IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1347	 50.66	0	1421865..1422626	+	253	38233989	ppgK	DIP1404	-	polyphosphate glucokinase
1348	 43.43	-2	1422759..1422956	+	65	38233990	-	DIP1405	-	hypothetical protein
1349	 49.24	0	1423091..1424599	+	502	38233991	sigA	DIP1406	-	RNA polymerase sigma factor
1350	 44.94	-1	1424933..1425406	-	157	38233992	-	DIP1407	-	hypothetical protein
1351	 49.12	0	1425515..1427224	-	569	38233993	-	DIP1408	-	hypothetical protein
1352	 49.17	0	1427224..1427463	-	79	38233994	-	DIP1409	-	hypothetical protein
1353	 45.60	-1	1427523..1428011	+	162	38233995	-	DIP1410	-	hypothetical protein
1354	 48.96	-1	1428054..1429589	+	511	38233996	-	DIP1411	-	putative transferase
1355	 51.37	0	1429600..1430037	+	145	38233997	-	DIP1412	-	D-tyrosyl-tRNA deacylase
1356	 50.00	0	1430121..1431110	+	329	38233998	sigB	DIP1413	-	RNA polymerase sigma factor SigB
1357	 49.49	0	1431335..1432015	+	226	38233999	dtxR	DIP1414	-	diphtheria toxin repressor
1358	 49.75	0	1432038..1433024	+	328	38234000	galE	DIP1415	-	UDP-glucose 4-epimerase
1359	 45.21	-1	1433073..1434116	-	347	38234001	-	DIP1416	-	hypothetical protein
1360	 46.71	-1	1434368..1435309	+	313	38234002	-	DIP1417	-	hypothetical protein
1361	 46.94	-1	1435342..1437876	+	844	38234003	-	DIP1418	-	putative helicase
1362	 47.81	-1	1437952..1438476	-	174	38234004	-	DIP1419	-	hypothetical protein
1363	 49.75	0	1438479..1439075	-	198	38234005	dirA	DIP1420	-	iron repressible polypeptide (putative reductase)
1364	 51.65	0	1439301..1440239	+	312	38234006	-	DIP1421	-	putative transcriptional regulator
1365	 46.48	-1	1440295..1441260	-	321	38234007	-	DIP1422	-	hypothetical protein
1366	 47.29	-1	1441388..1445341	+	1317	38234008	-	DIP1423	-	putative ATP-dependent helicase
1367	 46.27	-1	1445404..1445859	-	151	38234009	-	DIP1424	-	transcriptional regulator NrdR
1368	 44.64	-1	1445957..1446292	-	111	38234010	-	DIP1425	-	hypothetical protein
1369	 50.70	0	1446632..1447345	+	237	38234011	lexA	DIP1426	-	LexA repressor
1370	 49.68	0	1447668..1448444	+	258	38234012	-	DIP1427	-	putative sugar related operon transcriptional regulator (PTS system)
1371	 52.51	0	1448538..1450232	-	564	38234013	ptsI	DIP1428	-	phosphoenolpyruvate:sugar phosphotransferase system enzyme I (PTS system)
1372	 50.25	0	1450500..1451303	+	267	38234014	-	DIP1429	-	putative sugar related operon transcriptional regulator (PTS system)
1373	 50.93	0	1451300..1452265	+	321	38234015	-	DIP1430	-	putative phosphofructokinase (PTS system)
1374	 52.06	0	1454634..1454900	+	88	38234016	-	DIP1435	-	putative carbohydrate carrier protein (PTS system)
1375	 49.06	-1	1455065..1456183	+	372	38234017	-	DIP1436	-	putative oxidoreductase
1376	 48.80	-1	1456242..1456907	+	221	38234018	-	DIP1437	-	putative oxidoreductase
1377	 48.64	-1	1456969..1458255	-	428	38234019	-	DIP1438	-	putative transport membrane protein
1378	 49.66	0	1458338..1459948	-	536	38234020	-	DIP1439	-	putative GTP-binding protein
1379	 52.12	0	1460095..1460850	+	251	38234021	-	DIP1440	-	hypothetical protein
