IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
889	 26.19	0	1092507..1092926	+	139	18309871	-	CPE0889	-	hypothetical protein
890	 35.29	+1	1093292..1093546	+	84	18309872	-	CPE0890	-	hypothetical protein
891	 24.78	-1	1093462..1093917	+	151	18309873	-	CPE0891	-	hypothetical protein
892	 29.89	0	1094185..1095315	+	376	18309874	-	CPE0892	-	NADPH-dependent butanol dehydrogenase
893	 33.62	+1	1095669..1096019	+	116	18309875	pduU	CPE0893	-	propanediol utilization protein
894	 30.57	0	1096023..1096457	+	144	18309876	pduV	CPE0894	-	propanediol utilization protein
895	 29.69	0	1096475..1097050	+	191	18309877	-	CPE0895	-	two-component response regulator
896	 27.24	0	1097054..1098481	+	475	18309878	-	CPE0896	-	two-component sensor histidine kinase
897	 31.94	0	1098691..1100124	+	477	18309879	eutA	CPE0897	-	reactivating factor for ethanolamine ammonia lyase
898	 34.36	+1	1100143..1101510	+	455	18309880	eutB	CPE0898	-	ethanolamine ammonia lyase heavy chain
899	 34.35	+1	1101527..1102414	+	295	18309881	eutC	CPE0899	-	ethanolamine ammonia-lyase small subunit
900	 36.54	+2	1102436..1103089	+	217	18309882	eutL	CPE0900	-	ethanolamine utilization protein
901	 29.90	0	1103102..1103887	+	261	18309883	pduJ	CPE0901	-	propanediol utilization protein
902	 34.96	+1	1103887..1105365	+	492	18309884	adhE	CPE0902	-	alcohol dehydrogenase
903	 41.58	+2	1105721..1106011	+	96	18309885	pduJ	CPE0903	-	propanediol utilization protein
904	 30.88	0	1106050..1106865	+	271	18309886	eutT	CPE0904	-	ethanolamine utilization cobalamin adenosyltransferase
905	 33.65	+1	1106875..1107510	+	211	18309887	pduL	CPE0905	-	propanediol utilization protein
906	 29.64	0	1107716..1108474	+	252	18309888	-	CPE0906	-	hypothetical protein
907	 35.53	+1	1108622..1108894	+	90	18309889	eutN	CPE0907	-	ethanolamine utilization protein
908	 30.45	0	1108896..1109450	+	184	18309890	pduT	CPE0908	-	propanediol utilization protein
909	 34.70	+1	1109501..1110598	+	365	18309891	eutH	CPE0909	-	ethanolamine utilization protein
910	 31.01	0	1110601..1111074	+	157	18309892	eutQ	CPE0910	-	ethanolamine utilization protein
911	 28.30	0	1111442..1111918	+	158	18309893	bsaA	CPE0911	-	glutathione peroxidase
912	 26.56	0	1112351..1112896	+	181	18309894	-	CPE0912	-	hypothetical protein
913	 27.24	0	1113188..1113499	+	103	18309895	-	CPE0913	-	hypothetical protein
914	 23.95	-1	1113813..1115453	+	546	18309896	-	CPE0914	-	hypothetical protein
915	 34.30	+1	1115535..1116155	+	206	18309897	-	CPE0915	-	NADPH-dependent FMN reductase
916	 31.22	0	1116597..1117022	+	141	18309898	-	CPE0916	-	hypothetical protein
917	 29.30	0	1117404..1119164	+	586	18309899	nrdD	CPE0917	-	anaerobic ribonucleoside triphosphate reductase
918	 29.14	0	1119215..1119619	+	134	18309900	-	CPE0918	-	hypothetical protein
919	 25.03	-1	1119814..1120536	+	240	18309901	-	CPE0919	-	hypothetical protein
920	 17.81	-2	1120741..1120959	-	72	18309902	-	CPE0920	-	hypothetical protein
