IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
987	 52.33	0	1013777..1015429	+	550	38233629	argS	DIP1034	-	arginyl-tRNA synthetase
988	 52.52	0	1015432..1016760	+	442	38233630	lysA	DIP1035	-	diaminopimelate decarboxylase
989	 52.64	0	1016931..1018277	+	448	38233631	thrA	DIP1036	-	homoserine dehydrogenase
990	 53.61	0	1018282..1019208	+	308	38233632	thrB	DIP1037	-	homoserine kinase
991	 52.80	0	1019270..1021021	-	583	38233633	-	DIP1038	-	acyl-CoA synthetase
992	 53.59	0	1021371..1023434	+	687	38233634	rho	DIP1040	-	transcription termination factor Rho
993	 53.97	0	1023434..1024504	+	356	38233635	prfA	DIP1041	-	peptide chain release factor 1
994	 51.28	0	1024509..1025327	+	272	38233636	-	DIP1042	-	HemK family methytransferase
995	 54.22	0	1025435..1026085	+	216	38233637	-	DIP1043	-	hypothetical protein
996	 52.56	0	1026086..1027255	+	389	38233638	-	DIP1044	-	glycosyl trasferase
997	 51.80	0	1027273..1027716	+	147	38233639	-	DIP1045	-	integral membrane protein
998	 51.91	0	1028202..1028987	+	261	38233640	atpB	DIP1046	-	F0F1 ATP synthase subunit A
999	 55.42	0	1029073..1029312	+	79	38233641	atpE	DIP1047	-	F0F1 ATP synthase subunit C
1000	 55.91	0	1029340..1029906	+	188	38233642	atpF	DIP1048	-	F0F1 ATP synthase subunit B
1001	 57.54	0	1029912..1030733	+	273	38233643	atpH	DIP1049	-	F0F1 ATP synthase subunit delta
1002	 56.84	0	1030794..1032422	+	542	38233644	atpA	DIP1050	-	F0F1 ATP synthase subunit alpha
1003	 54.29	0	1032476..1033453	+	325	38233645	atpG	DIP1051	-	F0F1 ATP synthase subunit gamma
1004	 58.02	0	1033457..1034902	+	481	38233646	atpD	DIP1052	-	F0F1 ATP synthase subunit beta
1005	 56.18	0	1034916..1035287	+	123	38233647	atpC	DIP1053	-	F0F1 ATP synthase subunit epsilon
1006	 48.29	-1	1035514..1035981	+	155	38233648	-	DIP1054	-	hypothetical protein
1007	 49.86	0	1036006..1036695	+	229	38233649	-	DIP1055	-	hypothetical protein
1008	 52.28	0	1036724..1037008	+	94	38233650	-	DIP1056	-	hypothetical protein
1009	 52.94	0	1037086..1037544	-	152	38233651	-	DIP1057	-	putative methylmalonyl-CoA epimerase
1010	 49.54	0	1037621..1037947	+	108	38233652	-	DIP1058	-	hypothetical protein
1011	 50.24	0	1037950..1038771	-	273	38233653	-	DIP1059	-	putative iron-siderophore uptake system ATP-binding component
1012	 56.77	0	1038768..1039727	-	319	38233654	-	DIP1060	-	putative iron-siderophore uptake system transmembrane component
1013	 54.27	0	1039729..1040736	-	335	38233655	-	DIP1061	-	putative iron-siderophore uptake system transmembrane component
1014	 49.14	0	1040784..1041827	+	347	38233656	-	DIP1062	-	putative iron-siderophore uptake system exported solute-binding component
1015	 50.78	0	1041924..1042307	-	127	38233657	-	DIP1063	-	putative integral membrane protein
1016	 52.06	0	1042460..1043356	+	298	38233658	-	DIP1064	-	putative thioredoxin-like protein
1017	 54.34	0	1043761..1045959	-	732	38233659	glgB	DIP1065	-	glycogen branching enzyme
1018	 54.10	0	1046014..1048050	-	678	38233660	-	DIP1066	-	putative alpha-amylase (glucanase)
1019	 53.68	0	1048145..1049014	+	289	38233661	-	DIP1067	-	ABC transporter ATP-binding protein
