IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1432	 50.97	0	1517640..1519079	-	479	38234074	cobQ	DIP1495	-	cobyric acid synthase
1433	 47.91	-1	1519142..1520026	-	294	38234075	mapB	DIP1496	-	methionine aminopeptidase
1434	 51.10	0	1520073..1521929	-	618	38234076	-	DIP1497	-	putative secreted penicillin-binding protein
1435	 50.60	0	1522046..1523221	-	391	38234077	ispG	DIP1498	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1436	 51.44	0	1523327..1524541	-	404	38234078	-	DIP1499	-	hypothetical protein
1437	 52.32	0	1524586..1525749	-	387	38234079	dxr	DIP1500	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1438	 52.99	0	1525987..1526505	+	172	38234080	-	DIP1501	-	hypothetical protein
1439	 50.95	0	1526585..1527691	-	368	38234081	-	DIP1502	-	hypothetical protein
1440	 45.57	-1	1527861..1528244	+	127	38234082	-	DIP1503	-	hypothetical protein
1441	 48.81	-1	1528307..1529185	-	292	38234083	-	DIP1504	-	putative phospholipid biosynthesis
1442	 47.49	-1	1529309..1529866	-	185	38234084	frr	DIP1505	-	ribosome recycling factor
1443	 49.51	0	1529938..1530747	-	269	38234085	pyrH	DIP1506	-	uridylate kinase
1444	 55.19	0	1530890..1531717	-	275	38234086	tsf	DIP1507	-	elongation factor Ts
1445	 54.06	0	1531998..1532798	-	266	38234087	rpsB	DIP1508	-	30S ribosomal protein S2
1446	 49.44	0	1533166..1533699	+	177	38234088	-	DIP1509	-	hypothetical protein
1447	 48.40	-1	1533714..1534622	-	302	38234089	xerC	DIP1510	-	site-specific tyrosine recombinase XerC
1448	 49.91	0	1534889..1536040	-	383	38234090	-	DIP1511	-	hypothetical protein
1449	 51.00	0	1536037..1537587	-	516	38234091	-	DIP1512	-	hypothetical protein
1450	 47.16	-1	1537574..1538101	-	175	38234092	-	DIP1513	-	hypothetical protein
1451	 48.04	-1	1538173..1538478	-	101	38234093	-	DIP1514	-	hypothetical protein
1452	 49.86	0	1538491..1539180	-	229	38234094	rnhB	DIP1515	-	ribonuclease HII
1453	 48.37	-1	1539177..1540034	-	285	38234095	-	DIP1516	-	putative signal peptidase
1454	 52.15	0	1540598..1541410	-	270	38234096	-	DIP1517	-	putative transposase
1455	 54.04	0	1541458..1541940	-	160	38234097	-	DIP1518	-	putative insertion element DNA-binding protein
1456	 48.80	-1	1542092..1543009	-	305	38234098	-	DIP1519	-	hypothetical protein
1457	 45.84	-1	1543197..1545506	-	769	38234099	-	DIP1520	-	hypothetical protein
1458	 43.86	-2	1545659..1545772	-	37	38234100	-	DIP1521	-	hypothetical protein
1459	 49.37	0	1545949..1546185	-	78	38234101	-	DIP1522	-	hypothetical protein
1460	 54.04	0	1547110..1547592	+	160	38234102	-	DIP1525	-	putative insertion element DNA-binding protein
1461	 52.15	0	1547640..1548452	+	270	38234103	-	DIP1526	-	putative transposase
1462	 53.22	0	1548534..1548875	-	113	38234104	rplS	DIP1527	-	50S ribosomal protein L19
1463	 51.12	0	1549049..1551325	-	758	38234105	-	DIP1528	-	putative transcriptional accessory protein
1464	 48.51	-1	1551351..1551719	-	122	38234106	-	DIP1529	-	hypothetical protein
