IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
746	 31.62	0	923942..924643	+	233	18309728	-	CPE0746	-	ABC transporter ATP-binding protein
747	 29.10	0	924660..928058	+	1132	18309729	-	CPE0747	-	hypothetical protein
748	 24.04	-1	928284..928649	+	121	18309730	-	CPE0748	-	hypothetical protein
749	 22.98	-1	928856..929869	+	337	18309731	-	CPE0749	-	hypothetical protein
750	 22.87	-1	929956..930366	+	136	18309732	-	CPE0750	-	hypothetical protein
751	 20.47	-2	930503..930673	+	56	18309733	-	CPE0751	-	hypothetical protein
752	 26.84	0	930915..931253	+	112	18309734	-	CPE0752	-	hypothetical protein
753	 20.00	-2	931305..932249	+	314	18309735	-	CPE0753	-	hypothetical protein
754	 27.50	0	932386..933843	-	485	18309736	clsC	CPE0754	-	cardiolipin synthetase
755	 27.07	0	934078..934572	+	164	18309737	-	CPE0755	-	hypothetical protein
756	 30.01	0	934665..935927	-	420	18309738	-	CPE0756	-	cytosine deaminase
757	 32.54	0	936375..937130	+	251	18309739	-	CPE0757	-	creatinase
758	 28.80	0	937179..938105	+	308	18309740	-	CPE0758	-	hypothetical protein
759	 25.50	-1	938231..939430	-	399	18309741	-	CPE0759	-	hypothetical protein
760	 29.20	0	939619..940029	+	136	18309742	def	CPE0760	-	peptide deformylase
761	 31.91	0	940362..941627	-	421	18309743	gltT	CPE0761	-	proton/sodium- glutamate symport protein
762	 25.54	-1	942203..942895	-	230	18309744	-	CPE0762	-	HAD superfamily (subfamily IA) hydrolase
763	 25.26	-1	943121..944074	+	317	18309745	-	CPE0763	-	hypothetical protein
764	 25.56	-1	944309..944938	-	209	18309746	-	CPE0764	-	hypothetical protein
765	 22.64	-1	945090..945893	+	267	18309747	-	CPE0765	-	transcriptional regulator
766	 28.24	0	946053..947447	-	464	18309748	-	CPE0766	-	hypothetical protein
767	 25.92	0	947568..948767	-	399	18309749	-	CPE0767	-	IS1136 transposase
768	 33.33	+1	949320..949475	+	51	18309750	-	CPE0768	-	hypothetical protein
769	 29.01	0	949815..951179	+	454	18309751	gutA	CPE0769	-	sugar transport protein
770	 28.21	0	951402..952241	-	279	18309752	-	CPE0770	-	transcriptional regulator
771	 27.66	0	952605..955634	+	1009	18309753	bgaL	CPE0771	-	beta-galactosidase
772	 30.52	0	955777..957018	-	413	18309754	-	CPE0772	-	hypothetical protein
773	 19.61	-2	957162..957314	-	50	18309755	-	CPE0773	-	hypothetical protein
774	 26.51	0	957776..958522	+	248	18309756	-	CPE0774	-	hypothetical protein
775	 26.47	0	958700..959398	+	232	18309757	-	CPE0775	-	hypothetical protein
776	 27.21	0	959551..960252	+	233	18309758	-	CPE0776	-	transcriptional regulator
777	 32.72	+1	960510..960671	-	53	18309759	rubR1	CPE0777	-	rubredoxin
778	 26.91	0	961274..962020	+	248	18309760	-	CPE0778	-	flavohemoprotein
779	 27.57	0	962239..962949	+	236	18309761	-	CPE0779	-	transcriptional regulator
780	 35.19	+1	963004..963165	-	53	18309762	rubR2	CPE0780	-	rubredoxin
781	 25.80	0	963192..964412	-	406	18309763	-	CPE0781	-	metallo-beta-lactamase family protein
782	 32.98	+1	964622..965191	+	189	18309764	-	CPE0782	-	alkyl hydrogen peroxide reductase
783	 31.36	0	965438..967108	+	556	18309765	-	CPE0783	-	thioredoxin reductase
784	 25.42	-1	967229..968935	-	568	18309766	vgaB	CPE0784	-	ABC transporter
785	 31.54	0	969653..970711	+	352	18309767	pfoS/R	CPE0785	-	regulatory protein
786	 31.50	0	970747..971673	+	308	18309768	apbA	CPE0786	-	2-dehydropantoate 2-reductase
787	 28.17	0	971936..972361	+	141	18309769	-	CPE0787	-	MarR family transcriptional regulator
788	 24.80	-1	972580..973083	+	167	18309770	-	CPE0788	-	hypothetical protein
789	 24.10	-1	973186..973629	+	147	18309771	-	CPE0789	-	transcriptional regulator
790	 30.95	0	973712..974593	+	293	18309772	-	CPE0790	-	pirin-like protein
791	 27.14	0	974627..975223	+	198	18309773	-	CPE0791	-	NAD(P)H dehydrogenase
792	 30.28	0	975399..976349	-	316	18309774	-	CPE0792	-	iron(III) dicitrate ABC transporter
793	 29.55	0	976479..977483	+	334	18309775	-	CPE0793	-	iron(III) dicitrate ABC transporter
794	 27.86	0	977483..978505	+	340	18309776	-	CPE0794	-	iron(III) dicitrate ABC transporter
795	 27.11	0	978511..979281	+	256	18309777	-	CPE0795	-	iron(III) dicitrate ABC transporter
