IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1092	 50.45	0	1127571..1128464	-	297	38233734	-	DIP1144	-	hypothetical protein
1093	 48.98	-1	1128534..1129466	-	310	38233735	-	DIP1145	-	hypothetical protein
1094	 49.15	0	1129828..1132527	+	899	38233736	polA	DIP1146	-	DNA polymerase I
1095	 45.57	-1	1132577..1133344	-	255	38233737	-	DIP1147	-	hypothetical protein
1096	 57.22	0	1133555..1135015	+	486	38233738	rpsA	DIP1148	-	30S ribosomal protein S1
1097	 49.26	0	1135099..1136511	-	470	38233739	-	DIP1149	-	putative transport protein
1098	 51.81	0	1136731..1137558	-	275	38233740	-	DIP1150	-	putative transcription antiterminator
1099	 54.31	0	1137670..1139700	-	676	38233741	ptsG	DIP1151	-	PTS system, glucose-specific IIABC component
1100	 50.08	0	1140082..1140684	+	200	38233742	coaE	DIP1152	-	dephospho-CoA kinase
1101	 48.58	-1	1140904..1142103	+	399	38233743	-	DIP1153	-	putative coenzyme PQQ synthesis related protein
1102	 47.70	-1	1142204..1144249	+	681	38233744	uvrB	DIP1154	-	excinuclease ABC subunit B
1103	 50.34	0	1144478..1144918	+	146	38233745	-	DIP1155	-	putative stress related protein
1104	 49.89	0	1144967..1147279	-	770	38233746	-	DIP1156	-	putative helicase
1105	 48.46	-1	1147403..1148248	-	281	38233747	-	DIP1157	-	hypothetical protein
1106	 51.08	0	1148433..1149080	-	215	38233748	-	DIP1158	-	putative hydrolase
1107	 48.01	-1	1149234..1152095	+	953	38233749	uvrA	DIP1159	-	excinuclease ABC subunit A
1108	 53.17	0	1152383..1152886	+	167	38233750	infC	DIP1160	-	translation initiation factor IF-3
1109	 58.46	+1	1152916..1153110	+	64	38233751	rpmI	DIP1161	-	50S ribosomal protein L35
1110	 54.69	0	1153172..1153555	+	127	38233752	rplT	DIP1162	-	50S ribosomal protein L20
1111	 47.25	-1	1153805..1154350	-	181	38233753	-	DIP1163	-	hypothetical protein
1112	 48.84	-1	1154597..1155415	+	272	38233754	tsnR	DIP1164	-	putative rRNA methyltransferase
1113	 50.47	0	1155546..1156601	+	351	38233755	pheS	DIP1165	-	phenylalanyl-tRNA synthetase subunit alpha
1114	 49.66	0	1156643..1159153	+	836	38233756	pheT	DIP1166	-	phenylalanyl-tRNA synthetase subunit beta
1115	 47.70	-1	1159280..1160323	+	347	38233757	argC	DIP1167	-	N-acetyl-gamma-glutamyl-phosphate reductase
1116	 48.84	-1	1160398..1161558	+	386	38233758	argJ	DIP1168	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1117	 50.48	0	1161595..1162527	+	310	38233759	argB	DIP1169	-	acetylglutamate kinase
1118	 47.50	-1	1162520..1163761	+	413	38233760	argD	DIP1170	-	acetylornithine aminotransferase
1119	 46.98	-1	1163790..1164749	+	319	38233761	argF	DIP1171	-	ornithine carbamoyltransferase
1120	 50.41	0	1164856..1165347	+	163	38233762	argR	DIP1172	-	arginine repressor
1121	 49.58	0	1165505..1166704	+	399	38233763	argG	DIP1173	-	argininosuccinate synthase
1122	 50.21	0	1166704..1168137	+	477	38233764	argH	DIP1174	-	argininosuccinate lyase
1123	 46.95	-1	1168201..1168413	+	70	38233765	-	DIP1175	-	hypothetical protein
1124	 46.95	-1	1168427..1169689	+	420	38233766	tyrS	DIP1176	-	tyrosyl-tRNA synthetase
