IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1262	 46.14	-1	1330056..1330664	-	202	38233904	ribE	DIP1318	-	riboflavin synthase subunit alpha
1263	 47.86	-1	1330722..1331726	-	334	38233905	ribD	DIP1319	-	putative riboflavin biosynthesis protein
1264	 45.48	-1	1331821..1332495	-	224	38233906	rpe	DIP1320	-	ribulose-phosphate 3-epimerase
1265	 49.31	0	1332549..1334006	-	485	38233907	-	DIP1321	-	hypothetical protein
1266	 49.79	0	1334003..1334938	-	311	38233908	fmt	DIP1322	-	methionyl-tRNA formyltransferase
1267	 46.47	-1	1334975..1335484	-	169	38233909	def	DIP1323	-	peptide deformylase
1268	 48.57	-1	1335564..1337591	-	675	38233910	-	DIP1324	-	primosome assembly protein PriA
1269	 50.45	0	1337610..1338842	-	410	38233911	metK	DIP1325	-	S-adenosylmethionine synthetase
1270	 48.67	-1	1338983..1340227	-	414	38233912	dfp	DIP1326	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1271	 50.18	0	1340329..1340607	-	92	38233913	rpoZ	DIP1327	-	DNA-directed RNA polymerase subunit omega
1272	 51.91	0	1340681..1341256	-	191	38233914	gmk	DIP1328	-	guanylate kinase
1273	 54.32	0	1341260..1341583	-	107	38233915	mihF	DIP1329	-	integration host factor
1274	 50.06	0	1341932..1342780	-	282	38233916	pyrF	DIP1330	-	orotidine 5'-phosphate decarboxylase
1275	 49.48	0	1342777..1346133	-	1118	38233917	carB	DIP1331	-	carbamoyl phosphate synthase large subunit
1276	 47.98	-1	1346154..1347293	-	379	38233918	carA	DIP1332	-	carbamoyl phosphate synthase small subunit
1277	 50.71	0	1347449..1348795	-	448	38233919	pyrC	DIP1333	-	dihydroorotase
1278	 49.04	-1	1348820..1349761	-	313	38233920	pyrB	DIP1334	-	aspartate carbamoyltransferase catalytic subunit
1279	 46.77	-1	1349761..1350333	-	190	38233921	pyrR	DIP1335	-	pyrimidine regulatory protein PyrR
1280	 49.78	0	1350598..1351959	+	453	38233922	-	DIP1336	-	hypothetical protein
1281	 42.01	-2	1351965..1352402	+	145	38233923	-	DIP1337	-	hypothetical protein
1282	 43.31	-2	1352402..1352812	+	136	38233924	-	DIP1338	-	hypothetical protein
1283	 49.18	0	1352866..1353414	-	182	38233925	nusB	DIP1339	-	transcription antitermination protein NusB
1284	 50.35	0	1353483..1354046	-	187	38233926	efp	DIP1340	-	elongation factor P
1285	 46.99	-1	1354148..1355245	-	365	38233927	-	DIP1341	-	putative metallopeptidase
1286	 45.35	-1	1355271..1355711	-	146	38233928	aroQ	DIP1342	-	3-dehydroquinate dehydratase
1287	 45.65	-1	1355712..1356791	-	359	38233929	aroB	DIP1343	-	3-dehydroquinate synthase
1288	 48.66	-1	1356838..1357359	-	173	38233930	aroK	DIP1344	-	shikimate kinase
1289	 49.34	0	1357394..1358605	-	403	38233931	aroC	DIP1345	-	chorismate synthase
1290	 46.15	-1	1358683..1359189	-	168	38233932	-	DIP1346	-	hypothetical protein
1291	 46.44	-1	1359196..1360065	-	289	38233933	aroE	DIP1347	-	shikimate 5-dehydrogenase
1292	 48.74	-1	1360160..1361308	-	382	38233934	-	DIP1348	-	hypothetical protein
1293	 46.20	-1	1361421..1361972	-	183	38233935	-	DIP1349	-	Holliday junction resolvase-like protein
