IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
663	 24.87	-1	827578..828888	-	436	18309645	-	CPE0663	-	F5/8 type C domain protein
664	 34.20	+1	829607..829951	-	114	18309646	-	CPE0664	-	hypothetical protein
665	 28.42	0	830406..831137	+	243	18309647	-	CPE0665	-	hypothetical protein
666	 28.57	0	831185..831457	+	90	18309648	-	CPE0666	-	transposase
667	 31.64	0	831468..831821	+	117	18309649	-	CPE0667	-	transposase
668	 29.85	0	831763..832623	+	286	18309650	-	CPE0668	-	transposase
669	 25.20	-1	832865..833872	+	335	18309651	-	CPE0669	-	hypothetical protein
670	 33.41	+1	834018..836468	-	816	18309652	leuS	CPE0670	-	leucyl-tRNA synthetase
671	 27.81	0	837243..837803	-	186	18309653	-	CPE0671	-	hypothetical protein
672	 23.97	-1	838095..838457	+	120	18309654	-	CPE0672	-	hypothetical protein
673	 30.80	0	838662..839648	+	328	18309655	birA	CPE0673	-	bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase
674	 24.40	-1	839807..840892	+	361	18309656	-	CPE0674	-	HRDC domain protein
675	 16.67	-2	840894..841061	+	55	18309657	-	CPE0675	-	hypothetical protein
676	 26.94	0	841162..841896	+	244	18309658	-	CPE0676	-	hypothetical protein
677	 23.86	-1	842086..842391	+	101	18309659	-	CPE0677	-	hypothetical protein
678	 29.34	0	842638..843288	+	216	18309660	dut	CPE0678	-	deoxyuridine 5`-triphosphate nucleotidohydrolase
679	 31.58	0	843791..845101	+	436	18309661	thiC	CPE0679	-	thiamine biosynthesis protein ThiC
680	 31.86	0	845339..849139	+	1266	18309662	purL	CPE0680	-	phosphoribosylformylglycinamidine synthase
681	 33.54	+1	849450..849929	+	159	18309663	purE	CPE0681	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
682	 28.95	0	849929..850636	+	235	18309664	purC	CPE0682	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
683	 34.23	+1	850658..852103	+	481	18309665	purF	CPE0683	-	amidophosphoribosyltransferase
684	 31.64	0	852104..853105	+	333	18309666	purM	CPE0684	-	phosphoribosylaminoimidazole synthetase
685	 30.08	0	853093..853707	+	204	18309667	purN	CPE0685	-	phosphoribosylglycinamide formyltransferase
686	 30.94	0	853720..855225	+	501	18309668	purH	CPE0686	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
687	 30.63	0	855632..856591	+	319	18309669	purD	CPE0687	-	phosphoribosylamine-glycine ligase
688	 31.68	0	857504..857866	+	120	18309670	-	CPE0688	-	hypothetical protein
689	 34.62	+1	858399..858941	+	180	18309671	-	CPE0689	-	hypothetical protein
690	 28.34	0	859074..860474	-	466	18309672	argH	CPE0690	-	argininosuccinate lyase
691	 29.80	0	860568..861785	-	405	18309673	argG	CPE0691	-	argininosuccinate synthase
692	 31.79	0	862390..863037	+	215	18309674	-	CPE0692	-	putative translaldolase
693	 32.23	0	863437..868497	+	1686	18309675	-	CPE0693	-	hypothetical protein
694	 34.71	+1	868969..869982	+	337	18309676	-	CPE0694	-	3-deoxy-7-phosphoheptulonate synthase
695	 28.58	0	870079..871131	+	350	18309677	aroB	CPE0695	-	3-dehydroquinate synthase
696	 28.63	0	871378..872652	+	424	18309678	aroA	CPE0696	-	3-phosphoshikimate 1-carboxyvinyltransferase