921	 27.62	0	1121179..1121721	+	180	18309903	-	CPE0921	-	nitroreductase family protein
922	 25.52	-1	1122001..1122627	+	208	18309904	-	CPE0922	-	hypothetical protein
923	 28.02	0	1122654..1123067	+	137	18309905	-	CPE0923	-	hypothetical protein
924	 26.35	0	1123136..1123966	+	276	18309906	-	CPE0924	-	metallo-beta-lactamase family protein
925	 19.21	-2	1124142..1124318	+	58	18309907	-	CPE0925	-	hypothetical protein
926	 32.20	0	1124547..1125251	+	234	18309908	glpF	CPE0926	-	glycerol uptake facilitator protein
927	 28.87	0	1125438..1126670	+	410	18309909	-	CPE0927	-	sensor histidine kinase
928	 27.62	0	1126690..1127442	+	250	18309910	-	CPE0928	-	two-component response regulator
929	 35.20	+1	1127780..1129444	+	554	18309911	-	CPE0929	-	coenzyme B12-dependent glycerol dehydrogenase large subunit
930	 31.41	0	1129452..1130024	+	190	18309912	-	CPE0930	-	coenzyme B12-dependent glycerol dehydrogenase medium subunit
931	 31.22	0	1130044..1130469	+	141	18309913	-	CPE0931	-	coenzyme B12-dependent glycerol dehydrogenase small subunit
932	 33.33	+1	1130486..1132336	+	616	18309914	-	CPE0932	-	glycerol dehydratase reactivation factor, large subunit
933	 28.49	0	1132329..1132679	+	116	18309915	-	CPE0933	-	glycerol dehydratase reactivation factor, small subunit
934	 30.60	0	1132698..1133210	+	170	18309916	-	CPE0934	-	hypothetical protein
935	 33.80	+1	1133234..1133662	+	142	18309917	-	CPE0935	-	hypothetical protein
936	 35.66	+1	1133756..1134913	+	385	18309918	-	CPE0936	-	1,3-propanediol dehydrogenase
937	 30.95	0	1135498..1136967	+	489	18309919	-	CPE0937	-	amino acid permease family protein
938	 22.67	-1	1137256..1137930	+	224	18309920	-	CPE0938	-	hypothetical protein
939	 29.04	0	1138271..1138783	+	170	18309921	-	CPE0939	-	GNAT family acetyltransferase
940	 31.26	0	1138851..1139621	-	256	18309922	-	CPE0940	-	hypothetical protein
941	 21.61	-2	1139727..1140545	-	272	18309923	-	CPE0941	-	hypothetical protein
942	 25.00	-1	1140656..1141015	-	119	18309924	-	CPE0942	-	hypothetical protein
943	 26.09	0	1141047..1141391	-	114	18309925	-	CPE0943	-	hypothetical protein
944	 27.78	0	1141575..1142564	+	329	18309926	pldB	CPE0944	-	lysophospholipase
945	 26.33	0	1142621..1143277	-	218	18309927	-	CPE0945	-	hypothetical protein
946	 24.26	-1	1143533..1144414	-	293	18309928	-	CPE0946	-	hypothetical protein
947	 29.89	0	1145169..1146476	+	435	18309929	-	CPE0947	-	transmembrane symporter
948	 27.10	0	1146821..1147510	+	229	18309930	-	CPE0948	-	DNA-binding response regulator
949	 27.47	0	1147720..1148640	+	306	18309931	-	CPE0949	-	ABC transporter
950	 23.51	-1	1148633..1149385	+	250	18309932	-	CPE0950	-	hypothetical protein
951	 26.16	0	1149399..1150304	+	301	18309933	-	CPE0951	-	sensor histidine kinase
952	 24.12	-1	1150404..1150631	-	75	18309934	-	CPE0952	-	hypothetical protein
953	 29.62	0	1150930..1152141	+	403	18309935	-	CPE0953	-	pyridine nucleotide-disulphide oxidoreductase family protein