1294	 49.16	0	1362202..1364868	-	888	38233936	alaS	DIP1350	-	alanyl-tRNA synthetase
1295	 47.48	-1	1365030..1366400	-	456	38233937	-	DIP1351	-	recombination factor protein RarA
1296	 46.56	-1	1366425..1367687	-	420	38233938	-	DIP1352	-	hypothetical protein
1297	 50.78	0	1367810..1369615	-	601	38233939	aspS	DIP1353	-	aspartyl-tRNA synthetase
1298	 48.70	-1	1369837..1370721	+	294	38233940	-	DIP1354	-	hypothetical protein
1299	 46.03	-1	1370802..1373456	-	884	38233941	-	DIP1355	-	hypothetical protein
1300	 50.25	0	1373535..1375556	-	673	38233942	-	DIP1356	-	hypothetical protein
1301	 49.39	0	1375574..1376308	-	244	38233943	-	DIP1357	-	hypothetical protein
1302	 48.73	-1	1376471..1377061	+	196	38233944	-	DIP1358	-	TetR family transcriptional regulator
1303	 50.83	0	1377106..1378494	+	462	38233945	sdaB	DIP1359	-	L-serine dehydratase
1304	 51.97	0	1378566..1379837	-	423	38233946	hisS	DIP1360	-	histidyl-tRNA synthetase
1305	 48.10	-1	1379878..1380534	-	218	38233947	-	DIP1361	-	hypothetical protein
1306	 46.39	-1	1380544..1381041	-	165	38233948	tpx	DIP1362	-	thiol peroxidase
1307	 49.70	0	1381185..1382027	+	280	38233949	-	DIP1363	-	putative isomerase
1308	 45.74	-1	1382185..1382466	+	93	38233950	-	DIP1364	-	hypothetical protein
1309	 51.77	0	1382517..1382657	+	46	38233951	-	DIP1365	-	hypothetical protein
1310	 48.99	-1	1382700..1384079	+	459	38233952	-	DIP1366	-	putative transposase
1311	 48.64	-1	1384750..1387029	-	759	38233953	relA	DIP1368	-	GTP pyrophosphokinase
1312	 50.45	0	1387088..1387642	-	184	38233954	apt	DIP1369	-	adenine phosphoribosyltransferase
1313	 47.49	-1	1387698..1389449	-	583	38233955	-	DIP1370	-	hypothetical protein
1314	 47.35	-1	1389519..1390631	-	370	38233956	secF	DIP1371	-	preprotein translocase subunit SecF
1315	 49.07	-1	1390632..1392410	-	592	38233957	secD	DIP1372	-	preprotein translocase subunit SecD
1316	 44.62	-1	1392415..1392600	-	61	38233958	-	DIP1373	-	hypothetical protein
1317	 42.86	-2	1392641..1392934	-	97	38233959	-	DIP1374	-	hypothetical protein
1318	 50.05	0	1392938..1394026	-	362	38233960	ruvB	DIP1375	-	Holliday junction DNA helicase B
1319	 49.18	0	1394044..1394655	-	203	38233961	ruvA	DIP1376	-	Holliday junction DNA helicase motor protein
1320	 52.64	0	1394694..1395185	-	163	38233962	ruvC	DIP1377	-	Holliday junction resolvase
1321	 49.40	0	1395368..1396120	-	250	38233963	yfcA	DIP1378	-	hypothetical protein
1322	 49.01	-1	1396358..1397212	-	284	38233964	tesB	DIP1379	-	putative acyl-CoA thioesterase II
1323	 44.85	-1	1397443..1398588	+	381	38233965	-	DIP1380	-	hypothetical protein
1324	 49.19	0	1398642..1399385	+	247	38233966	-	DIP1381	-	6-carboxyhexanoate--CoA ligase
1325	 48.87	-1	1399385..1400575	+	396	38233967	-	DIP1382	-	putative aminotransferase (biotin synthesis related protein)
1326	 46.10	-1	1400572..1401033	-	153	38233968	-	DIP1383	-	hypothetical protein
1327	 47.62	-1	1401045..1402136	-	363	38233969	-	DIP1384	-	putative transferase (LPS related)
