IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1040	 53.64	0	1070298..1071326	+	342	38233682	pfkA	DIP1088	-	6-phosphofructokinase
1041	 52.79	0	1071435..1072940	+	501	38233683	gatB	DIP1089	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1042	 50.82	0	1073046..1074143	+	365	38233684	-	DIP1090	-	putative aldo/keto-reductase family protein
1043	 51.97	0	1074172..1074858	-	228	38233685	lysE	DIP1091	-	lysine exporter protein
1044	 53.63	0	1074929..1075810	+	293	38233686	lysG	DIP1092	-	chromosome replication initiation inhibitor protein
1045	 49.22	0	1075821..1076903	-	360	38233687	-	DIP1093	-	hypothetical protein
1046	 51.93	0	1076975..1077727	+	250	38233688	-	DIP1094	-	hypothetical protein
1047	 51.51	0	1077807..1078934	+	375	38233689	-	DIP1095	-	hypothetical protein
1048	 52.77	0	1079011..1080852	-	613	38233690	ilvD	DIP1096	-	dihydroxy-acid dehydratase
1049	 50.00	0	1081141..1081626	-	161	38233691	-	DIP1097	-	putative low molecular weight protein antigen 6
1050	 51.30	0	1082013..1083971	+	652	38233692	ilvB	DIP1098	-	acetolactate synthase 1 catalytic subunit
1051	 46.48	-1	1083987..1084511	+	174	38233693	ilvH	DIP1099	-	acetolactate synthase 3 regulatory subunit
1052	 51.28	0	1084631..1085644	+	337	38233694	ilvC	DIP1100	-	ketol-acid reductoisomerase
1053	 48.81	-1	1085794..1086717	+	307	38233695	-	DIP1101	-	cation-efflux system integral membrane protein
1054	 51.74	0	1086770..1088578	+	602	38233696	-	DIP1102	-	hypothetical protein
1055	 51.82	0	1088634..1090115	+	493	38233697	-	DIP1103	-	hypothetical protein
1056	 52.38	0	1090278..1091873	+	531	38233698	serA	DIP1104	-	D-3-phosphoglycerate dehydrogenase
1057	 52.06	0	1092016..1093035	+	339	38233699	leuB	DIP1105	-	3-isopropylmalate dehydrogenase
1058	 50.56	0	1094680..1094859	+	59	38233700	-	DIP1110	-	hypothetical protein
1059	 48.05	-1	1094905..1095237	+	110	38233701	-	DIP1111	-	putative integral membrane protein
1060	 49.62	0	1095311..1096108	+	265	38233702	-	DIP1112	-	FAA family hydrolase
1061	 53.02	0	1096131..1096775	+	214	38233703	-	DIP1113	-	hypothetical protein
1062	 54.67	0	1096756..1097889	-	377	38233704	-	DIP1114	-	isochorismate synthase
1063	 52.41	0	1097919..1099412	+	497	38233705	gltX	DIP1115	-	glutamyl-tRNA synthetase
1064	 56.33	0	1099572..1100606	+	344	38233706	-	DIP1116	-	putative exported esterase/hydrolase
1065	 54.95	0	1100963..1101508	-	181	38233707	-	DIP1117	-	TetR family transcriptional regulator
1066	 55.80	0	1101650..1103803	+	717	38233708	-	DIP1118	-	MmpL family integral membrane protein
1067	 53.59	0	1103979..1105439	+	486	38233709	-	DIP1119	-	hypothetical protein
1068	 52.48	0	1105526..1105807	+	93	38233710	-	DIP1120	-	hypothetical protein
1069	 51.11	0	1105862..1105996	+	44	38233711	-	DIP1121	-	hypothetical protein
1070	 53.16	0	1106381..1109089	+	902	38233712	ppc	DIP1122	-	phosphoenolpyruvate carboxylase
1071	 53.85	0	1109099..1109488	-	129	38233713	-	DIP1123	-	hypothetical protein
1072	 57.40	0	1109532..1110524	-	330	38233714	-	DIP1124	-	biotin synthase family transferase
