IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1183	 48.89	-1	1238888..1239652	-	254	38233825	-	DIP1237	-	hypothetical protein
1184	 48.25	-1	1239661..1240800	-	379	38233826	-	DIP1238	-	putative dipeptidase
1185	 49.91	0	1240851..1243643	-	930	38233827	-	DIP1239	-	putative helicase
1186	 45.22	-1	1243744..1244214	+	156	38233828	-	DIP1240	-	putative tRNA/rRNA methyltransferase
1187	 48.40	-1	1244300..1245394	-	364	38233829	tatC	DIP1241	-	Sec-independent twin-arginine translocase system protein
1188	 49.06	-1	1245467..1245733	-	88	38233830	tatA	DIP1242	-	twin argininte translocase protein A
1189	 47.29	-1	1245768..1246727	-	319	38233831	-	DIP1243	-	hypothetical protein
1190	 49.08	-1	1246792..1247769	-	325	38233832	-	DIP1244	-	hypothetical protein
1191	 47.36	-1	1247794..1249233	-	479	38233833	-	DIP1245	-	hypothetical protein
1192	 45.13	-1	1249238..1249432	-	64	38233834	-	DIP1246	-	hypothetical protein
1193	 46.43	-1	1249490..1251016	-	508	38233835	-	DIP1247	-	hypothetical protein
1194	 47.97	-1	1251013..1252542	-	509	38233836	-	DIP1248	-	ATPase
1195	 51.37	0	1252639..1253475	-	278	38233837	-	DIP1249	-	hypothetical protein
1196	 47.53	-1	1253482..1254840	-	452	38233838	-	DIP1250	-	putative aminopeptidase 2
1197	 47.64	-1	1254942..1255808	+	288	38233839	-	DIP1251	-	hypothetical protein
1198	 45.56	-1	1255902..1256171	+	89	38233840	-	DIP1252	-	putative virulence-associated protein
1199	 47.91	-1	1256231..1257883	-	550	38233841	fhs	DIP1253	-	formate--tetrahydrofolate ligase
1200	 49.65	0	1258020..1259594	-	524	38233842	aspA	DIP1254	-	aspartate ammonia-lyase
1201	 51.61	0	1259869..1261176	-	435	38233843	dcuA	DIP1255	-	anaerobic C4-dicarboxylate transporter
1202	 47.40	-1	1261537..1262382	-	281	38233844	hisG	DIP1256	-	ATP phosphoribosyltransferase
1203	 46.21	-1	1262464..1262727	-	87	38233845	hisE	DIP1257	-	phosphoribosyl-ATP pyrophosphatase
1204	 45.69	-1	1262746..1263441	-	231	38233846	-	DIP1258	-	putative hydrolase
1205	 48.06	-1	1263485..1267090	-	1201	38233847	metH	DIP1259	-	5-methyltetrahydrofolate--homocysteine methyltransferase
1206	 44.19	-2	1267163..1267558	-	131	38233848	-	DIP1260	-	hypothetical protein
1207	 47.79	-1	1267559..1268803	-	414	38233849	cysS	DIP1261	-	cysteinyl-tRNA synthetase
1208	 47.59	-1	1268849..1269697	-	282	38233850	uppP	DIP1262	-	undecaprenyl pyrophosphate phosphatase
1209	 47.81	-1	1269829..1270878	+	349	38233851	-	DIP1263	-	putative lipoprotein
1210	 50.09	0	1270943..1272034	+	363	38233852	pyrD	DIP1264	-	dihydroorotate dehydrogenase 2
1211	 47.22	-1	1272452..1272991	-	179	38233853	-	DIP1265	-	hypothetical protein
1212	 48.99	-1	1273380..1274759	+	459	38233854	-	DIP1266	-	putative transposase
1213	 48.53	-1	1276058..1276807	-	249	38233855	-	DIP1270	-	putative sulfurtransferase
1214	 47.56	-1	1276921..1277925	-	334	38233856	-	DIP1271	-	arginine/ornithine transport system ATPase
1215	 51.45	0	1278111..1280318	-	735	38233857	sbm	DIP1272	-	methylmalonyl-CoA mutase
