IslandPath Analysis: Clostridium perfringens SM101



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.86   STD DEV: 2.94
Clostridium phage phiSM101, complete genome - 1..38092
53 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 24.15	0	4633..5013	-	126	110804056	-	CPR_C0001	-	hypothetical protein
2	 27.89	0	5087..5380	-	97	110804063	-	CPR_C0002	-	hypothetical protein
3	 22.79	-1	5402..6103	-	233	110804045	-	CPR_C0003	-	hypothetical protein
4	 32.46	+1	6108..9644	-	1178	110804068	-	CPR_C0004	-	phage tail tape measure protein, TP901 family, core region domain protein
5	 26.47	0	9663..9866	-	67	110804072	-	CPR_C0005	-	hypothetical protein
6	 28.53	0	9869..10243	-	124	110804055	-	CPR_C0006	-	hypothetical protein
7	 31.12	+1	10263..10895	-	210	110804026	-	CPR_C0007	-	phage major tail protein, phi13 family subfamily
8	 29.44	0	11267..11626	-	119	110804042	-	CPR_C0008	-	phage protein, HK97 gp10 family
9	 26.15	0	11687..12034	-	115	110804035	-	CPR_C0009	-	uncharacterized membrane protein
10	 24.56	0	12080..12421	-	113	110804032	-	CPR_C0010	-	phage head-tail adaptor, putative
11	 25.00	0	12421..12720	-	99	110804046	-	CPR_C0011	-	uncharacterized phage protein (possible DNA packaging)
12	 27.74	0	12738..13952	-	404	110804052	-	CPR_C0012	-	phage major capsid protein, HK97 family
13	 29.23	0	13953..14684	-	243	110804048	clpP	CPR_C0013	-	Clp protease domain protein
14	 26.75	0	14684..15913	-	409	110804051	-	CPR_C0014	-	phage portal protein, HK97 family
15	 29.73	0	16105..17850	-	581	110804033	-	CPR_C0015	-	phage terminase, large subunit, putative
16	 27.78	0	17858..18379	-	173	110804034	-	CPR_C0016	-	phage terminase, small subunit, putative, P27 family, putative
17	 30.11	+1	18483..18917	-	144	110804050	-	CPR_C0017	-	HNH endonuclease domain protein
18	 26.15	0	18910..19104	-	64	110804039	-	CPR_C0018	-	hypothetical protein
19	 22.96	-1	19310..19444	-	44	110804064	-	CPR_C0019	-	hypothetical protein
20	 29.22	0	19910..20371	-	153	110804038	-	CPR_C0021	-	probable sigma factor
21	 22.44	-1	20398..20700	-	100	110804065	-	CPR_C0022	-	hypothetical protein
22	 25.71	0	20817..21026	-	69	110804027	-	CPR_C0023	-	hypothetical protein
23	 27.78	0	21019..21342	-	107	110804047	-	CPR_C0024	-	hypothetical protein
24	 29.67	0	21381..21653	-	90	110804031	-	CPR_C0025	-	hypothetical protein
25	 27.42	0	21658..21843	-	61	110804069	-	CPR_C0026	-	hypothetical protein
26	 30.38	+1	21903..22919	-	338	110804066	-	CPR_C0027	-	hypothetical protein
27	 26.92	0	22926..23081	-	51	110804054	-	CPR_C0028	-	hypothetical protein
28	 28.30	0	23090..23248	-	52	110804029	-	CPR_C0029	-	hypothetical protein
29	 26.09	0	23261..23536	-	91	110804058	-	CPR_C0030	-	transcription regulator (MarR family)-like protein lmo1850
30	 27.82	0	23589..24332	-	247	110804073	-	CPR_C0031	-	hypothetical protein
31	 27.83	0	24519..24863	-	114	110804067	-	CPR_C0032	-	hypothetical protein
32	 27.74	0	24860..25252	-	130	110804041	-	CPR_C0033	-	hypothetical protein
33	 29.61	0	25252..25923	-	223	110804043	-	CPR_C0034	-	hypothetical protein
34	 30.91	+1	25932..26096	-	54	110804025	-	CPR_C0035	-	hypothetical protein
35	 22.42	-1	26228..26392	-	54	110804023	-	CPR_C0036	-	hypothetical protein
36	 31.37	+1	26412..26564	-	50	110804049	-	CPR_C0037	-	hypothetical protein
37	 31.40	+1	26793..27155	+	120	110804036	-	CPR_C0038	-	Helix-turn-helix domain protein
38	 19.17	-2	27166..27285	-	39	110804044	-	CPR_C0039	-	hypothetical protein
39	 25.33	0	27748..28572	-	274	110804037	-	CPR_C0040	-	hypothetical protein
40	 26.60	0	29010..29855	+	281	110804060	-	CPR_C0041	-	probable ATPase of HSP70 class, putative
41	 21.81	-1	29856..30098	+	80	110804040	-	CPR_C0042	-	hypothetical protein
42	 26.87	0	30385..30585	+	66	110804070	-	CPR_C0043	-	hypothetical protein
43	 23.67	-1	30600..30806	+	68	110804062	-	CPR_C0044	-	hypothetical protein
44	 26.42	0	30922..31326	+	134	110804024	-	CPR_C0045	-	hypothetical protein
45	 25.67	0	31539..31799	+	86	110804022	-	CPR_C0046	-	hypothetical protein
46	 23.96	0	31861..32052	+	63	110804028	-	CPR_C0047	-	hypothetical protein
47	 27.78	0	32135..32548	+	137	110804021	-	CPR_C0048	-	hypothetical protein
48	 21.84	-1	32562..32822	+	86	110804059	-	CPR_C0049	-	hypothetical protein
49	 29.74	0	32949..33977	-	342	110804057	-	CPR_C0050	-	autolytic lysozyme
50	 27.95	0	34003..34782	-	259	110804053	-	CPR_C0051	-	modification methylase dpniia, putative
51	 28.60	0	34873..35358	-	161	110804061	-	CPR_C0052	-	hypothetical protein
52	 23.08	-1	35379..35612	-	77	110804030	-	CPR_C0053	-	hypothetical protein
53	 22.89	-1	35630..35878	-	82	110804071	-	CPR_C0054	-	hypothetical protein
26.86	MEAN

2.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.