IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1128	 48.54	-1	1177969..1178790	+	273	38233770	-	DIP1180	-	putative cytotoxin/hemolysin
1129	 48.74	-1	1178790..1179743	+	317	38233771	ppnK	DIP1181	-	inorganic polyphosphate/ATP-NAD kinase
1130	 49.66	0	1179859..1181598	+	579	38233772	recN	DIP1182	-	DNA repair protein
1131	 47.24	-1	1181709..1182902	+	397	38233773	-	DIP1183	-	hypothetical protein
1132	 46.06	-1	1182927..1183877	+	316	38233774	-	DIP1184	-	hypothetical protein
1133	 46.64	-1	1183899..1184537	+	212	38233775	-	DIP1185	-	hypothetical protein
1134	 45.41	-1	1184540..1185475	+	311	38233776	xerD	DIP1186	-	site-specific tyrosine recombinase XerD
1135	 48.05	-1	1185667..1186536	+	289	38233777	-	DIP1187	-	putative regulatory protein
1136	 47.37	-1	1186579..1187397	+	272	38233778	-	DIP1188	-	hypothetical protein
1137	 50.99	0	1187512..1188117	+	201	38233779	bioD1	DIP1189	-	dethiobiotin synthetase
1138	 48.50	-1	1188118..1189614	-	498	38233780	-	DIP1190	-	putative peptide transport protein
1139	 48.38	-1	1189692..1190987	+	431	38233781	bioA	DIP1191	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1140	 48.13	-1	1191000..1191668	+	222	38233782	bioD	DIP1192	-	dithiobiotin synthetase
1141	 48.44	-1	1191785..1193359	+	524	38233783	-	DIP1193	-	putative Na+/H+ antiporter
1142	 49.73	0	1193378..1193932	+	184	38233784	-	DIP1194	-	hypothetical protein
1143	 51.24	0	1194036..1195001	+	321	38233785	-	DIP1195	-	putative pseudouridine synthase B
1144	 52.07	0	1195003..1195728	+	241	38233786	cmk	DIP1196	-	cytidylate kinase
1145	 49.15	0	1195725..1197368	+	547	38233787	engA	DIP1197	-	GTP-binding protein EngA
1146	 45.82	-1	1197600..1198985	+	461	38233788	dcuB	DIP1198	-	anaerobic C4-dicarboxylate transporter
1147	 46.57	-1	1199016..1200020	-	334	38233789	-	DIP1199	-	putative methyltransferase
1148	 45.56	-1	1200019..1201269	+	416	38233790	-	DIP1200	-	hypothetical protein
1149	 48.68	-1	1201642..1202019	-	125	38233791	-	DIP1201	-	hypothetical protein
1150	 49.33	0	1202026..1203213	-	395	38233792	-	DIP1202	-	hypothetical protein
1151	 49.06	-1	1203482..1205776	+	764	38233793	secA2	DIP1203	-	preprotein translocase subunit SecA
1152	 54.40	0	1205943..1206374	+	143	38233794	-	DIP1204	-	putative signal transduction protein
1153	 50.44	0	1206545..1207222	+	225	38233795	-	DIP1205	-	merR family regulatory protein
1154	 43.71	-2	1207245..1207832	+	195	38233796	-	DIP1206	-	hypothetical protein
1155	 47.06	-1	1207984..1208544	+	186	38233797	-	DIP1207	-	putative transcriptional regulator
1156	 47.77	-1	1208620..1210032	-	470	38233798	-	DIP1208	-	hypothetical protein
1157	 49.15	0	1210064..1210942	-	292	38233799	-	DIP1209	-	hypothetical protein
1158	 47.58	-1	1210939..1211991	-	350	38233800	-	DIP1210	-	hypothetical protein
1159	 47.81	-1	1211988..1213382	-	464	38233801	-	DIP1211	-	hypothetical protein
1160	 50.92	0	1213407..1214765	-	452	38233802	-	DIP1212	-	putative RNA helicase