1073	 53.58	0	1110605..1111162	+	185	38233715	-	DIP1125	-	hypothetical protein
1074	 57.85	0	1111173..1111898	-	241	38233716	-	DIP1126	-	IclR family transcriptional regulator
1075	 57.38	0	1111988..1113430	+	480	38233717	leuC	DIP1127	-	isopropylmalate isomerase large subunit
1076	 56.35	0	1113442..1114032	+	196	38233718	leuD	DIP1128	-	isopropylmalate isomerase small subunit
1077	 53.91	0	1114111..1115121	-	336	38233719	-	DIP1129	-	hypothetical protein
1078	 53.31	0	1115316..1116311	+	331	38233720	gpsA	DIP1130	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1079	 52.28	0	1116334..1117431	+	365	38233721	ddl	DIP1131	-	D-alanyl-alanine synthetase A
1080	 54.74	0	1117438..1118376	-	312	38233722	-	DIP1132	-	hypothetical protein
1081	 58.38	0	1118468..1119457	+	329	38233723	thiL	DIP1133	-	thiamine monophosphate kinase
1082	 57.25	0	1119460..1120128	+	222	38233724	ung	DIP1134	-	uracil-DNA glycosylase
1083	 57.24	0	1120294..1121799	+	501	38233725	-	DIP1135	-	putative kinase
1084	 57.02	0	1121804..1123918	+	704	38233726	recG	DIP1136	-	ATP-dependent DNA helicase
1085	 53.60	0	1123946..1124167	+	73	38233727	-	DIP1137	-	putative biotin carboxyl carrier protein
1086	 50.09	0	1124164..1124742	+	192	38233728	-	DIP1138	-	putative DNA methylase
1087	 48.12	-1	1124750..1125229	+	159	38233729	coaD	DIP1139	-	phosphopantetheine adenylyltransferase
1088	 53.46	0	1125316..1125474	+	52	38233730	-	DIP1140	-	hypothetical protein
1089	 56.32	0	1125604..1125777	+	57	38233731	-	DIP1141	-	hypothetical protein
1090	 51.82	0	1125798..1126565	-	255	38233732	atrC	DIP1142	-	ABC transporter ATP-binding protein
1091	 49.74	0	1126569..1127513	-	314	38233733	-	DIP1143	-	ABC transporter
1092	 50.45	0	1127571..1128464	-	297	38233734	-	DIP1144	-	hypothetical protein
1093	 48.98	-1	1128534..1129466	-	310	38233735	-	DIP1145	-	hypothetical protein
1094	 49.15	0	1129828..1132527	+	899	38233736	polA	DIP1146	-	DNA polymerase I
1095	 45.57	-1	1132577..1133344	-	255	38233737	-	DIP1147	-	hypothetical protein
1096	 57.22	0	1133555..1135015	+	486	38233738	rpsA	DIP1148	-	30S ribosomal protein S1
1097	 49.26	0	1135099..1136511	-	470	38233739	-	DIP1149	-	putative transport protein
1098	 51.81	0	1136731..1137558	-	275	38233740	-	DIP1150	-	putative transcription antiterminator
1099	 54.31	0	1137670..1139700	-	676	38233741	ptsG	DIP1151	-	PTS system, glucose-specific IIABC component
1100	 50.08	0	1140082..1140684	+	200	38233742	coaE	DIP1152	-	dephospho-CoA kinase
1101	 48.58	-1	1140904..1142103	+	399	38233743	-	DIP1153	-	putative coenzyme PQQ synthesis related protein
1102	 47.70	-1	1142204..1144249	+	681	38233744	uvrB	DIP1154	-	excinuclease ABC subunit B
1103	 50.34	0	1144478..1144918	+	146	38233745	-	DIP1155	-	putative stress related protein
1104	 49.89	0	1144967..1147279	-	770	38233746	-	DIP1156	-	putative helicase
1105	 48.46	-1	1147403..1148248	-	281	38233747	-	DIP1157	-	hypothetical protein
1106	 51.08	0	1148433..1149080	-	215	38233748	-	DIP1158	-	putative hydrolase
