IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1233	 45.69	-1	1298797..1299225	-	142	38233875	-	DIP1290	-	hypothetical protein
1234	 43.33	-2	1299222..1299671	-	149	38233876	-	DIP1291	-	putative nitrogen fixation protein NifU-related protein
1235	 48.71	-1	1299675..1300955	-	426	38233877	csd	DIP1292	-	cysteine desulfurase
1236	 47.30	-1	1300955..1301713	-	252	38233878	-	DIP1293	-	ABC transporter ATP-binding protein
1237	 48.81	-1	1301742..1302917	-	391	38233879	-	DIP1294	-	hypothetical protein
1238	 48.55	-1	1302920..1304299	-	459	38233880	-	DIP1295	-	hypothetical protein
1239	 48.95	-1	1304371..1305087	-	238	38233881	-	DIP1296	-	putative DNA-binding protein
1240	 42.70	-2	1305304..1305666	-	120	38233882	-	DIP1296A	-	hypothetical protein
1241	 48.82	-1	1305862..1307424	+	520	38233883	-	DIP1297	-	hypothetical protein
1242	 45.72	-1	1307491..1308402	+	303	38233884	-	DIP1298	-	ABC transporter ATP-binding protein
1243	 46.74	-1	1308405..1309202	+	265	38233885	-	DIP1299	-	hypothetical protein
1244	 49.73	0	1309283..1310221	+	312	38233886	-	DIP1300	-	hypothetical protein
1245	 47.48	-1	1310339..1311271	-	310	38233887	-	DIP1301	-	protoheme IX farnesyltransferase
1246	 52.31	0	1311649..1313751	+	700	38233888	tkt	DIP1302	-	transketolase
1247	 47.92	-1	1313875..1314957	+	360	38233889	tal	DIP1303	-	transaldolase
1248	 50.55	0	1315019..1316668	+	549	38233890	zwf	DIP1304	-	glucose-6-phosphate 1-dehydrogenase
1249	 51.25	0	1316693..1317652	+	319	38233891	-	DIP1305	-	hypothetical protein
1250	 48.81	-1	1317678..1318394	+	238	38233892	-	DIP1306	-	6-phosphogluconolactonase
1251	 46.15	-1	1318462..1318695	-	77	38233893	secG	DIP1307	-	preprotein translocase subunit SecG
1252	 48.66	-1	1318869..1319651	-	260	38233894	tpiA	DIP1308	-	triosephosphate isomerase
1253	 49.75	0	1319763..1320980	-	405	38233895	pgk	DIP1309	-	phosphoglycerate kinase
1254	 50.25	0	1321111..1322115	-	334	38233896	gap	DIP1310	-	glyceraldehyde-3-phosphate dehydrogenase
1255	 49.24	0	1322488..1323474	-	328	38233897	-	DIP1311	-	hypothetical protein
1256	 50.93	0	1323568..1324539	-	323	38233898	-	DIP1312	-	hypothetical protein
1257	 46.67	-1	1324558..1325457	-	299	38233899	-	DIP1313	-	hypothetical protein
1258	 46.66	-1	1325463..1327526	-	687	38233900	uvrC	DIP1314	-	excinuclease ABC subunit C
1259	 45.10	-1	1327536..1328096	-	186	38233901	-	DIP1315	-	hypothetical protein
1260	 49.15	0	1328235..1328702	-	155	38233902	ribH	DIP1316	-	riboflavin synthase subunit beta
1261	 49.72	0	1328703..1329941	-	412	38233903	ribA	DIP1317	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1262	 46.14	-1	1330056..1330664	-	202	38233904	ribE	DIP1318	-	riboflavin synthase subunit alpha
1263	 47.86	-1	1330722..1331726	-	334	38233905	ribD	DIP1319	-	putative riboflavin biosynthesis protein
1264	 45.48	-1	1331821..1332495	-	224	38233906	rpe	DIP1320	-	ribulose-phosphate 3-epimerase
1265	 49.31	0	1332549..1334006	-	485	38233907	-	DIP1321	-	hypothetical protein
