IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
929	 35.20	+1	1127780..1129444	+	554	18309911	-	CPE0929	-	coenzyme B12-dependent glycerol dehydrogenase large subunit
930	 31.41	0	1129452..1130024	+	190	18309912	-	CPE0930	-	coenzyme B12-dependent glycerol dehydrogenase medium subunit
931	 31.22	0	1130044..1130469	+	141	18309913	-	CPE0931	-	coenzyme B12-dependent glycerol dehydrogenase small subunit
932	 33.33	+1	1130486..1132336	+	616	18309914	-	CPE0932	-	glycerol dehydratase reactivation factor, large subunit
933	 28.49	0	1132329..1132679	+	116	18309915	-	CPE0933	-	glycerol dehydratase reactivation factor, small subunit
934	 30.60	0	1132698..1133210	+	170	18309916	-	CPE0934	-	hypothetical protein
935	 33.80	+1	1133234..1133662	+	142	18309917	-	CPE0935	-	hypothetical protein
936	 35.66	+1	1133756..1134913	+	385	18309918	-	CPE0936	-	1,3-propanediol dehydrogenase
937	 30.95	0	1135498..1136967	+	489	18309919	-	CPE0937	-	amino acid permease family protein
938	 22.67	-1	1137256..1137930	+	224	18309920	-	CPE0938	-	hypothetical protein
939	 29.04	0	1138271..1138783	+	170	18309921	-	CPE0939	-	GNAT family acetyltransferase
940	 31.26	0	1138851..1139621	-	256	18309922	-	CPE0940	-	hypothetical protein
941	 21.61	-2	1139727..1140545	-	272	18309923	-	CPE0941	-	hypothetical protein
942	 25.00	-1	1140656..1141015	-	119	18309924	-	CPE0942	-	hypothetical protein
943	 26.09	0	1141047..1141391	-	114	18309925	-	CPE0943	-	hypothetical protein
944	 27.78	0	1141575..1142564	+	329	18309926	pldB	CPE0944	-	lysophospholipase
945	 26.33	0	1142621..1143277	-	218	18309927	-	CPE0945	-	hypothetical protein
946	 24.26	-1	1143533..1144414	-	293	18309928	-	CPE0946	-	hypothetical protein
947	 29.89	0	1145169..1146476	+	435	18309929	-	CPE0947	-	transmembrane symporter
948	 27.10	0	1146821..1147510	+	229	18309930	-	CPE0948	-	DNA-binding response regulator
949	 27.47	0	1147720..1148640	+	306	18309931	-	CPE0949	-	ABC transporter
950	 23.51	-1	1148633..1149385	+	250	18309932	-	CPE0950	-	hypothetical protein
951	 26.16	0	1149399..1150304	+	301	18309933	-	CPE0951	-	sensor histidine kinase
952	 24.12	-1	1150404..1150631	-	75	18309934	-	CPE0952	-	hypothetical protein
953	 29.62	0	1150930..1152141	+	403	18309935	-	CPE0953	-	pyridine nucleotide-disulphide oxidoreductase family protein
954	 29.98	0	1152358..1152894	+	178	18309936	gpo	CPE0954	-	glutathione peroxidase
955	 41.96	+2	1153011..1154204	-	397	18309937	clg	CPE0955	-	collagen triple helix repeat protein
956	 22.84	-1	1154306..1154896	-	196	18309938	-	CPE0956	-	putative metal-dependent hydrolase, membrane-bound
957	 21.00	-2	1155088..1155306	-	72	18309939	-	CPE0957	-	hypothetical protein
958	 27.32	0	1155516..1156130	+	204	18309940	mutT	CPE0958	-	mutator MutT protein
959	 28.85	0	1156225..1156380	-	51	18309941	-	CPE0959	-	hypothetical protein
960	 23.05	-1	1156509..1157150	+	213	18309942	-	CPE0960	-	hypothetical protein