1328	 47.35	-1	1402163..1403104	-	313	38233970	-	DIP1385	-	lipid A biosynthesis lauroyl acyltransferase
1329	 48.17	-1	1403131..1403784	-	217	38233971	-	DIP1386	-	putative phosphatidyltransferase
1330	 49.74	0	1403777..1404361	-	194	38233972	-	DIP1387	-	hypothetical protein
1331	 48.59	-1	1404545..1406608	-	687	38233973	thrS	DIP1388	-	threonyl-tRNA synthetase
1332	 50.29	0	1406797..1408017	-	406	38233974	-	DIP1389	-	hypothetical protein
1333	 46.83	-1	1408111..1408725	-	204	38233975	-	DIP1390	-	hypothetical protein
1334	 44.50	-1	1408732..1409376	-	214	38233976	-	DIP1391	-	hypothetical protein
1335	 46.05	-1	1410549..1411358	+	269	38233977	-	DIP1392	-	hypothetical protein
1336	 48.18	-1	1411416..1411826	+	136	38233978	-	DIP1393	-	hypothetical protein
1337	 47.66	-1	1411905..1412609	-	234	38233979	-	DIP1394	-	hypothetical protein
1338	 51.37	0	1412834..1413415	+	193	38233980	-	DIP1395	-	hypothetical protein
1339	 48.45	-1	1413434..1414657	+	407	38233981	-	DIP1396	-	putative ribonuclease
1340	 47.69	-1	1414718..1416625	-	635	38233982	dxs	DIP1397	-	1-deoxy-D-xylulose-5-phosphate synthase
1341	 48.06	-1	1416837..1418099	-	420	38233983	-	DIP1398	-	hypothetical protein
1342	 49.72	0	1418417..1419136	-	239	38233984	-	DIP1399	-	hypothetical protein
1343	 49.67	0	1419195..1419653	-	152	38233985	dut	DIP1400	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1344	 49.32	0	1419796..1420308	+	170	38233986	-	DIP1401	-	hypothetical protein
1345	 46.94	-1	1420344..1420637	-	97	38233987	-	DIP1402	-	hypothetical protein
1346	 47.48	-1	1420829..1421662	-	277	38233988	-	DIP1403	-	putative hydrolase
1347	 50.66	0	1421865..1422626	+	253	38233989	ppgK	DIP1404	-	polyphosphate glucokinase
1348	 43.43	-2	1422759..1422956	+	65	38233990	-	DIP1405	-	hypothetical protein
1349	 49.24	0	1423091..1424599	+	502	38233991	sigA	DIP1406	-	RNA polymerase sigma factor
1350	 44.94	-1	1424933..1425406	-	157	38233992	-	DIP1407	-	hypothetical protein
1351	 49.12	0	1425515..1427224	-	569	38233993	-	DIP1408	-	hypothetical protein
1352	 49.17	0	1427224..1427463	-	79	38233994	-	DIP1409	-	hypothetical protein
1353	 45.60	-1	1427523..1428011	+	162	38233995	-	DIP1410	-	hypothetical protein
1354	 48.96	-1	1428054..1429589	+	511	38233996	-	DIP1411	-	putative transferase
1355	 51.37	0	1429600..1430037	+	145	38233997	-	DIP1412	-	D-tyrosyl-tRNA deacylase
1356	 50.00	0	1430121..1431110	+	329	38233998	sigB	DIP1413	-	RNA polymerase sigma factor SigB
1357	 49.49	0	1431335..1432015	+	226	38233999	dtxR	DIP1414	-	diphtheria toxin repressor
1358	 49.75	0	1432038..1433024	+	328	38234000	galE	DIP1415	-	UDP-glucose 4-epimerase
1359	 45.21	-1	1433073..1434116	-	347	38234001	-	DIP1416	-	hypothetical protein
1360	 46.71	-1	1434368..1435309	+	313	38234002	-	DIP1417	-	hypothetical protein
1361	 46.94	-1	1435342..1437876	+	844	38234003	-	DIP1418	-	putative helicase
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.