1465	 50.74	0	1551703..1552581	-	292	38234107	trmD	DIP1530	-	tRNA (guanine-N(1)-)-methyltransferase
1466	 47.50	-1	1552581..1553081	-	166	38234108	rimM	DIP1531	-	16S rRNA-processing protein
1467	 54.43	0	1553211..1553684	-	157	38234109	rpsP	DIP1532	-	30S ribosomal protein S16
1468	 50.77	0	1553918..1555534	-	538	38234110	ffh	DIP1533	-	signal recognition particle protein
1469	 51.16	0	1555644..1557803	-	719	38234111	glnD	DIP1534	-	PII uridylyl-transferase
1470	 48.97	-1	1557809..1558147	-	112	38234112	glnB	DIP1535	-	nitrogen regulatory protein
1471	 52.49	0	1559123..1560610	-	495	38234113	-	DIP1538	-	putative cell division protein
1472	 52.15	0	1560748..1564308	-	1186	38234114	-	DIP1539	-	hypothetical protein
1473	 51.38	0	1564413..1567898	-	1161	38234115	-	DIP1540	-	putative chromosome partition protein
1474	 57.64	0	1567923..1568210	-	95	38234116	-	DIP1541	-	putative acylphosphatase
1475	 48.79	-1	1568210..1569697	-	495	38234117	-	DIP1542	-	putative amino acid carrier protein
1476	 48.60	-1	1569776..1570666	-	296	38234118	-	DIP1543	-	formamidopyrimidine-DNA glycosylase
1477	 50.53	0	1570684..1571433	-	249	38234119	rnc	DIP1544	-	ribonuclease III
1478	 51.79	0	1571430..1571960	-	176	38234120	-	DIP1545	-	hypothetical protein
1479	 52.80	0	1572001..1572714	-	237	38234121	-	DIP1546	-	hypothetical protein
1480	 52.34	0	1572978..1574324	-	448	38234122	gdh	DIP1547	-	glutamate dehydrogenase
1481	 52.10	0	1574742..1575908	+	388	38234123	-	DIP1548	-	putative glycerate kinase
1482	 52.21	0	1575878..1576306	-	142	38234124	-	DIP1549	-	hypothetical protein
1483	 49.96	0	1576350..1577666	+	438	38234125	-	DIP1550	-	hypothetical protein
1484	 52.11	0	1577710..1579014	+	434	38234126	-	DIP1551	-	putative peptidase
1485	 53.99	0	1579137..1581566	+	809	38234127	-	DIP1552	-	putative glycogen phosphorylase
1486	 51.83	0	1581632..1583053	-	473	38234128	pyk	DIP1553	-	pyruvate kinase
1487	 49.06	-1	1583263..1584114	-	283	38234129	-	DIP1554	-	prolipoprotein diacylglyceryl transferase
1488	 56.33	0	1584186..1584998	-	270	38234130	trpC2	DIP1555	-	indole-3-glycerol phosphate synthase
1489	 54.34	0	1585111..1585686	-	191	38234131	-	DIP1556	-	hypothetical protein
1490	 50.43	0	1585787..1586137	-	116	38234132	hisI	DIP1557	-	phosphoribosyl-AMP cyclohydrolase
1491	 52.12	0	1586159..1586935	-	258	38234133	hisF	DIP1558	-	imidazole glycerol phosphate synthase subunit HisF
1492	 50.13	0	1587026..1587811	-	261	38234134	impA	DIP1559	-	inositol monophosphate phosphatase
1493	 52.26	0	1587808..1588536	-	242	38234135	hisA	DIP1560	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1494	 52.45	0	1588634..1589266	-	210	38234136	hisH	DIP1561	-	imidazole glycerol phosphate synthase subunit HisH
1495	 51.59	0	1589333..1590745	-	470	38234137	-	DIP1562	-	putative transport membrane protein
1496	 48.61	-1	1590914..1591129	-	71	38234138	-	DIP1563	-	hypothetical protein
1497	 48.28	-1	1591132..1591740	-	202	38234139	hisB	DIP1564	-	imidazoleglycerol-phosphate dehydratase
