IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
85	 58.36	0	79727..80557	-	276	38232727	opuBA	DIP0097	-	choline transport system ATP-binding protein
86	 57.14	0	80567..81175	-	202	38232728	-	DIP0098	-	hypothetical protein
87	 55.56	0	81172..81756	-	194	38232729	-	DIP0099	-	putative RNA polymerase sigma factor
88	 51.63	0	81783..82181	-	132	38232730	-	DIP0100	-	hypothetical protein
89	 56.55	0	82259..83899	+	546	38232731	-	DIP0101	-	hypothetical protein
90	 55.34	0	83969..84745	-	258	38232732	tipA	DIP0102	-	transcriptional activator
91	 48.21	-1	84797..84964	-	55	38232733	-	DIP0103	-	hypothetical protein
92	 62.66	+1	84975..86321	-	448	38232734	-	DIP0104	-	putative peptidase
93	 57.93	0	86342..87394	+	350	38232735	bioB	DIP0105	-	biotin synthase
94	 62.84	+1	87394..87654	+	86	38232736	-	DIP0106	-	hypothetical protein
95	 52.78	0	88041..89228	+	395	38232737	irp6A	DIP0108	-	ferrisiderophore receptor Irp6A
96	 58.91	+1	89229..90272	+	347	38232738	irp6B	DIP0109	-	membrane protein permease Irp6B
97	 58.63	+1	90274..91032	+	252	38232739	irp6C	DIP0110	-	ATP-binding protein Irp6C
98	 57.00	0	91122..92600	+	492	38232740	-	DIP0111	-	putative lipoprotein
99	 52.70	0	92618..93025	+	135	38232741	-	DIP0112	-	hypothetical protein
100	 61.97	+1	93040..94380	+	446	38232742	-	DIP0113	-	putative riboflavin biosynthesis protein
101	 54.76	0	94403..94822	+	139	38232743	-	DIP0114	-	hypothetical protein
102	 55.90	0	94809..95876	-	355	38232744	-	DIP0115	-	hypothetical protein
103	 60.21	+1	96123..96881	-	252	38232745	-	DIP0116	-	hypothetical protein
104	 57.60	0	96976..97758	-	260	38232746	-	DIP0117	-	putative lipase
105	 62.69	+1	97855..98433	+	192	38232747	-	DIP0118	-	putative dehydrogenase
106	 48.16	-1	98438..100177	-	579	38232748	-	DIP0119	-	hypothetical protein
107	 54.07	0	100588..100722	+	44	38232749	-	DIP0121	-	putative transposon (partial)
108	 55.32	0	101238..101792	+	184	38232750	-	DIP0122	-	putative siderophore binding protein
109	 62.06	+1	101789..102787	-	332	38232751	-	DIP0123	-	hypothetical protein
110	 62.95	+1	103155..104525	+	456	38232752	-	DIP0124	-	hypothetical protein
111	 55.80	0	104676..105761	+	361	38232753	-	DIP0125	-	hypothetical protein
112	 60.53	+1	105773..107386	+	537	38232754	-	DIP0126	-	hypothetical protein
113	 53.93	0	107390..107860	+	156	38232755	-	DIP0127	-	MarR family regulatory protein
114	 58.59	+1	107838..108890	-	350	38232756	-	DIP0128	-	hypothetical protein
115	 57.95	0	108895..109479	-	194	38232757	-	DIP0129	-	hypothetical protein
116	 60.18	+1	109478..110248	+	256	38232758	-	DIP0130	-	hypothetical protein
117	 61.76	+1	110238..112583	-	781	38232759	-	DIP0131	-	putative ATP-dependent helicase
118	 58.07	0	112573..113142	-	189	38232760	-	DIP0132	-	putative sugar acetyltransferase
119	 59.65	+1	113144..113884	+	246	38232761	-	DIP0133	-	putative DNA repair protein
120	 58.16	0	113937..114524	+	195	38232762	-	DIP0134	-	putative DNA-repair protein
121	 54.60	0	114529..115257	+	242	38232763	-	DIP0135	-	putative oxidoreductase
122	 58.89	+1	115518..116276	+	252	38232764	-	DIP0136	-	putative lipoprotein
123	 50.00	0	116460..116687	-	75	38232765	-	DIP0137	-	hypothetical protein
124	 50.79	0	116920..117045	-	41	38232766	-	DIP0138	-	hypothetical protein
125	 44.24	-2	117050..117379	-	109	38232767	-	DIP0139	-	hypothetical protein
126	 50.90	0	117622..117900	-	92	38232768	-	DIP0140	-	hypothetical protein
127	 47.22	-1	118089..118232	+	47	38232769	-	DIP0141	-	hypothetical protein
128	 57.93	0	118306..118980	+	224	38232770	-	DIP0142	-	hypothetical protein
129	 55.05	0	120068..120265	-	65	38232771	-	DIP0145	-	hypothetical protein
130	 44.36	-2	120487..120867	+	126	38232772	-	DIP0146	-	putative integral membrane protein
131	 47.22	-1	120867..120974	+	35	38232773	-	DIP0147	-	putative lipoprotein
132	 56.67	0	121423..121722	+	99	38232774	-	DIP0149	-	hypothetical protein
133	 58.30	0	121722..122546	+	274	38232775	-	DIP0150	-	hypothetical protein
134	 62.42	+1	122552..122857	+	101	38232776	-	DIP0151	-	hypothetical protein