796	 29.84	0	979635..980150	+	171	18309778	-	CPE0796	-	MutT/nudix family protein
797	 27.84	0	980300..980881	-	193	18309779	-	CPE0797	-	PAP2 family protein
798	 27.40	0	981105..981845	+	246	18309780	-	CPE0798	-	hypothetical protein
799	 26.83	0	982027..983271	+	414	18309781	-	CPE0799	-	hypothetical protein
800	 22.92	-1	983406..983933	-	175	18309782	-	CPE0800	-	hypothetical protein
801	 26.71	0	984452..984919	+	155	18309783	-	CPE0801	-	hypothetical protein
802	 27.50	0	985047..985406	+	119	18309784	-	CPE0802	-	hypothetical protein
803	 28.04	0	985384..985761	+	125	18309785	-	CPE0803	-	hypothetical protein
804	 26.51	0	985945..987819	+	624	18309786	-	CPE0804	-	sensory box protein/histidinol phosphate phosphatase family protein
805	 30.28	0	988114..989946	+	610	18309787	-	CPE0805	-	cyclomaltodextrinase
806	 30.76	0	990191..991474	+	427	18309788	-	CPE0806	-	hypothetical protein
807	 22.62	-1	991753..992256	-	167	18309789	-	CPE0807	-	hypothetical protein
808	 23.26	-1	992576..993121	+	181	18309790	-	CPE0808	-	hypothetical protein
809	 27.86	0	993161..993781	-	206	18309791	-	CPE0809	-	hypothetical protein
810	 32.17	0	994044..994988	+	314	18309792	fhuD	CPE0810	-	iron(III) dicitrate ABC transporter
811	 32.54	0	995087..996100	+	337	18309793	fhuB	CPE0811	-	ferrichrome ABC transporter
812	 28.90	0	996104..997117	+	337	18309794	fhuG	CPE0812	-	ferrichrome ABC transporter
813	 31.93	0	997182..997964	+	260	18309795	fhuC	CPE0813	-	ferrichrome ABC transporter
814	 26.58	0	998264..998752	+	162	18309796	-	CPE0814	-	GNAT family acetyltransferase
815	 25.46	-1	998829..999044	+	71	18309797	-	CPE0815	-	hypothetical protein
816	 20.75	-2	999037..999354	+	105	18309798	-	CPE0816	-	hypothetical protein
817	 21.41	-2	999566..999892	-	108	18309799	-	CPE0817	-	hypothetical protein
818	 33.33	+1	1000306..1003689	+	1127	18309800	-	CPE0818	-	endo-beta-N-acetylglucosaminidase
819	 28.16	0	1003890..1004798	+	302	18309801	ddl	CPE0819	-	D-alanine--D-alanine ligase
820	 26.69	0	1004945..1005772	+	275	18309802	-	CPE0820	-	hypothetical protein
821	 35.88	+1	1006099..1007079	+	326	18309803	-	CPE0821	-	PTS system
822	 37.56	+2	1007130..1007933	+	267	18309804	-	CPE0822	-	PTS system, mannose/fructose/sorbose family, IIC component
823	 35.77	+1	1007953..1008444	+	163	18309805	-	CPE0823	-	PTS system
824	 33.55	+1	1008407..1008865	+	152	18309806	-	CPE0824	-	PTS system
825	 29.07	0	1009036..1009410	+	124	18309807	-	CPE0825	-	hypothetical protein
826	 28.17	0	1009782..1010033	+	83	18309808	-	CPE0826	-	hypothetical protein
827	 30.61	0	1010354..1011271	+	305	18309809	-	CPE0827	-	polysaccharide deacetylase family protein
828	 22.61	-1	1011728..1012510	+	260	18309810	-	CPE0828	-	hypothetical protein
829	 25.90	0	1012767..1013708	+	313	18309811	-	CPE0829	-	hypothetical protein
830	 27.29	0	1013773..1015128	-	451	18309812	-	CPE0830	-	hypothetical protein
831	 29.19	0	1015357..1017771	+	804	18309813	bgaL	CPE0831	-	beta-galactosidase
832	 29.98	0	1018565..1019518	+	317	18309814	-	CPE0832	-	hypothetical protein
833	 28.50	0	1020041..1021861	+	606	18309815	-	CPE0833	-	ABC transporter
834	 27.30	0	1021861..1023651	+	596	18309816	-	CPE0834	-	ABC transporter
835	 29.72	0	1023868..1024365	+	165	18309817	-	CPE0835	-	hypothetical protein
836	 24.98	-1	1024374..1026002	+	542	18309818	-	CPE0836	-	hypothetical protein
837	 25.61	-1	1026369..1026653	+	94	18309819	-	CPE0837	-	transcriptional regulator
838	 31.58	0	1026771..1027169	+	132	18309820	-	CPE0838	-	arsenate reductase ArsC
839	 30.07	0	1027186..1028502	+	438	18309821	-	CPE0839	-	hypothetical protein
840	 28.25	0	1028688..1029356	+	222	18309822	-	CPE0840	-	two-component response regulator
841	 26.31	0	1029353..1030363	+	336	18309823	-	CPE0841	-	two-component sensor histidine kinase
842	 19.64	-2	1030647..1030814	+	55	18309824	-	CPE0842	-	hypothetical protein
843	 24.15	-1	1030943..1031356	+	137	18309825	-	CPE0843	-	hypothetical protein
844	 23.90	-1	1031615..1031773	-	52	18309826	-	CPE0844	-	hypothetical protein
845	 26.96	0	1031779..1032390	-	203	18309827	-	CPE0845	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.