1266	 49.79	0	1334003..1334938	-	311	38233908	fmt	DIP1322	-	methionyl-tRNA formyltransferase
1267	 46.47	-1	1334975..1335484	-	169	38233909	def	DIP1323	-	peptide deformylase
1268	 48.57	-1	1335564..1337591	-	675	38233910	-	DIP1324	-	primosome assembly protein PriA
1269	 50.45	0	1337610..1338842	-	410	38233911	metK	DIP1325	-	S-adenosylmethionine synthetase
1270	 48.67	-1	1338983..1340227	-	414	38233912	dfp	DIP1326	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1271	 50.18	0	1340329..1340607	-	92	38233913	rpoZ	DIP1327	-	DNA-directed RNA polymerase subunit omega
1272	 51.91	0	1340681..1341256	-	191	38233914	gmk	DIP1328	-	guanylate kinase
1273	 54.32	0	1341260..1341583	-	107	38233915	mihF	DIP1329	-	integration host factor
1274	 50.06	0	1341932..1342780	-	282	38233916	pyrF	DIP1330	-	orotidine 5'-phosphate decarboxylase
1275	 49.48	0	1342777..1346133	-	1118	38233917	carB	DIP1331	-	carbamoyl phosphate synthase large subunit
1276	 47.98	-1	1346154..1347293	-	379	38233918	carA	DIP1332	-	carbamoyl phosphate synthase small subunit
1277	 50.71	0	1347449..1348795	-	448	38233919	pyrC	DIP1333	-	dihydroorotase
1278	 49.04	-1	1348820..1349761	-	313	38233920	pyrB	DIP1334	-	aspartate carbamoyltransferase catalytic subunit
1279	 46.77	-1	1349761..1350333	-	190	38233921	pyrR	DIP1335	-	pyrimidine regulatory protein PyrR
1280	 49.78	0	1350598..1351959	+	453	38233922	-	DIP1336	-	hypothetical protein
1281	 42.01	-2	1351965..1352402	+	145	38233923	-	DIP1337	-	hypothetical protein
1282	 43.31	-2	1352402..1352812	+	136	38233924	-	DIP1338	-	hypothetical protein
1283	 49.18	0	1352866..1353414	-	182	38233925	nusB	DIP1339	-	transcription antitermination protein NusB
1284	 50.35	0	1353483..1354046	-	187	38233926	efp	DIP1340	-	elongation factor P
1285	 46.99	-1	1354148..1355245	-	365	38233927	-	DIP1341	-	putative metallopeptidase
1286	 45.35	-1	1355271..1355711	-	146	38233928	aroQ	DIP1342	-	3-dehydroquinate dehydratase
1287	 45.65	-1	1355712..1356791	-	359	38233929	aroB	DIP1343	-	3-dehydroquinate synthase
1288	 48.66	-1	1356838..1357359	-	173	38233930	aroK	DIP1344	-	shikimate kinase
1289	 49.34	0	1357394..1358605	-	403	38233931	aroC	DIP1345	-	chorismate synthase
1290	 46.15	-1	1358683..1359189	-	168	38233932	-	DIP1346	-	hypothetical protein
1291	 46.44	-1	1359196..1360065	-	289	38233933	aroE	DIP1347	-	shikimate 5-dehydrogenase
1292	 48.74	-1	1360160..1361308	-	382	38233934	-	DIP1348	-	hypothetical protein
1293	 46.20	-1	1361421..1361972	-	183	38233935	-	DIP1349	-	Holliday junction resolvase-like protein
1294	 49.16	0	1362202..1364868	-	888	38233936	alaS	DIP1350	-	alanyl-tRNA synthetase
1295	 47.48	-1	1365030..1366400	-	456	38233937	-	DIP1351	-	recombination factor protein RarA
1296	 46.56	-1	1366425..1367687	-	420	38233938	-	DIP1352	-	hypothetical protein
1297	 50.78	0	1367810..1369615	-	601	38233939	aspS	DIP1353	-	aspartyl-tRNA synthetase
1298	 48.70	-1	1369837..1370721	+	294	38233940	-	DIP1354	-	hypothetical protein
1299	 46.03	-1	1370802..1373456	-	884	38233941	-	DIP1355	-	hypothetical protein