1161	 52.30	0	1214868..1216322	-	484	38233803	gnd	DIP1213	-	6-phosphogluconate dehydrogenase
1162	 49.02	-1	1216431..1216889	+	152	38233804	-	DIP1214	-	hypothetical protein
1163	 46.50	-1	1216886..1217986	-	366	38233805	-	DIP1215	-	magnesium/cobalt transporter CorA
1164	 45.24	-1	1217993..1218622	+	209	38233806	-	DIP1216	-	hypothetical protein
1165	 51.94	0	1218699..1220063	-	454	38233807	ndh	DIP1217	-	NADH dehydrogenase
1166	 48.84	-1	1220241..1221536	+	431	38233808	-	DIP1218	-	hypothetical protein
1167	 47.68	-1	1222345..1223313	+	322	38233809	-	DIP1221	-	putative sodium-dependent transport membrane protein
1168	 44.26	-2	1223713..1223895	-	60	38233810	-	DIP1222	-	hypothetical protein
1169	 46.35	-1	1223913..1224611	-	232	38233811	-	DIP1223	-	hypothetical protein
1170	 50.00	0	1224625..1224966	-	113	38233812	-	DIP1224	-	hypothetical protein
1171	 48.72	-1	1225219..1225608	+	129	38233813	-	DIP1225	-	hypothetical protein
1172	 50.50	0	1225684..1226487	-	267	38233814	ppm1	DIP1226	-	putative polyprenol phosphate mannosyl transferase 1
1173	 48.85	-1	1226513..1228072	-	519	38233815	-	DIP1227	-	putative transferase/membrane protein
1174	 50.09	0	1228082..1228612	-	176	38233816	fxsA	DIP1228	-	FxsA
1175	 52.13	0	1228651..1232283	-	1210	38233817	cobN	DIP1229	-	cobaltochelatase
1176	 45.65	-1	1232340..1232477	+	45	38233818	-	DIP1230	-	hypothetical protein
1177	 51.09	0	1232650..1233843	+	397	38233819	-	DIP1231	-	hypothetical protein
1178	 51.31	0	1233840..1234490	+	216	38233820	cobH	DIP1232	-	precorrin-8X methylmutase
1179	 49.30	0	1234487..1235983	+	498	38233821	cobIJ	DIP1233	-	putative bifunctional cobalamin biosynthesis protein
1180	 51.64	0	1236065..1236796	-	243	38233822	cobK	DIP1234	-	cobalt-precorrin-6x reductase
1181	 51.68	0	1236784..1237557	-	257	38233823	cobM	DIP1235	-	precorrin-4 C11-methyltransferase
1182	 52.80	0	1237585..1238832	-	415	38233824	-	DIP1236	-	putative precorrin-6Y C5,15-methyltransferase
1183	 48.89	-1	1238888..1239652	-	254	38233825	-	DIP1237	-	hypothetical protein
1184	 48.25	-1	1239661..1240800	-	379	38233826	-	DIP1238	-	putative dipeptidase
1185	 49.91	0	1240851..1243643	-	930	38233827	-	DIP1239	-	putative helicase
1186	 45.22	-1	1243744..1244214	+	156	38233828	-	DIP1240	-	putative tRNA/rRNA methyltransferase
1187	 48.40	-1	1244300..1245394	-	364	38233829	tatC	DIP1241	-	Sec-independent twin-arginine translocase system protein
1188	 49.06	-1	1245467..1245733	-	88	38233830	tatA	DIP1242	-	twin argininte translocase protein A
1189	 47.29	-1	1245768..1246727	-	319	38233831	-	DIP1243	-	hypothetical protein
1190	 49.08	-1	1246792..1247769	-	325	38233832	-	DIP1244	-	hypothetical protein
1191	 47.36	-1	1247794..1249233	-	479	38233833	-	DIP1245	-	hypothetical protein
1192	 45.13	-1	1249238..1249432	-	64	38233834	-	DIP1246	-	hypothetical protein
1193	 46.43	-1	1249490..1251016	-	508	38233835	-	DIP1247	-	hypothetical protein
1194	 47.97	-1	1251013..1252542	-	509	38233836	-	DIP1248	-	ATPase
