176	mraY	DIP1601	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1535	 52.31	0	1632828..1634318	-	496	38234177	murF	DIP1602	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase
1536	 52.20	0	1634372..1635913	-	513	38234178	murE	DIP1603	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1537	 48.40	-1	1636021..1638045	-	674	38234179	ftsI	DIP1604	-	putative penicillin-binding (cell division related) protein
1538	 53.62	0	1638076..1638849	-	257	38234180	-	DIP1605	-	hypothetical protein
1539	 49.80	0	1638906..1639925	-	339	38234181	mraW	DIP1606	-	S-adenosyl-methyltransferase MraW
1540	 51.16	0	1640108..1640539	-	143	38234182	-	DIP1607	-	cell division protein MraZ
1541	 51.60	0	1641087..1641491	-	134	38234183	-	DIP1608	-	hypothetical protein
1542	 48.29	-1	1641600..1642154	-	184	38234184	-	DIP1609	-	hypothetical protein
1543	 49.74	0	1642218..1642796	+	192	38234185	-	DIP1610	-	hypothetical protein
1544	 52.74	0	1642793..1643776	-	327	38234186	-	DIP1611	-	putative methylenetetrahydrofolate reductase
1545	 52.27	0	1643980..1645104	+	374	38234187	-	DIP1612	-	putative geranylgeranyl pyrophosphate synthase
1546	 50.00	0	1645126..1646613	+	495	38234188	-	DIP1613	-	hypothetical protein
1547	 50.41	0	1646614..1646982	-	122	38234189	-	DIP1614	-	hypothetical protein
1548	 54.35	0	1647084..1649276	+	730	38234190	-	DIP1615	-	putative serine/threonine protein kinase
1549	 51.98	0	1649344..1650732	-	462	38234191	aroH	DIP1616	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1550	 49.41	0	1650846..1651355	-	169	38234192	-	DIP1617	-	hypothetical protein
1551	 49.04	-1	1651422..1652147	-	241	38234193	-	DIP1618	-	putative acyltransferase
1552	 54.19	0	1652199..1653152	-	317	38234194	glk	DIP1619	-	glucose kinase
1553	 50.97	0	1653283..1654416	-	377	38234195	-	DIP1620	-	hypothetical protein
1554	 51.97	0	1654437..1655450	-	337	38234196	-	DIP1621	-	hypothetical protein
1555	 52.29	0	1655620..1656384	-	254	38234197	-	DIP1622	-	hypothetical protein
1556	 42.39	-2	1656493..1656735	-	80	38234198	-	DIP1623	-	hypothetical protein
1557	 50.83	0	1657014..1658636	-	540	38234199	qcrB	DIP1624	-	ubiquinol-cytochrome C reductase cytochrome B subunit
1558	 51.92	0	1658633..1659853	-	406	38234200	qcrA	DIP1625	-	ubiquinol-cytochrome C reductase iron-sulfur protein
1559	 53.55	0	1659850..1660695	-	281	38234201	qcrC	DIP1626	-	ubiquinol-cytochrome C reductase cytochrome C subunit
1560	 50.65	0	1660829..1661446	-	205	38234202	ctaE	DIP1627	-	cytochrome C oxidase subunit III
1561	 49.07	-1	1661984..1662415	-	143	38234203	-	DIP1628	-	hypothetical protein
1562	 51.61	0	1662439..1663527	-	362	38234204	-	DIP1629	-	putative cytochrome C oxidase precursor
1563	 50.44	0	1663954..1665876	+	640	38234205	asnB	DIP1630	-	putative asparagine synthetase
1564	 51.59	0	1665967..1666311	-	114	38234206	-	DIP1631	-	hypothetical protein
1565	 51.11	0	1666530..1667204	+	224	38234207	-	DIP1632	-	hypothetical protein
1566	 52.09	0	1667205..1667753	+	182	38234208	cobU	DIP1633	-	putative cobinamide kinase
1567	 51.17	0	1667803..1668873	+	356	38234209	cobT	DIP1634	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1568	 51.15	0	1668881..1669705	+	274	38234210	cobS	DIP1635	-	cobalamin synthase
1569	 53.23	0	1669782..1670897	-	371	38234211	ilvE	DIP1636	-	branched-chain amino acid aminotransferase
1570	 54.89	0	1670998..1672500	+	500	38234212	-	DIP1637	-	leucyl aminopeptidase
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.