1498	 48.68	-1	1591822..1592922	-	366	38234140	hisC	DIP1565	-	histidinol-phosphate aminotransferase
1499	 51.93	0	1592961..1594310	-	449	38234141	hisD	DIP1566	-	histidinol dehydrogenase
1500	 48.11	-1	1594635..1595690	+	351	38234142	-	DIP1567	-	hypothetical protein
1501	 52.19	0	1595728..1595955	+	75	38234143	-	DIP1568	-	hypothetical protein
1502	 49.22	0	1595969..1596226	+	85	38234144	-	DIP1569	-	hypothetical protein
1503	 55.66	0	1596430..1597092	-	220	38234145	-	DIP1570	-	hypothetical protein
1504	 48.17	-1	1597317..1597862	+	181	38234146	-	DIP1571	-	TetR family transcriptional regulator
1505	 52.63	0	1597883..1600090	+	735	38234147	glgX	DIP1572	-	glycogen operon protein
1506	 51.97	0	1600226..1601572	+	448	38234148	-	DIP1573	-	putative DNA polymerase III epsilon subunit
1507	 49.68	0	1601707..1602324	+	205	38234149	-	DIP1574	-	hypothetical protein
1508	 50.20	0	1602408..1603427	+	339	38234150	-	DIP1575	-	hypothetical protein
1509	 56.08	0	1603691..1604068	-	125	38234151	-	DIP1576	-	putative RNA-binding heat shock protein
1510	 47.62	-1	1604074..1604304	-	76	38234152	-	DIP1577	-	hypothetical protein
1511	 51.71	0	1604330..1604971	-	213	38234153	-	DIP1578	-	hypothetical protein
1512	 52.05	0	1604995..1606335	-	446	38234154	ilvA	DIP1579	-	threonine dehydratase
1513	 50.60	0	1606336..1609896	-	1186	38234155	dnaE	DIP1580	-	DNA polymerase III subunit alpha
1514	 50.89	0	1610019..1610918	+	299	38234156	-	DIP1581	-	hypothetical protein
1515	 55.86	0	1610892..1611437	-	181	38234157	-	DIP1582	-	hypothetical protein
1516	 54.26	0	1611445..1612371	-	308	38234158	rluC	DIP1583	-	putative pseudouridine synthase
1517	 48.76	-1	1612368..1612892	-	174	38234159	-	DIP1584	-	putative lipoprotein signal peptidase
1518	 52.90	0	1612953..1613918	+	321	38234160	-	DIP1585	-	hypothetical protein
1519	 54.59	0	1614007..1614627	-	206	38234161	-	DIP1586	-	hypothetical protein
1520	 54.18	0	1614825..1615745	+	306	38234162	-	DIP1587	-	putative L-asparaginase
1521	 53.24	0	1615746..1617101	-	451	38234163	dinB	DIP1588	-	DNA polymerase IV
1522	 51.22	0	1617227..1620385	-	1052	38234164	ileS	DIP1589	-	isoleucyl-tRNA synthetase
1523	 55.79	0	1620783..1621784	-	333	38234165	ag84	DIP1590	-	antigen 84
1524	 43.40	-2	1622125..1622412	-	95	38234166	-	DIP1591	-	hypothetical protein
1525	 48.26	-1	1622397..1622597	-	66	38234167	-	DIP1592	-	hypothetical protein
1526	 53.78	0	1622609..1623058	-	149	38234168	-	DIP1593	-	hypothetical protein
1527	 52.23	0	1623168..1623908	-	246	38234169	-	DIP1594	-	hypothetical protein
1528	 52.99	0	1623908..1625143	-	411	38234170	ftsZ	DIP1595	-	cell division protein FtsZ
1529	 47.95	-1	1625535..1626191	-	218	38234171	-	DIP1596	-	putative cell division protein precursor
1530	 51.53	0	1626188..1627621	-	477	38234172	murC	DIP1597	-	UDP-N-acetylmuramate--L-alanine ligase
1531	 50.37	0	1627639..1628718	-	359	38234173	murG	DIP1598	-	N-acetylglucosaminyl transferase
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.