1125	 50.70	0	1175639..1176715	+	358	38233767	-	DIP1177	-	hypothetical protein
1126	 48.59	-1	1176792..1177748	+	318	38233768	-	DIP1178	-	hypothetical protein
1127	 41.36	-2	1177766..1177927	+	53	38233769	-	DIP1179	-	hypothetical protein
1128	 48.54	-1	1177969..1178790	+	273	38233770	-	DIP1180	-	putative cytotoxin/hemolysin
1129	 48.74	-1	1178790..1179743	+	317	38233771	ppnK	DIP1181	-	inorganic polyphosphate/ATP-NAD kinase
1130	 49.66	0	1179859..1181598	+	579	38233772	recN	DIP1182	-	DNA repair protein
1131	 47.24	-1	1181709..1182902	+	397	38233773	-	DIP1183	-	hypothetical protein
1132	 46.06	-1	1182927..1183877	+	316	38233774	-	DIP1184	-	hypothetical protein
1133	 46.64	-1	1183899..1184537	+	212	38233775	-	DIP1185	-	hypothetical protein
1134	 45.41	-1	1184540..1185475	+	311	38233776	xerD	DIP1186	-	site-specific tyrosine recombinase XerD
1135	 48.05	-1	1185667..1186536	+	289	38233777	-	DIP1187	-	putative regulatory protein
1136	 47.37	-1	1186579..1187397	+	272	38233778	-	DIP1188	-	hypothetical protein
1137	 50.99	0	1187512..1188117	+	201	38233779	bioD1	DIP1189	-	dethiobiotin synthetase
1138	 48.50	-1	1188118..1189614	-	498	38233780	-	DIP1190	-	putative peptide transport protein
1139	 48.38	-1	1189692..1190987	+	431	38233781	bioA	DIP1191	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1140	 48.13	-1	1191000..1191668	+	222	38233782	bioD	DIP1192	-	dithiobiotin synthetase
1141	 48.44	-1	1191785..1193359	+	524	38233783	-	DIP1193	-	putative Na+/H+ antiporter
1142	 49.73	0	1193378..1193932	+	184	38233784	-	DIP1194	-	hypothetical protein
1143	 51.24	0	1194036..1195001	+	321	38233785	-	DIP1195	-	putative pseudouridine synthase B
1144	 52.07	0	1195003..1195728	+	241	38233786	cmk	DIP1196	-	cytidylate kinase
1145	 49.15	0	1195725..1197368	+	547	38233787	engA	DIP1197	-	GTP-binding protein EngA
1146	 45.82	-1	1197600..1198985	+	461	38233788	dcuB	DIP1198	-	anaerobic C4-dicarboxylate transporter
1147	 46.57	-1	1199016..1200020	-	334	38233789	-	DIP1199	-	putative methyltransferase
1148	 45.56	-1	1200019..1201269	+	416	38233790	-	DIP1200	-	hypothetical protein
1149	 48.68	-1	1201642..1202019	-	125	38233791	-	DIP1201	-	hypothetical protein
1150	 49.33	0	1202026..1203213	-	395	38233792	-	DIP1202	-	hypothetical protein
1151	 49.06	-1	1203482..1205776	+	764	38233793	secA2	DIP1203	-	preprotein translocase subunit SecA
1152	 54.40	0	1205943..1206374	+	143	38233794	-	DIP1204	-	putative signal transduction protein
1153	 50.44	0	1206545..1207222	+	225	38233795	-	DIP1205	-	merR family regulatory protein
1154	 43.71	-2	1207245..1207832	+	195	38233796	-	DIP1206	-	hypothetical protein
1155	 47.06	-1	1207984..1208544	+	186	38233797	-	DIP1207	-	putative transcriptional regulator
1156	 47.77	-1	1208620..1210032	-	470	38233798	-	DIP1208	-	hypothetical protein
1157	 49.15	0	1210064..1210942	-	292	38233799	-	DIP1209	-	hypothetical protein
1158	 47.58	-1	1210939..1211991	-	350	38233800	-	DIP1210	-	hypothetical protein