1020	 53.70	0	1049093..1049902	+	269	38233662	-	DIP1068	-	NUDIX/MutT family hydrolase
1021	 53.16	0	1049947..1051131	+	394	38233663	-	DIP1069	-	hypothetical protein
1022	 51.07	0	1051307..1052101	+	264	38233664	etfB	DIP1070	-	electron transfer flavoprotein subunit beta
1023	 53.98	0	1052119..1053072	+	317	38233665	etfA	DIP1071	-	electron transfer flavoprotein subunit alpha
1024	 54.09	0	1053532..1054668	+	378	38233666	-	DIP1072	-	putative aminotransferase, class V
1025	 52.30	0	1054665..1055513	-	282	38233667	-	DIP1073	-	putative transferase
1026	 52.41	0	1055670..1056770	+	366	38233668	trmU	DIP1074	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1027	 54.96	0	1056799..1057866	+	355	38233669	-	DIP1075	-	hypothetical protein
1028	 47.94	-1	1057910..1058614	-	234	38233670	-	DIP1076	-	DNA polymerase III subunit epsilon
1029	 51.47	0	1058711..1060744	+	677	38233671	ligA	DIP1077	-	NAD-dependent DNA ligase LigA
1030	 53.24	0	1060807..1061469	-	220	38233672	-	DIP1078	-	hypothetical protein
1031	 54.67	0	1061719..1062018	+	99	38233673	gatC	DIP1079	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1032	 53.13	0	1062018..1063502	+	494	38233674	gatA	DIP1080	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1033	 48.78	-1	1063604..1064095	-	163	38233675	-	DIP1081	-	putative acetyltransferase
1034	 49.79	0	1064159..1065574	+	471	38233676	-	DIP1082	-	major facilitator family transmembrane efflux protein
1035	 56.25	0	1065633..1065968	-	111	38233677	-	DIP1083	-	hypothetical protein
1036	 51.78	0	1066370..1067410	+	346	38233678	-	DIP1084	-	iron ABC transporter membrane protein
1037	 51.75	0	1067410..1068207	+	265	38233679	-	DIP1085	-	putative iron ABC transport system, ATP-binding protein
1038	 48.26	-1	1068219..1069283	+	354	38233680	-	DIP1086	-	putative iron transport system exported solute-binding component
1039	 46.61	-1	1069391..1070098	+	235	38233681	-	DIP1087	-	integral membrane protein
1040	 53.64	0	1070298..1071326	+	342	38233682	pfkA	DIP1088	-	6-phosphofructokinase
1041	 52.79	0	1071435..1072940	+	501	38233683	gatB	DIP1089	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1042	 50.82	0	1073046..1074143	+	365	38233684	-	DIP1090	-	putative aldo/keto-reductase family protein
1043	 51.97	0	1074172..1074858	-	228	38233685	lysE	DIP1091	-	lysine exporter protein
1044	 53.63	0	1074929..1075810	+	293	38233686	lysG	DIP1092	-	chromosome replication initiation inhibitor protein
1045	 49.22	0	1075821..1076903	-	360	38233687	-	DIP1093	-	hypothetical protein
1046	 51.93	0	1076975..1077727	+	250	38233688	-	DIP1094	-	hypothetical protein
1047	 51.51	0	1077807..1078934	+	375	38233689	-	DIP1095	-	hypothetical protein
1048	 52.77	0	1079011..1080852	-	613	38233690	ilvD	DIP1096	-	dihydroxy-acid dehydratase
1049	 50.00	0	1081141..1081626	-	161	38233691	-	DIP1097	-	putative low molecular weight protein antigen 6
1050	 51.30	0	1082013..1083971	+	652	38233692	ilvB	DIP1098	-	acetolactate synthase 1 catalytic subunit
1051	 46.48	-1	1083987..1084511	+	174	38233693	ilvH	DIP1099	-	acetolactate synthase 3 regulatory subunit