961	 24.31	-1	1157357..1157788	+	143	18309943	-	CPE0961	-	MarR family transcriptional regulator
962	 26.35	0	1158113..1159072	+	319	18309944	-	CPE0962	-	hypothetical protein
963	 29.88	0	1159176..1160798	-	540	18309945	-	CPE0963	-	transporter
964	 23.39	-1	1161203..1161373	+	56	18309946	-	CPE0964	-	hypothetical protein
965	 21.61	-2	1161697..1163334	-	545	18309947	-	CPE0965	-	GGDEF domain protein
966	 27.50	0	1163773..1164252	+	159	18309948	-	CPE0966	-	hypothetical protein
967	 30.67	0	1164789..1165952	+	387	18309949	-	CPE0967	-	glutamate/ aspartate transporter
968	 21.29	-2	1166285..1167280	+	331	18309950	-	CPE0968	-	hypothetical protein
969	 24.80	-1	1167573..1169483	+	636	18309951	-	CPE0969	-	hypothetical protein
970	 30.10	0	1169513..1170967	-	484	18309952	-	CPE0970	-	Na+/H+ antiporter
971	 22.71	-1	1170996..1171616	-	206	18309953	-	CPE0971	-	hypothetical protein
972	 29.52	0	1171854..1172639	+	261	18309954	hisB	CPE0972	-	histidinol phosphatase
973	 28.07	0	1172822..1172992	-	56	18309955	-	CPE0973	-	hypothetical protein
974	 27.65	0	1173309..1174328	-	339	18309956	-	CPE0974	-	hypothetical protein
975	 30.60	0	1174529..1176469	+	646	18309957	-	CPE0975	-	tetracycline resistant protein
976	 23.16	-1	1176634..1176987	+	117	18309958	-	CPE0976	-	hypothetical protein
977	 27.55	0	1177094..1178044	-	316	18309959	-	CPE0977	-	hypothetical protein
978	 29.56	0	1178435..1179097	-	220	18309960	-	CPE0978	-	hypothetical protein
979	 29.24	0	1179675..1180187	-	170	18309961	-	CPE0979	-	ferritin family protein
980	 22.59	-1	1180337..1181155	-	272	18309962	-	CPE0980	-	transcriptional regulator
981	 29.24	0	1181316..1183148	+	610	18309963	-	CPE0981	-	glycosyl hydrolase, family 20
982	 32.26	0	1183266..1183733	+	155	18309964	-	CPE0982	-	hypothetical protein
983	 32.18	0	1183854..1184630	-	258	18309965	-	CPE0983	-	hypothetical protein
984	 30.73	0	1184746..1186167	-	473	18309966	spoVAF	CPE0984	-	stage V sporulation protein AF
985	 31.21	0	1186397..1187905	-	502	18309967	-	CPE0985	-	hypothetical protein
986	 25.32	-1	1188307..1190178	+	623	18309968	-	CPE0986	-	two-component sensor histidine kinase
987	 32.87	+1	1190402..1191469	+	355	18309969	pfoS	CPE0987	-	regulatory protein
988	 32.60	+1	1191501..1192181	+	226	18309970	sdhB	CPE0988	-	L-serine dehydratase beta subunit
989	 35.95	+1	1192185..1193063	+	292	18309971	sdhA	CPE0989	-	L-serine dehydratase alpha subunit
990	 29.12	0	1193131..1193865	-	244	18309972	-	CPE0990	-	hypothetical protein
991	 28.25	0	1194072..1194818	+	248	18309973	truA	CPE0991	-	tRNA pseudouridine synthase A
992	 31.27	0	1194885..1195952	-	355	18309974	-	CPE0992	-	oxidoreductase, 2-nitropropane dioxygenase family
993	 28.83	0	1196153..1196863	+	236	18309975	-	CPE0993	-	transcriptional regulator
994	 28.07	0	1196919..1197830	-	303	18309976	-	CPE0994	-	radical SAM domain protein