1159	 47.81	-1	1211988..1213382	-	464	38233801	-	DIP1211	-	hypothetical protein
1160	 50.92	0	1213407..1214765	-	452	38233802	-	DIP1212	-	putative RNA helicase
1161	 52.30	0	1214868..1216322	-	484	38233803	gnd	DIP1213	-	6-phosphogluconate dehydrogenase
1162	 49.02	-1	1216431..1216889	+	152	38233804	-	DIP1214	-	hypothetical protein
1163	 46.50	-1	1216886..1217986	-	366	38233805	-	DIP1215	-	magnesium/cobalt transporter CorA
1164	 45.24	-1	1217993..1218622	+	209	38233806	-	DIP1216	-	hypothetical protein
1165	 51.94	0	1218699..1220063	-	454	38233807	ndh	DIP1217	-	NADH dehydrogenase
1166	 48.84	-1	1220241..1221536	+	431	38233808	-	DIP1218	-	hypothetical protein
1167	 47.68	-1	1222345..1223313	+	322	38233809	-	DIP1221	-	putative sodium-dependent transport membrane protein
1168	 44.26	-2	1223713..1223895	-	60	38233810	-	DIP1222	-	hypothetical protein
1169	 46.35	-1	1223913..1224611	-	232	38233811	-	DIP1223	-	hypothetical protein
1170	 50.00	0	1224625..1224966	-	113	38233812	-	DIP1224	-	hypothetical protein
1171	 48.72	-1	1225219..1225608	+	129	38233813	-	DIP1225	-	hypothetical protein
1172	 50.50	0	1225684..1226487	-	267	38233814	ppm1	DIP1226	-	putative polyprenol phosphate mannosyl transferase 1
1173	 48.85	-1	1226513..1228072	-	519	38233815	-	DIP1227	-	putative transferase/membrane protein
1174	 50.09	0	1228082..1228612	-	176	38233816	fxsA	DIP1228	-	FxsA
1175	 52.13	0	1228651..1232283	-	1210	38233817	cobN	DIP1229	-	cobaltochelatase
1176	 45.65	-1	1232340..1232477	+	45	38233818	-	DIP1230	-	hypothetical protein
1177	 51.09	0	1232650..1233843	+	397	38233819	-	DIP1231	-	hypothetical protein
1178	 51.31	0	1233840..1234490	+	216	38233820	cobH	DIP1232	-	precorrin-8X methylmutase
1179	 49.30	0	1234487..1235983	+	498	38233821	cobIJ	DIP1233	-	putative bifunctional cobalamin biosynthesis protein
1180	 51.64	0	1236065..1236796	-	243	38233822	cobK	DIP1234	-	cobalt-precorrin-6x reductase
1181	 51.68	0	1236784..1237557	-	257	38233823	cobM	DIP1235	-	precorrin-4 C11-methyltransferase
1182	 52.80	0	1237585..1238832	-	415	38233824	-	DIP1236	-	putative precorrin-6Y C5,15-methyltransferase
1183	 48.89	-1	1238888..1239652	-	254	38233825	-	DIP1237	-	hypothetical protein
1184	 48.25	-1	1239661..1240800	-	379	38233826	-	DIP1238	-	putative dipeptidase
1185	 49.91	0	1240851..1243643	-	930	38233827	-	DIP1239	-	putative helicase
1186	 45.22	-1	1243744..1244214	+	156	38233828	-	DIP1240	-	putative tRNA/rRNA methyltransferase
1187	 48.40	-1	1244300..1245394	-	364	38233829	tatC	DIP1241	-	Sec-independent twin-arginine translocase system protein
1188	 49.06	-1	1245467..1245733	-	88	38233830	tatA	DIP1242	-	twin argininte translocase protein A
1189	 47.29	-1	1245768..1246727	-	319	38233831	-	DIP1243	-	hypothetical protein
1190	 49.08	-1	1246792..1247769	-	325	38233832	-	DIP1244	-	hypothetical protein
1191	 47.36	-1	1247794..1249233	-	479	38233833	-	DIP1245	-	hypothetical protein
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.