135	 60.15	+1	122867..123787	-	306	38232777	-	DIP0152	-	hypothetical protein
136	 59.33	+1	123927..124553	+	208	38232778	-	DIP0153	-	hypothetical protein
137	 57.76	0	124561..126570	-	669	38232779	-	DIP0154	-	putative endopeptidase
138	 56.40	0	126599..127231	+	210	38232780	-	DIP0155	-	hypothetical protein
139	 57.33	0	127228..128148	+	306	38232781	-	DIP0156	-	hypothetical protein
140	 57.10	0	128138..129046	+	302	38232782	-	DIP0157	-	hypothetical protein
141	 57.53	0	129067..129504	-	145	38232783	-	DIP0158	-	hypothetical protein
142	 60.01	+1	129730..133155	-	1141	38232784	-	DIP0159	-	putative transferase
143	 56.12	0	133148..135232	-	694	38232785	-	DIP0160	-	hypothetical protein
144	 59.32	+1	135343..136104	-	253	38232786	-	DIP0161	-	short chain dehydrogenase
145	 59.44	+1	136124..137590	-	488	38232787	-	DIP0162	-	putative oxidoreductase, FAD-binding
146	 53.41	0	137707..137955	-	82	38232788	-	DIP0163	-	hypothetical protein
147	 59.77	+1	137984..138418	+	144	38232789	-	DIP0164	-	hypothetical protein
148	 60.84	+1	138415..138963	+	182	38232790	-	DIP0165	-	hypothetical protein
149	 55.95	0	138975..139394	+	139	38232791	-	DIP0166	-	hypothetical protein
150	 56.67	0	139604..140383	+	259	38232792	-	DIP0167	-	hypothetical protein
151	 63.73	+2	140517..141434	-	305	38232793	-	DIP0168	-	putative glycosyl transferase
152	 52.90	0	141608..142573	+	321	38232794	-	DIP0169	-	hypothetical protein
153	 54.56	0	142673..143407	+	244	38232795	-	DIP0170	-	hypothetical protein
154	 55.78	0	143404..144303	+	299	38232796	-	DIP0171	-	hypothetical protein
155	 56.92	0	144300..145151	+	283	38232797	-	DIP0172	-	hypothetical protein
156	 57.29	0	145272..146273	+	333	38232798	-	DIP0173	-	hypothetical protein
157	 59.49	+1	146339..147118	-	259	38232799	-	DIP0174	-	ABC transporter ATP-binding protein
158	 61.32	+1	147137..147997	-	286	38232800	-	DIP0175	-	ABC transporter permease
159	 60.97	+1	148133..149326	+	397	38232801	-	DIP0176	-	hypothetical protein
160	 60.76	+1	149323..150270	-	315	38232802	-	DIP0177	-	putative quinone oxidoreductase
161	 60.10	+1	150627..151661	-	344	38232803	-	DIP0178	-	putative aminotransferase
162	 53.08	0	152426..154000	+	524	38232804	-	DIP0179	-	hypothetical protein
163	 46.19	-1	154365..154994	+	209	38232805	-	DIP0180	-	hypothetical protein
164	 42.12	-2	155099..155371	+	90	38232806	-	DIP0181	-	hypothetical protein
165	 54.60	0	155600..156826	-	408	38232807	-	DIP0182	-	putative phage integrase
166	 53.57	0	156926..157948	-	340	38232808	-	DIP0183	-	putative transcriptional regulator
167	 55.67	0	157960..158523	-	187	38232809	-	DIP0184	-	hypothetical protein
168	 56.62	0	158618..159025	-	135	38232810	-	DIP0185	-	hypothetical protein
169	 58.64	+1	159035..159196	-	53	38232811	-	DIP0186	-	hypothetical protein
170	 55.56	0	159639..159881	+	80	38232812	-	DIP0187	-	putative transcriptional regulator
171	 57.49	0	160120..160446	-	108	38232813	-	DIP0188	-	hypothetical protein
172	 48.78	-1	160470..160961	+	163	38232814	-	DIP0189	-	hypothetical protein
173	 49.57	0	160942..161760	+	272	38232815	-	DIP0190	-	putative anti-repressor protein
174	 47.33	-1	161977..162219	+	80	38232816	-	DIP0191	-	hypothetical protein
175	 46.67	-1	162231..162455	+	74	38232817	-	DIP0192	-	hypothetical protein
176	 51.02	0	162452..162598	+	48	38232818	-	DIP0193	-	hypothetical protein
177	 55.93	0	162606..162875	+	89	38232819	-	DIP0194	-	hypothetical protein
178	 46.67	-1	162868..163017	+	49	38232820	-	DIP0195	-	hypothetical protein
179	 49.10	-1	163014..163457	+	147	38232821	-	DIP0196	-	hypothetical protein
180	 52.99	0	163482..163715	+	77	38232822	-	DIP0197	-	hypothetical protein
181	 50.16	0	163814..164122	+	102	38232823	-	DIP0197A	-	hypothetical protein
182	 57.07	0	164151..165359	+	402	38232824	-	DIP0198	-	hypothetical protein
183	 51.06	0	165352..165966	+	204	38232825	-	DIP0199	-	hypothetical protein
184	 55.35	0	166018..166335	+	105	38232826	-	DIP0200	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.