1380	 44.95	-1	1460925..1461449	+	174	38234022	-	DIP1441	-	hypothetical protein
1381	 48.88	-1	1461458..1462351	-	297	38234023	dapF	DIP1442	-	diaminopimelate epimerase
1382	 48.40	-1	1462348..1463256	-	302	38234024	miaA	DIP1443	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1383	 47.56	-1	1463319..1464014	-	231	38234025	-	DIP1444	-	hypothetical protein
1384	 51.39	0	1464212..1465540	+	442	38234026	-	DIP1445	-	hypothetical protein
1385	 45.52	-1	1465728..1466753	+	341	38234027	-	DIP1446	-	hypothetical protein
1386	 46.95	-1	1466762..1467400	-	212	38234028	-	DIP1447	-	hypothetical protein
1387	 48.94	-1	1467450..1469000	-	516	38234029	-	DIP1448	-	hypothetical protein
1388	 46.91	-1	1469157..1469738	-	193	38234030	recX	DIP1449	-	recombination regulator RecX
1389	 46.74	-1	1469776..1470894	-	372	38234031	recA	DIP1450	-	recombinase A
1390	 46.88	-1	1471150..1471341	-	63	38234032	-	DIP1451	-	hypothetical protein
1391	 49.40	0	1471428..1472012	+	194	38234033	-	DIP1452	-	hypothetical protein
1392	 43.87	-2	1472076..1472768	+	230	38234034	-	DIP1453	-	ABC transporter ATP-binding protein
1393	 50.24	0	1472765..1473379	+	204	38234035	-	DIP1454	-	hypothetical protein
1394	 49.52	0	1473435..1474274	-	279	38234036	-	DIP1455	-	hypothetical protein
1395	 50.00	0	1474405..1474734	-	109	38234037	-	DIP1456	-	putative DNA-binding protein
1396	 48.80	-1	1474823..1475320	-	165	38234038	-	DIP1457	-	putative competence-damage related protein
1397	 45.69	-1	1475349..1475939	-	196	38234039	-	DIP1458	-	putative phosphatidyltransferase
1398	 47.96	-1	1476035..1476328	+	97	38234040	-	DIP1459	-	hypothetical protein
1399	 44.94	-1	1476411..1477418	-	335	38234041	-	DIP1460	-	hypothetical protein
1400	 51.21	0	1477699..1480752	-	1017	38234042	-	DIP1461	-	putative cell division protein
1401	 50.45	0	1480828..1481493	-	221	38234043	-	DIP1462	-	hypothetical protein
1402	 51.73	0	1481579..1483633	-	684	38234044	-	DIP1463	-	hypothetical protein
1403	 50.11	0	1483636..1484541	-	301	38234045	dapA	DIP1464	-	dihydrodipicolinate synthase
1404	 47.96	-1	1484623..1485381	-	252	38234046	thyX	DIP1465	-	FAD-dependent thymidylate synthase
1405	 49.80	0	1485381..1486127	-	248	38234047	dapB	DIP1466	-	dihydrodipicolinate reductase
1406	 50.75	0	1486307..1488574	-	755	38234048	gpsI	DIP1467	-	polynucleotide phosphorylase/polyadenylase
1407	 54.81	0	1488766..1489035	-	89	38234049	rpsO	DIP1468	-	30S ribosomal protein S15
1408	 50.00	0	1489207..1490166	-	319	38234050	-	DIP1469	-	putative nucleoside hydrolase
1409	 49.59	0	1490204..1491175	-	323	38234051	ribF	DIP1470	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1410	 50.61	0	1491198..1492100	+	300	38234052	truB	DIP1471	-	tRNA pseudouridine synthase B
1411	 47.76	-1	1492097..1492789	-	230	38234053	-	DIP1472	-	putative transferase
1412	 51.55	0	1492786..1493592	-	268	38234054	-	DIP1473	-	hypothetical protein
1413	 52.35	0	1493639..1494958	-	439	38234055	-	DIP1474	-	putative DNA-damage inducible protein