1300	 50.25	0	1373535..1375556	-	673	38233942	-	DIP1356	-	hypothetical protein
1301	 49.39	0	1375574..1376308	-	244	38233943	-	DIP1357	-	hypothetical protein
1302	 48.73	-1	1376471..1377061	+	196	38233944	-	DIP1358	-	TetR family transcriptional regulator
1303	 50.83	0	1377106..1378494	+	462	38233945	sdaB	DIP1359	-	L-serine dehydratase
1304	 51.97	0	1378566..1379837	-	423	38233946	hisS	DIP1360	-	histidyl-tRNA synthetase
1305	 48.10	-1	1379878..1380534	-	218	38233947	-	DIP1361	-	hypothetical protein
1306	 46.39	-1	1380544..1381041	-	165	38233948	tpx	DIP1362	-	thiol peroxidase
1307	 49.70	0	1381185..1382027	+	280	38233949	-	DIP1363	-	putative isomerase
1308	 45.74	-1	1382185..1382466	+	93	38233950	-	DIP1364	-	hypothetical protein
1309	 51.77	0	1382517..1382657	+	46	38233951	-	DIP1365	-	hypothetical protein
1310	 48.99	-1	1382700..1384079	+	459	38233952	-	DIP1366	-	putative transposase
1311	 48.64	-1	1384750..1387029	-	759	38233953	relA	DIP1368	-	GTP pyrophosphokinase
1312	 50.45	0	1387088..1387642	-	184	38233954	apt	DIP1369	-	adenine phosphoribosyltransferase
1313	 47.49	-1	1387698..1389449	-	583	38233955	-	DIP1370	-	hypothetical protein
1314	 47.35	-1	1389519..1390631	-	370	38233956	secF	DIP1371	-	preprotein translocase subunit SecF
1315	 49.07	-1	1390632..1392410	-	592	38233957	secD	DIP1372	-	preprotein translocase subunit SecD
1316	 44.62	-1	1392415..1392600	-	61	38233958	-	DIP1373	-	hypothetical protein
1317	 42.86	-2	1392641..1392934	-	97	38233959	-	DIP1374	-	hypothetical protein
1318	 50.05	0	1392938..1394026	-	362	38233960	ruvB	DIP1375	-	Holliday junction DNA helicase B
1319	 49.18	0	1394044..1394655	-	203	38233961	ruvA	DIP1376	-	Holliday junction DNA helicase motor protein
1320	 52.64	0	1394694..1395185	-	163	38233962	ruvC	DIP1377	-	Holliday junction resolvase
1321	 49.40	0	1395368..1396120	-	250	38233963	yfcA	DIP1378	-	hypothetical protein
1322	 49.01	-1	1396358..1397212	-	284	38233964	tesB	DIP1379	-	putative acyl-CoA thioesterase II
1323	 44.85	-1	1397443..1398588	+	381	38233965	-	DIP1380	-	hypothetical protein
1324	 49.19	0	1398642..1399385	+	247	38233966	-	DIP1381	-	6-carboxyhexanoate--CoA ligase
1325	 48.87	-1	1399385..1400575	+	396	38233967	-	DIP1382	-	putative aminotransferase (biotin synthesis related protein)
1326	 46.10	-1	1400572..1401033	-	153	38233968	-	DIP1383	-	hypothetical protein
1327	 47.62	-1	1401045..1402136	-	363	38233969	-	DIP1384	-	putative transferase (LPS related)
1328	 47.35	-1	1402163..1403104	-	313	38233970	-	DIP1385	-	lipid A biosynthesis lauroyl acyltransferase
1329	 48.17	-1	1403131..1403784	-	217	38233971	-	DIP1386	-	putative phosphatidyltransferase
1330	 49.74	0	1403777..1404361	-	194	38233972	-	DIP1387	-	hypothetical protein
1331	 48.59	-1	1404545..1406608	-	687	38233973	thrS	DIP1388	-	threonyl-tRNA synthetase
1332	 50.29	0	1406797..1408017	-	406	38233974	-	DIP1389	-	hypothetical protein
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.