1216	 50.39	0	1280321..1282132	-	603	38233858	-	DIP1273	-	putative methylmalonyl-CoA mutase small subunit
1217	 44.59	-1	1282382..1283083	+	233	38233859	-	DIP1274	-	hypothetical protein
1218	 49.74	0	1283144..1283710	+	188	38233860	-	DIP1275	-	putative DNA-binding protein
1219	 47.16	-1	1283795..1284922	-	375	38233861	-	DIP1276	-	hypothetical protein
1220	 46.21	-1	1284919..1285353	-	144	38233862	-	DIP1277	-	hypothetical protein
1221	 46.86	-1	1285420..1286262	-	280	38233863	-	DIP1278	-	hypothetical protein
1222	 49.24	0	1286298..1287083	+	261	38233864	-	DIP1279	-	hypothetical protein
1223	 44.32	-2	1287056..1288165	-	369	38233865	hemH	DIP1280	-	ferrochelatase
1224	 48.57	-1	1288281..1289999	-	572	38233866	-	DIP1281	-	putative invasion protein
1225	 47.55	-1	1290514..1290717	+	67	38233867	-	DIP1282	-	hypothetical protein
1226	 50.34	0	1290749..1293565	+	938	161598674	acnA	DIP1283	-	aconitate hydratase
1227	 49.91	0	1293673..1294245	+	190	38233869	-	DIP1284	-	putative TetR-famlily transcriptional regulator
1228	 45.13	-1	1294271..1294999	+	242	38233870	-	DIP1285	-	glutamine amidotransferase
1229	 43.33	-2	1295088..1295357	+	89	38233871	-	DIP1286	-	hypothetical protein
1230	 50.26	0	1295374..1296738	+	454	38233872	-	DIP1287	-	hypothetical protein
1231	 42.97	-2	1296797..1297045	-	82	38233873	-	DIP1288	-	hypothetical protein
1232	 49.63	0	1297069..1298700	-	543	38233874	-	DIP1289	-	ABC transporter ATP-binding protein
1233	 45.69	-1	1298797..1299225	-	142	38233875	-	DIP1290	-	hypothetical protein
1234	 43.33	-2	1299222..1299671	-	149	38233876	-	DIP1291	-	putative nitrogen fixation protein NifU-related protein
1235	 48.71	-1	1299675..1300955	-	426	38233877	csd	DIP1292	-	cysteine desulfurase
1236	 47.30	-1	1300955..1301713	-	252	38233878	-	DIP1293	-	ABC transporter ATP-binding protein
1237	 48.81	-1	1301742..1302917	-	391	38233879	-	DIP1294	-	hypothetical protein
1238	 48.55	-1	1302920..1304299	-	459	38233880	-	DIP1295	-	hypothetical protein
1239	 48.95	-1	1304371..1305087	-	238	38233881	-	DIP1296	-	putative DNA-binding protein
1240	 42.70	-2	1305304..1305666	-	120	38233882	-	DIP1296A	-	hypothetical protein
1241	 48.82	-1	1305862..1307424	+	520	38233883	-	DIP1297	-	hypothetical protein
1242	 45.72	-1	1307491..1308402	+	303	38233884	-	DIP1298	-	ABC transporter ATP-binding protein
1243	 46.74	-1	1308405..1309202	+	265	38233885	-	DIP1299	-	hypothetical protein
1244	 49.73	0	1309283..1310221	+	312	38233886	-	DIP1300	-	hypothetical protein
1245	 47.48	-1	1310339..1311271	-	310	38233887	-	DIP1301	-	protoheme IX farnesyltransferase
1246	 52.31	0	1311649..1313751	+	700	38233888	tkt	DIP1302	-	transketolase
1247	 47.92	-1	1313875..1314957	+	360	38233889	tal	DIP1303	-	transaldolase
1248	 50.55	0	1315019..1316668	+	549	38233890	zwf	DIP1304	-	glucose-6-phosphate 1-dehydrogenase
1249	 51.25	0	1316693..1317652	+	319	38233891	-	DIP1305	-	hypothetical protein
1250	 48.81	-1	1317678..1318394	+	238	38233892	-	DIP1306	-	6-phosphogluconolactonase