1052	 51.28	0	1084631..1085644	+	337	38233694	ilvC	DIP1100	-	ketol-acid reductoisomerase
1053	 48.81	-1	1085794..1086717	+	307	38233695	-	DIP1101	-	cation-efflux system integral membrane protein
1054	 51.74	0	1086770..1088578	+	602	38233696	-	DIP1102	-	hypothetical protein
1055	 51.82	0	1088634..1090115	+	493	38233697	-	DIP1103	-	hypothetical protein
1056	 52.38	0	1090278..1091873	+	531	38233698	serA	DIP1104	-	D-3-phosphoglycerate dehydrogenase
1057	 52.06	0	1092016..1093035	+	339	38233699	leuB	DIP1105	-	3-isopropylmalate dehydrogenase
1058	 50.56	0	1094680..1094859	+	59	38233700	-	DIP1110	-	hypothetical protein
1059	 48.05	-1	1094905..1095237	+	110	38233701	-	DIP1111	-	putative integral membrane protein
1060	 49.62	0	1095311..1096108	+	265	38233702	-	DIP1112	-	FAA family hydrolase
1061	 53.02	0	1096131..1096775	+	214	38233703	-	DIP1113	-	hypothetical protein
1062	 54.67	0	1096756..1097889	-	377	38233704	-	DIP1114	-	isochorismate synthase
1063	 52.41	0	1097919..1099412	+	497	38233705	gltX	DIP1115	-	glutamyl-tRNA synthetase
1064	 56.33	0	1099572..1100606	+	344	38233706	-	DIP1116	-	putative exported esterase/hydrolase
1065	 54.95	0	1100963..1101508	-	181	38233707	-	DIP1117	-	TetR family transcriptional regulator
1066	 55.80	0	1101650..1103803	+	717	38233708	-	DIP1118	-	MmpL family integral membrane protein
1067	 53.59	0	1103979..1105439	+	486	38233709	-	DIP1119	-	hypothetical protein
1068	 52.48	0	1105526..1105807	+	93	38233710	-	DIP1120	-	hypothetical protein
1069	 51.11	0	1105862..1105996	+	44	38233711	-	DIP1121	-	hypothetical protein
1070	 53.16	0	1106381..1109089	+	902	38233712	ppc	DIP1122	-	phosphoenolpyruvate carboxylase
1071	 53.85	0	1109099..1109488	-	129	38233713	-	DIP1123	-	hypothetical protein
1072	 57.40	0	1109532..1110524	-	330	38233714	-	DIP1124	-	biotin synthase family transferase
1073	 53.58	0	1110605..1111162	+	185	38233715	-	DIP1125	-	hypothetical protein
1074	 57.85	0	1111173..1111898	-	241	38233716	-	DIP1126	-	IclR family transcriptional regulator
1075	 57.38	0	1111988..1113430	+	480	38233717	leuC	DIP1127	-	isopropylmalate isomerase large subunit
1076	 56.35	0	1113442..1114032	+	196	38233718	leuD	DIP1128	-	isopropylmalate isomerase small subunit
1077	 53.91	0	1114111..1115121	-	336	38233719	-	DIP1129	-	hypothetical protein
1078	 53.31	0	1115316..1116311	+	331	38233720	gpsA	DIP1130	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1079	 52.28	0	1116334..1117431	+	365	38233721	ddl	DIP1131	-	D-alanyl-alanine synthetase A
1080	 54.74	0	1117438..1118376	-	312	38233722	-	DIP1132	-	hypothetical protein
1081	 58.38	0	1118468..1119457	+	329	38233723	thiL	DIP1133	-	thiamine monophosphate kinase
1082	 57.25	0	1119460..1120128	+	222	38233724	ung	DIP1134	-	uracil-DNA glycosylase
1083	 57.24	0	1120294..1121799	+	501	38233725	-	DIP1135	-	putative kinase
1084	 57.02	0	1121804..1123918	+	704	38233726	recG	DIP1136	-	ATP-dependent DNA helicase
1085	 53.60	0	1123946..1124167	+	73	38233727	-	DIP1137	-	putative biotin carboxyl carrier protein
1086	 50.09	0	1124164..1124742	+	192	38233728	-	DIP1138	-	putative DNA methylase
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.