IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
691	 29.80	0	860568..861785	-	405	18309673	argG	CPE0691	-	argininosuccinate synthase
692	 31.79	0	862390..863037	+	215	18309674	-	CPE0692	-	putative translaldolase
693	 32.23	0	863437..868497	+	1686	18309675	-	CPE0693	-	hypothetical protein
694	 34.71	+1	868969..869982	+	337	18309676	-	CPE0694	-	3-deoxy-7-phosphoheptulonate synthase
695	 28.58	0	870079..871131	+	350	18309677	aroB	CPE0695	-	3-dehydroquinate synthase
696	 28.63	0	871378..872652	+	424	18309678	aroA	CPE0696	-	3-phosphoshikimate 1-carboxyvinyltransferase
697	 32.31	0	872716..873789	+	357	161485643	aroC	CPE0697	-	chorismate synthase
698	 27.21	0	873958..874251	+	97	18309680	-	CPE0698	-	chorismate mutase
699	 18.95	-2	874579..874731	+	50	18309681	-	CPE0699	-	hypothetical protein
700	 28.80	0	875075..875890	+	271	18309682	aroE	CPE0700	-	shikimate 5-dehydrogenase
701	 30.43	0	876144..876659	+	171	18309683	aroK	CPE0701	-	shikimate kinase
702	 29.48	0	876855..877295	+	146	18309684	aroQ	CPE0702	-	3-dehydroquinate dehydratase
703	 23.64	-1	877378..877893	+	171	18309685	-	CPE0703	-	hypothetical protein
704	 27.93	0	878020..878352	+	110	18309686	-	CPE0704	-	30S ribosomal protein
705	 23.89	-1	878354..879211	+	285	18309687	-	CPE0705	-	hypothetical protein
706	 22.54	-1	879423..880265	+	280	18309688	-	CPE0706	-	hypothetical protein
707	 29.74	0	880391..881281	+	296	18309689	-	CPE0707	-	ABC transporter
708	 28.22	0	881283..882494	+	403	18309690	-	CPE0708	-	hypothetical protein
709	 27.47	0	882605..883594	+	329	18309691	cbh	CPE0709	-	choloylglycine hydrolase
710	 32.51	0	884390..884872	+	160	18309692	-	CPE0710	-	AsnC family transcriptional regulator
711	 33.59	+1	884869..886047	+	392	18309693	aspC	CPE0711	-	aspartate aminotransferase
712	 27.00	0	886162..887187	+	341	18309694	-	CPE0712	-	hypothetical protein
713	 20.43	-2	887244..887708	-	154	18309695	-	CPE0713	-	hypothetical protein
714	 27.30	0	887767..888909	-	380	18309696	-	CPE0714	-	hypothetical protein
715	 26.36	0	889388..889903	+	171	18309697	-	CPE0715	-	GNAT family acetyltransferase
716	 27.94	0	890124..890642	+	172	18309698	sigW	CPE0716	-	RNA polymerase ECF-type sigma factor
717	 26.11	0	890718..892130	+	470	18309699	-	CPE0717	-	hypothetical protein
718	 28.43	0	892351..893553	+	400	18309700	-	CPE0718	-	DHHA1 domain protein
719	 25.67	0	893608..894612	+	334	18309701	-	CPE0719	-	capsular polysaccharide biosynthesis protein
720	 29.34	0	894764..895939	+	391	18309702	-	CPE0720	-	hypothetical protein
721	 31.59	0	896376..897233	+	285	18309703	-	CPE0721	-	zinc transporter ZupT
722	 27.45	0	897523..898185	+	220	18309704	-	CPE0722	-	DeoR family transcriptional regulator
723	 28.64	0	898316..899104	+	262	18309705	-	CPE0723	-	HAD hydrolase, IIB family
724	 27.02	0	899303..900331	+	342	18309706	splB	CPE0724	-	spore photoproduct lyase
725	 28.63	0	900997..903081	+	694	18309707	nanI	CPE0725	-	exo-alpha-sialidase
726	 30.65	0	903129..904283	+	384	18309708	-	CPE0726	-	hypothetical protein
727	 29.00	0	904693..905499	+	268	18309709	-	CPE0727	-	hypothetical protein
728	 31.18	0	905664..905942	+	92	18309710	-	CPE0728	-	hypothetical protein
729	 29.94	0	905890..906390	+	166	18309711	-	CPE0729	-	hypothetical protein
730	 25.16	-1	906584..907048	+	154	18309712	-	CPE0730	-	hypothetical protein
731	 25.42	-1	907404..907580	+	58	18309713	-	CPE0731	-	hypothetical protein
732	 33.16	+1	907833..908408	+	191	18309714	-	CPE0732	-	hypothetical protein
733	 24.97	-1	908623..909519	-	298	18309715	-	CPE0733	-	LysR family transcriptional regulator
734	 31.98	0	909869..911569	+	566	18309716	naoX	CPE0734	-	pyridine nucleotide-disulphide oxidoreductase family protein
735	 32.79	+1	911675..912961	+	428	18309717	-	CPE0735	-	YeeE/YedE family protein
736	 27.63	0	913050..914381	+	443	18309718	-	CPE0736	-	amino acid ABC transporter permease
737	 24.74	-1	914540..915202	-	220	18309719	-	CPE0737	-	putative fibronectin-binding protein
738	 27.96	0	915477..915755	-	92	18309720	-	CPE0738	-	hypothetical protein
739	 26.73	0	916103..916420	+	105	18309721	-	CPE0739	-	thioredoxin