954	 29.98	0	1152358..1152894	+	178	18309936	gpo	CPE0954	-	glutathione peroxidase
955	 41.96	+2	1153011..1154204	-	397	18309937	clg	CPE0955	-	collagen triple helix repeat protein
956	 22.84	-1	1154306..1154896	-	196	18309938	-	CPE0956	-	putative metal-dependent hydrolase, membrane-bound
957	 21.00	-2	1155088..1155306	-	72	18309939	-	CPE0957	-	hypothetical protein
958	 27.32	0	1155516..1156130	+	204	18309940	mutT	CPE0958	-	mutator MutT protein
959	 28.85	0	1156225..1156380	-	51	18309941	-	CPE0959	-	hypothetical protein
960	 23.05	-1	1156509..1157150	+	213	18309942	-	CPE0960	-	hypothetical protein
961	 24.31	-1	1157357..1157788	+	143	18309943	-	CPE0961	-	MarR family transcriptional regulator
962	 26.35	0	1158113..1159072	+	319	18309944	-	CPE0962	-	hypothetical protein
963	 29.88	0	1159176..1160798	-	540	18309945	-	CPE0963	-	transporter
964	 23.39	-1	1161203..1161373	+	56	18309946	-	CPE0964	-	hypothetical protein
965	 21.61	-2	1161697..1163334	-	545	18309947	-	CPE0965	-	GGDEF domain protein
966	 27.50	0	1163773..1164252	+	159	18309948	-	CPE0966	-	hypothetical protein
967	 30.67	0	1164789..1165952	+	387	18309949	-	CPE0967	-	glutamate/ aspartate transporter
968	 21.29	-2	1166285..1167280	+	331	18309950	-	CPE0968	-	hypothetical protein
969	 24.80	-1	1167573..1169483	+	636	18309951	-	CPE0969	-	hypothetical protein
970	 30.10	0	1169513..1170967	-	484	18309952	-	CPE0970	-	Na+/H+ antiporter
971	 22.71	-1	1170996..1171616	-	206	18309953	-	CPE0971	-	hypothetical protein
972	 29.52	0	1171854..1172639	+	261	18309954	hisB	CPE0972	-	histidinol phosphatase
973	 28.07	0	1172822..1172992	-	56	18309955	-	CPE0973	-	hypothetical protein
974	 27.65	0	1173309..1174328	-	339	18309956	-	CPE0974	-	hypothetical protein
975	 30.60	0	1174529..1176469	+	646	18309957	-	CPE0975	-	tetracycline resistant protein
976	 23.16	-1	1176634..1176987	+	117	18309958	-	CPE0976	-	hypothetical protein
977	 27.55	0	1177094..1178044	-	316	18309959	-	CPE0977	-	hypothetical protein
978	 29.56	0	1178435..1179097	-	220	18309960	-	CPE0978	-	hypothetical protein
979	 29.24	0	1179675..1180187	-	170	18309961	-	CPE0979	-	ferritin family protein
980	 22.59	-1	1180337..1181155	-	272	18309962	-	CPE0980	-	transcriptional regulator
981	 29.24	0	1181316..1183148	+	610	18309963	-	CPE0981	-	glycosyl hydrolase, family 20
982	 32.26	0	1183266..1183733	+	155	18309964	-	CPE0982	-	hypothetical protein
983	 32.18	0	1183854..1184630	-	258	18309965	-	CPE0983	-	hypothetical protein
984	 30.73	0	1184746..1186167	-	473	18309966	spoVAF	CPE0984	-	stage V sporulation protein AF
985	 31.21	0	1186397..1187905	-	502	18309967	-	CPE0985	-	hypothetical protein
986	 25.32	-1	1188307..1190178	+	623	18309968	-	CPE0986	-	two-component sensor histidine kinase
987	 32.87	+1	1190402..1191469	+	355	18309969	pfoS	CPE0987	-	regulatory protein
988	 32.60	+1	1191501..1192181	+	226	18309970	sdhB	CPE0988	-	L-serine dehydratase beta subunit
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.