1251	 46.15	-1	1318462..1318695	-	77	38233893	secG	DIP1307	-	preprotein translocase subunit SecG
1252	 48.66	-1	1318869..1319651	-	260	38233894	tpiA	DIP1308	-	triosephosphate isomerase
1253	 49.75	0	1319763..1320980	-	405	38233895	pgk	DIP1309	-	phosphoglycerate kinase
1254	 50.25	0	1321111..1322115	-	334	38233896	gap	DIP1310	-	glyceraldehyde-3-phosphate dehydrogenase
1255	 49.24	0	1322488..1323474	-	328	38233897	-	DIP1311	-	hypothetical protein
1256	 50.93	0	1323568..1324539	-	323	38233898	-	DIP1312	-	hypothetical protein
1257	 46.67	-1	1324558..1325457	-	299	38233899	-	DIP1313	-	hypothetical protein
1258	 46.66	-1	1325463..1327526	-	687	38233900	uvrC	DIP1314	-	excinuclease ABC subunit C
1259	 45.10	-1	1327536..1328096	-	186	38233901	-	DIP1315	-	hypothetical protein
1260	 49.15	0	1328235..1328702	-	155	38233902	ribH	DIP1316	-	riboflavin synthase subunit beta
1261	 49.72	0	1328703..1329941	-	412	38233903	ribA	DIP1317	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1262	 46.14	-1	1330056..1330664	-	202	38233904	ribE	DIP1318	-	riboflavin synthase subunit alpha
1263	 47.86	-1	1330722..1331726	-	334	38233905	ribD	DIP1319	-	putative riboflavin biosynthesis protein
1264	 45.48	-1	1331821..1332495	-	224	38233906	rpe	DIP1320	-	ribulose-phosphate 3-epimerase
1265	 49.31	0	1332549..1334006	-	485	38233907	-	DIP1321	-	hypothetical protein
1266	 49.79	0	1334003..1334938	-	311	38233908	fmt	DIP1322	-	methionyl-tRNA formyltransferase
1267	 46.47	-1	1334975..1335484	-	169	38233909	def	DIP1323	-	peptide deformylase
1268	 48.57	-1	1335564..1337591	-	675	38233910	-	DIP1324	-	primosome assembly protein PriA
1269	 50.45	0	1337610..1338842	-	410	38233911	metK	DIP1325	-	S-adenosylmethionine synthetase
1270	 48.67	-1	1338983..1340227	-	414	38233912	dfp	DIP1326	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1271	 50.18	0	1340329..1340607	-	92	38233913	rpoZ	DIP1327	-	DNA-directed RNA polymerase subunit omega
1272	 51.91	0	1340681..1341256	-	191	38233914	gmk	DIP1328	-	guanylate kinase
1273	 54.32	0	1341260..1341583	-	107	38233915	mihF	DIP1329	-	integration host factor
1274	 50.06	0	1341932..1342780	-	282	38233916	pyrF	DIP1330	-	orotidine 5'-phosphate decarboxylase
1275	 49.48	0	1342777..1346133	-	1118	38233917	carB	DIP1331	-	carbamoyl phosphate synthase large subunit
1276	 47.98	-1	1346154..1347293	-	379	38233918	carA	DIP1332	-	carbamoyl phosphate synthase small subunit
1277	 50.71	0	1347449..1348795	-	448	38233919	pyrC	DIP1333	-	dihydroorotase
1278	 49.04	-1	1348820..1349761	-	313	38233920	pyrB	DIP1334	-	aspartate carbamoyltransferase catalytic subunit
1279	 46.77	-1	1349761..1350333	-	190	38233921	pyrR	DIP1335	-	pyrimidine regulatory protein PyrR
1280	 49.78	0	1350598..1351959	+	453	38233922	-	DIP1336	-	hypothetical protein
1281	 42.01	-2	1351965..1352402	+	145	38233923	-	DIP1337	-	hypothetical protein
1282	 43.31	-2	1352402..1352812	+	136	38233924	-	DIP1338	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.