740	 26.73	0	916727..917059	+	110	18309722	-	CPE0740	-	hypothetical protein
741	 26.73	0	917086..918297	+	403	18309723	-	CPE0741	-	cytochrome C-type biogenesis protein
742	 26.77	0	918827..920548	+	573	18309724	lipB	CPE0742	-	lipase
743	 32.78	+1	921005..922456	+	483	18309725	cstA	CPE0743	-	carbon starvation protein CstA
744	 31.35	0	922600..922902	+	100	18309726	-	CPE0744	-	hypothetical protein
745	 27.57	0	922990..923544	-	184	18309727	-	CPE0745	-	hypothetical protein
746	 31.62	0	923942..924643	+	233	18309728	-	CPE0746	-	ABC transporter ATP-binding protein
747	 29.10	0	924660..928058	+	1132	18309729	-	CPE0747	-	hypothetical protein
748	 24.04	-1	928284..928649	+	121	18309730	-	CPE0748	-	hypothetical protein
749	 22.98	-1	928856..929869	+	337	18309731	-	CPE0749	-	hypothetical protein
750	 22.87	-1	929956..930366	+	136	18309732	-	CPE0750	-	hypothetical protein
751	 20.47	-2	930503..930673	+	56	18309733	-	CPE0751	-	hypothetical protein
752	 26.84	0	930915..931253	+	112	18309734	-	CPE0752	-	hypothetical protein
753	 20.00	-2	931305..932249	+	314	18309735	-	CPE0753	-	hypothetical protein
754	 27.50	0	932386..933843	-	485	18309736	clsC	CPE0754	-	cardiolipin synthetase
755	 27.07	0	934078..934572	+	164	18309737	-	CPE0755	-	hypothetical protein
756	 30.01	0	934665..935927	-	420	18309738	-	CPE0756	-	cytosine deaminase
757	 32.54	0	936375..937130	+	251	18309739	-	CPE0757	-	creatinase
758	 28.80	0	937179..938105	+	308	18309740	-	CPE0758	-	hypothetical protein
759	 25.50	-1	938231..939430	-	399	18309741	-	CPE0759	-	hypothetical protein
760	 29.20	0	939619..940029	+	136	18309742	def	CPE0760	-	peptide deformylase
761	 31.91	0	940362..941627	-	421	18309743	gltT	CPE0761	-	proton/sodium- glutamate symport protein
762	 25.54	-1	942203..942895	-	230	18309744	-	CPE0762	-	HAD superfamily (subfamily IA) hydrolase
763	 25.26	-1	943121..944074	+	317	18309745	-	CPE0763	-	hypothetical protein
764	 25.56	-1	944309..944938	-	209	18309746	-	CPE0764	-	hypothetical protein
765	 22.64	-1	945090..945893	+	267	18309747	-	CPE0765	-	transcriptional regulator
766	 28.24	0	946053..947447	-	464	18309748	-	CPE0766	-	hypothetical protein
767	 25.92	0	947568..948767	-	399	18309749	-	CPE0767	-	IS1136 transposase
768	 33.33	+1	949320..949475	+	51	18309750	-	CPE0768	-	hypothetical protein
769	 29.01	0	949815..951179	+	454	18309751	gutA	CPE0769	-	sugar transport protein
770	 28.21	0	951402..952241	-	279	18309752	-	CPE0770	-	transcriptional regulator
771	 27.66	0	952605..955634	+	1009	18309753	bgaL	CPE0771	-	beta-galactosidase
772	 30.52	0	955777..957018	-	413	18309754	-	CPE0772	-	hypothetical protein
773	 19.61	-2	957162..957314	-	50	18309755	-	CPE0773	-	hypothetical protein
774	 26.51	0	957776..958522	+	248	18309756	-	CPE0774	-	hypothetical protein
775	 26.47	0	958700..959398	+	232	18309757	-	CPE0775	-	hypothetical protein
776	 27.21	0	959551..960252	+	233	18309758	-	CPE0776	-	transcriptional regulator
777	 32.72	+1	960510..960671	-	53	18309759	rubR1	CPE0777	-	rubredoxin
778	 26.91	0	961274..962020	+	248	18309760	-	CPE0778	-	flavohemoprotein
779	 27.57	0	962239..962949	+	236	18309761	-	CPE0779	-	transcriptional regulator
780	 35.19	+1	963004..963165	-	53	18309762	rubR2	CPE0780	-	rubredoxin
781	 25.80	0	963192..964412	-	406	18309763	-	CPE0781	-	metallo-beta-lactamase family protein
782	 32.98	+1	964622..965191	+	189	18309764	-	CPE0782	-	alkyl hydrogen peroxide reductase
783	 31.36	0	965438..967108	+	556	18309765	-	CPE0783	-	thioredoxin reductase
784	 25.42	-1	967229..968935	-	568	18309766	vgaB	CPE0784	-	ABC transporter
785	 31.54	0	969653..970711	+	352	18309767	pfoS/R	CPE0785	-	regulatory protein
786	 31.50	0	970747..971673	+	308	18309768	apbA	CPE0786	-	2-dehydropantoate 2-reductase
787	 28.17	0	971936..972361	+	141	18309769	-	CPE0787	-	MarR family transcriptional regulator
788	 24.80	-1	972580..973083	+	167	18309770	-	CPE0788	-	hypothetical protein
789	 24.10	-1	973186..973629	+	147	18309771	-	CPE0789	-	transcriptional regulator
790	 30.95	0	973712..974593	+	293	18309772	-	CPE0790	-	pirin-like protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.