1107	 48.01	-1	1149234..1152095	+	953	38233749	uvrA	DIP1159	-	excinuclease ABC subunit A
1108	 53.17	0	1152383..1152886	+	167	38233750	infC	DIP1160	-	translation initiation factor IF-3
1109	 58.46	+1	1152916..1153110	+	64	38233751	rpmI	DIP1161	-	50S ribosomal protein L35
1110	 54.69	0	1153172..1153555	+	127	38233752	rplT	DIP1162	-	50S ribosomal protein L20
1111	 47.25	-1	1153805..1154350	-	181	38233753	-	DIP1163	-	hypothetical protein
1112	 48.84	-1	1154597..1155415	+	272	38233754	tsnR	DIP1164	-	putative rRNA methyltransferase
1113	 50.47	0	1155546..1156601	+	351	38233755	pheS	DIP1165	-	phenylalanyl-tRNA synthetase subunit alpha
1114	 49.66	0	1156643..1159153	+	836	38233756	pheT	DIP1166	-	phenylalanyl-tRNA synthetase subunit beta
1115	 47.70	-1	1159280..1160323	+	347	38233757	argC	DIP1167	-	N-acetyl-gamma-glutamyl-phosphate reductase
1116	 48.84	-1	1160398..1161558	+	386	38233758	argJ	DIP1168	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1117	 50.48	0	1161595..1162527	+	310	38233759	argB	DIP1169	-	acetylglutamate kinase
1118	 47.50	-1	1162520..1163761	+	413	38233760	argD	DIP1170	-	acetylornithine aminotransferase
1119	 46.98	-1	1163790..1164749	+	319	38233761	argF	DIP1171	-	ornithine carbamoyltransferase
1120	 50.41	0	1164856..1165347	+	163	38233762	argR	DIP1172	-	arginine repressor
1121	 49.58	0	1165505..1166704	+	399	38233763	argG	DIP1173	-	argininosuccinate synthase
1122	 50.21	0	1166704..1168137	+	477	38233764	argH	DIP1174	-	argininosuccinate lyase
1123	 46.95	-1	1168201..1168413	+	70	38233765	-	DIP1175	-	hypothetical protein
1124	 46.95	-1	1168427..1169689	+	420	38233766	tyrS	DIP1176	-	tyrosyl-tRNA synthetase
1125	 50.70	0	1175639..1176715	+	358	38233767	-	DIP1177	-	hypothetical protein
1126	 48.59	-1	1176792..1177748	+	318	38233768	-	DIP1178	-	hypothetical protein
1127	 41.36	-2	1177766..1177927	+	53	38233769	-	DIP1179	-	hypothetical protein
1128	 48.54	-1	1177969..1178790	+	273	38233770	-	DIP1180	-	putative cytotoxin/hemolysin
1129	 48.74	-1	1178790..1179743	+	317	38233771	ppnK	DIP1181	-	inorganic polyphosphate/ATP-NAD kinase
1130	 49.66	0	1179859..1181598	+	579	38233772	recN	DIP1182	-	DNA repair protein
1131	 47.24	-1	1181709..1182902	+	397	38233773	-	DIP1183	-	hypothetical protein
1132	 46.06	-1	1182927..1183877	+	316	38233774	-	DIP1184	-	hypothetical protein
1133	 46.64	-1	1183899..1184537	+	212	38233775	-	DIP1185	-	hypothetical protein
1134	 45.41	-1	1184540..1185475	+	311	38233776	xerD	DIP1186	-	site-specific tyrosine recombinase XerD
1135	 48.05	-1	1185667..1186536	+	289	38233777	-	DIP1187	-	putative regulatory protein
1136	 47.37	-1	1186579..1187397	+	272	38233778	-	DIP1188	-	hypothetical protein
1137	 50.99	0	1187512..1188117	+	201	38233779	bioD1	DIP1189	-	dethiobiotin synthetase
1138	 48.50	-1	1188118..1189614	-	498	38233780	-	DIP1190	-	putative peptide transport protein
1139	 48.38	-1	1189692..1190987	+	431	38233781	bioA	DIP1191	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.