1414	 48.88	-1	1494955..1495848	-	297	38234056	-	DIP1475	-	hypothetical protein
1415	 49.55	0	1495936..1496379	-	147	38234057	rbfA	DIP1476	-	ribosome-binding factor A
1416	 56.46	0	1496519..1499380	-	953	38234058	infB	DIP1477	-	translation initiation factor IF-2
1417	 55.26	0	1499491..1499823	-	110	38234059	-	DIP1478	-	hypothetical protein
1418	 47.85	-1	1500079..1501077	-	332	38234060	nusA	DIP1479	-	transcription elongation factor NusA
1419	 46.49	-1	1501074..1501628	-	184	38234061	-	DIP1480	-	hypothetical protein
1420	 50.17	0	1501680..1502588	+	302	38234062	-	DIP1481	-	hypothetical protein
1421	 51.99	0	1502667..1504424	-	585	38234063	proS	DIP1482	-	prolyl-tRNA synthetase
1422	 47.93	-1	1504456..1505202	+	248	38234064	-	DIP1483	-	hypothetical protein
1423	 50.49	0	1505222..1506031	-	269	38234065	-	DIP1484	-	putative uroporphyrinogen III methyltransferase
1424	 49.81	0	1506045..1507391	+	448	38234066	-	DIP1485	-	hypothetical protein
1425	 51.38	0	1507395..1508519	-	374	38234067	-	DIP1486	-	putative cobalamin synthesis related protein
1426	 49.61	0	1508539..1509048	-	169	38234068	-	DIP1487	-	putative DNA repair related protein
1427	 52.39	0	1509038..1510417	-	459	161598673	-	DIP1488	-	cobyrinic acid a,c-diamide synthase
1428	 49.44	0	1510411..1511031	-	206	38234070	-	DIP1489	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1429	 51.73	0	1513204..1514703	-	499	38234071	mqo	DIP1492	-	malate:quinone oxidoreductase
1430	 50.49	0	1515080..1516093	+	337	38234072	-	DIP1493	-	hypothetical protein
1431	 49.28	0	1516191..1517582	+	463	38234073	-	DIP1494	-	mycothione/glutathione reductase
1432	 50.97	0	1517640..1519079	-	479	38234074	cobQ	DIP1495	-	cobyric acid synthase
1433	 47.91	-1	1519142..1520026	-	294	38234075	mapB	DIP1496	-	methionine aminopeptidase
1434	 51.10	0	1520073..1521929	-	618	38234076	-	DIP1497	-	putative secreted penicillin-binding protein
1435	 50.60	0	1522046..1523221	-	391	38234077	ispG	DIP1498	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1436	 51.44	0	1523327..1524541	-	404	38234078	-	DIP1499	-	hypothetical protein
1437	 52.32	0	1524586..1525749	-	387	38234079	dxr	DIP1500	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1438	 52.99	0	1525987..1526505	+	172	38234080	-	DIP1501	-	hypothetical protein
1439	 50.95	0	1526585..1527691	-	368	38234081	-	DIP1502	-	hypothetical protein
1440	 45.57	-1	1527861..1528244	+	127	38234082	-	DIP1503	-	hypothetical protein
1441	 48.81	-1	1528307..1529185	-	292	38234083	-	DIP1504	-	putative phospholipid biosynthesis
1442	 47.49	-1	1529309..1529866	-	185	38234084	frr	DIP1505	-	ribosome recycling factor
1443	 49.51	0	1529938..1530747	-	269	38234085	pyrH	DIP1506	-	uridylate kinase
1444	 55.19	0	1530890..1531717	-	275	38234086	tsf	DIP1507	-	elongation factor Ts
1445	 54.06	0	1531998..1532798	-	266	38234087	rpsB	DIP1508	-	30S ribosomal protein S2
1446	 49.44	0	1533166..1533699	+	177	38234088	-	DIP1509	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.