1195	 51.37	0	1252639..1253475	-	278	38233837	-	DIP1249	-	hypothetical protein
1196	 47.53	-1	1253482..1254840	-	452	38233838	-	DIP1250	-	putative aminopeptidase 2
1197	 47.64	-1	1254942..1255808	+	288	38233839	-	DIP1251	-	hypothetical protein
1198	 45.56	-1	1255902..1256171	+	89	38233840	-	DIP1252	-	putative virulence-associated protein
1199	 47.91	-1	1256231..1257883	-	550	38233841	fhs	DIP1253	-	formate--tetrahydrofolate ligase
1200	 49.65	0	1258020..1259594	-	524	38233842	aspA	DIP1254	-	aspartate ammonia-lyase
1201	 51.61	0	1259869..1261176	-	435	38233843	dcuA	DIP1255	-	anaerobic C4-dicarboxylate transporter
1202	 47.40	-1	1261537..1262382	-	281	38233844	hisG	DIP1256	-	ATP phosphoribosyltransferase
1203	 46.21	-1	1262464..1262727	-	87	38233845	hisE	DIP1257	-	phosphoribosyl-ATP pyrophosphatase
1204	 45.69	-1	1262746..1263441	-	231	38233846	-	DIP1258	-	putative hydrolase
1205	 48.06	-1	1263485..1267090	-	1201	38233847	metH	DIP1259	-	5-methyltetrahydrofolate--homocysteine methyltransferase
1206	 44.19	-2	1267163..1267558	-	131	38233848	-	DIP1260	-	hypothetical protein
1207	 47.79	-1	1267559..1268803	-	414	38233849	cysS	DIP1261	-	cysteinyl-tRNA synthetase
1208	 47.59	-1	1268849..1269697	-	282	38233850	uppP	DIP1262	-	undecaprenyl pyrophosphate phosphatase
1209	 47.81	-1	1269829..1270878	+	349	38233851	-	DIP1263	-	putative lipoprotein
1210	 50.09	0	1270943..1272034	+	363	38233852	pyrD	DIP1264	-	dihydroorotate dehydrogenase 2
1211	 47.22	-1	1272452..1272991	-	179	38233853	-	DIP1265	-	hypothetical protein
1212	 48.99	-1	1273380..1274759	+	459	38233854	-	DIP1266	-	putative transposase
1213	 48.53	-1	1276058..1276807	-	249	38233855	-	DIP1270	-	putative sulfurtransferase
1214	 47.56	-1	1276921..1277925	-	334	38233856	-	DIP1271	-	arginine/ornithine transport system ATPase
1215	 51.45	0	1278111..1280318	-	735	38233857	sbm	DIP1272	-	methylmalonyl-CoA mutase
1216	 50.39	0	1280321..1282132	-	603	38233858	-	DIP1273	-	putative methylmalonyl-CoA mutase small subunit
1217	 44.59	-1	1282382..1283083	+	233	38233859	-	DIP1274	-	hypothetical protein
1218	 49.74	0	1283144..1283710	+	188	38233860	-	DIP1275	-	putative DNA-binding protein
1219	 47.16	-1	1283795..1284922	-	375	38233861	-	DIP1276	-	hypothetical protein
1220	 46.21	-1	1284919..1285353	-	144	38233862	-	DIP1277	-	hypothetical protein
1221	 46.86	-1	1285420..1286262	-	280	38233863	-	DIP1278	-	hypothetical protein
1222	 49.24	0	1286298..1287083	+	261	38233864	-	DIP1279	-	hypothetical protein
1223	 44.32	-2	1287056..1288165	-	369	38233865	hemH	DIP1280	-	ferrochelatase
1224	 48.57	-1	1288281..1289999	-	572	38233866	-	DIP1281	-	putative invasion protein
1225	 47.55	-1	1290514..1290717	+	67	38233867	-	DIP1282	-	hypothetical protein
1226	 50.34	0	1290749..1293565	+	938	161598674	acnA	DIP1283	-	aconitate hydratase
1227	 49.91	0	1293673..1294245	+	190	38233869	-	DIP1284	-	putative TetR-famlily transcriptional regulator
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.