995	 32.08	0	1197974..1199008	+	344	18309977	-	CPE0995	-	glucanase
996	 25.89	0	1199327..1199998	+	223	18309978	-	CPE0996	-	hypothetical protein
997	 25.65	-1	1200014..1201693	+	559	18309979	-	CPE0997	-	hypothetical protein
998	 31.08	0	1202355..1203995	+	546	18309980	gltX	CPE0998	-	glutamyl-tRNA synthetase
999	 34.62	+1	1204190..1204345	+	51	18309981	-	CPE0999	-	hypothetical protein
1000	 27.48	0	1204572..1205186	+	204	18309982	-	CPE1000	-	hypothetical protein
1001	 30.81	0	1205280..1206902	-	540	18309983	-	CPE1001	-	aspartate aminotransferase
1002	 23.17	-1	1207034..1208056	-	340	18309984	-	CPE1002	-	hypothetical protein
1003	 25.56	-1	1208361..1208540	+	59	18309985	-	CPE1003	-	hypothetical protein
1004	 30.84	0	1208552..1209475	+	307	18309986	hprK	CPE1004	-	HPr kinase/phosphorylase
1005	 24.19	-1	1209520..1210449	+	309	18309987	-	CPE1005	-	divalent cation transporter
1006	 31.27	0	1210516..1211922	+	468	18309988	-	CPE1006	-	putative aminopeptidase 1
1007	 21.26	-2	1212047..1212634	+	195	18309989	-	CPE1007	-	hypothetical protein
1008	 24.88	-1	1212707..1213570	+	287	18309990	-	CPE1008	-	hypothetical protein
1009	 34.44	+1	1213738..1214097	+	119	18309991	mgsA	CPE1009	-	methylglyoxal synthase
1010	 22.92	-1	1214278..1214613	+	111	18309992	-	CPE1010	-	hypothetical protein
1011	 28.35	0	1214739..1214999	+	86	18309993	-	CPE1011	-	hypothetical protein
1012	 31.50	0	1215083..1215463	+	126	18309994	-	CPE1012	-	putative endoribonuclease L-PSP
1013	 30.89	0	1215507..1215752	+	81	18309995	-	CPE1013	-	hypothetical protein
1014	 30.00	0	1215859..1218495	-	878	18309996	-	CPE1014	-	rubredoxin/flavodoxin/oxidoreductase
1015	 29.66	0	1218700..1219542	-	280	18309997	-	CPE1015	-	hypothetical protein
1016	 29.44	0	1219810..1220400	+	196	18309998	pabA	CPE1016	-	anthranilate synthase component II
1017	 27.32	0	1220406..1221752	+	448	18309999	pabB	CPE1017	-	para-aminobenzoate synthase, component I
1018	 26.53	0	1221806..1222540	+	244	18310000	-	CPE1018	-	4-amino-4-deoxychorismate lyase
1019	 32.26	0	1222555..1223112	+	185	18310001	folE	CPE1019	-	GTP cyclohydrolase I
1020	 26.37	0	1223137..1223610	+	157	18310002	-	CPE1020	-	hypothetical protein
1021	 32.72	+1	1223623..1224432	+	269	18310003	folP	CPE1021	-	dihydropteroate synthase
1022	 28.10	0	1224445..1225266	+	273	18310004	folA/folK	CPE1022	-	dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1023	 22.29	-1	1225337..1225807	-	156	18310005	-	CPE1023	-	hypothetical protein
1024	 22.22	-1	1225922..1226362	+	146	18310006	-	CPE1024	-	hypothetical protein
1025	 26.48	0	1226692..1227786	+	364	18310007	pykA	CPE1025	-	pyruvate kinase
1026	 26.52	0	1227783..1228340	-	185	18310008	-	CPE1026	-	hypothetical protein
1027	 27.69	0	1228514..1229965	+	483	18310009	-	CPE1027	-	hypothetical protein
1028	 26.32	0	1229962..1230303	-	113	18310010	-	CPE1028	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.