697	 32.31	0	872716..873789	+	357	161485643	aroC	CPE0697	-	chorismate synthase
698	 27.21	0	873958..874251	+	97	18309680	-	CPE0698	-	chorismate mutase
699	 18.95	-2	874579..874731	+	50	18309681	-	CPE0699	-	hypothetical protein
700	 28.80	0	875075..875890	+	271	18309682	aroE	CPE0700	-	shikimate 5-dehydrogenase
701	 30.43	0	876144..876659	+	171	18309683	aroK	CPE0701	-	shikimate kinase
702	 29.48	0	876855..877295	+	146	18309684	aroQ	CPE0702	-	3-dehydroquinate dehydratase
703	 23.64	-1	877378..877893	+	171	18309685	-	CPE0703	-	hypothetical protein
704	 27.93	0	878020..878352	+	110	18309686	-	CPE0704	-	30S ribosomal protein
705	 23.89	-1	878354..879211	+	285	18309687	-	CPE0705	-	hypothetical protein
706	 22.54	-1	879423..880265	+	280	18309688	-	CPE0706	-	hypothetical protein
707	 29.74	0	880391..881281	+	296	18309689	-	CPE0707	-	ABC transporter
708	 28.22	0	881283..882494	+	403	18309690	-	CPE0708	-	hypothetical protein
709	 27.47	0	882605..883594	+	329	18309691	cbh	CPE0709	-	choloylglycine hydrolase
710	 32.51	0	884390..884872	+	160	18309692	-	CPE0710	-	AsnC family transcriptional regulator
711	 33.59	+1	884869..886047	+	392	18309693	aspC	CPE0711	-	aspartate aminotransferase
712	 27.00	0	886162..887187	+	341	18309694	-	CPE0712	-	hypothetical protein
713	 20.43	-2	887244..887708	-	154	18309695	-	CPE0713	-	hypothetical protein
714	 27.30	0	887767..888909	-	380	18309696	-	CPE0714	-	hypothetical protein
715	 26.36	0	889388..889903	+	171	18309697	-	CPE0715	-	GNAT family acetyltransferase
716	 27.94	0	890124..890642	+	172	18309698	sigW	CPE0716	-	RNA polymerase ECF-type sigma factor
717	 26.11	0	890718..892130	+	470	18309699	-	CPE0717	-	hypothetical protein
718	 28.43	0	892351..893553	+	400	18309700	-	CPE0718	-	DHHA1 domain protein
719	 25.67	0	893608..894612	+	334	18309701	-	CPE0719	-	capsular polysaccharide biosynthesis protein
720	 29.34	0	894764..895939	+	391	18309702	-	CPE0720	-	hypothetical protein
721	 31.59	0	896376..897233	+	285	18309703	-	CPE0721	-	zinc transporter ZupT
722	 27.45	0	897523..898185	+	220	18309704	-	CPE0722	-	DeoR family transcriptional regulator
723	 28.64	0	898316..899104	+	262	18309705	-	CPE0723	-	HAD hydrolase, IIB family
724	 27.02	0	899303..900331	+	342	18309706	splB	CPE0724	-	spore photoproduct lyase
725	 28.63	0	900997..903081	+	694	18309707	nanI	CPE0725	-	exo-alpha-sialidase
726	 30.65	0	903129..904283	+	384	18309708	-	CPE0726	-	hypothetical protein
727	 29.00	0	904693..905499	+	268	18309709	-	CPE0727	-	hypothetical protein
728	 31.18	0	905664..905942	+	92	18309710	-	CPE0728	-	hypothetical protein
729	 29.94	0	905890..906390	+	166	18309711	-	CPE0729	-	hypothetical protein
730	 25.16	-1	906584..907048	+	154	18309712	-	CPE0730	-	hypothetical protein
731	 25.42	-1	907404..907580	+	58	18309713	-	CPE0731	-	hypothetical protein
732	 33.16	+1	907833..908408	+	191	18309714	-	CPE0732	-	hypothetical protein
733	 24.97	-1	908623..909519	-	298	18309715	-	CPE0733	-	LysR family transcriptional regulator
734	 31.98	0	909869..911569	+	566	18309716	naoX	CPE0734	-	pyridine nucleotide-disulphide oxidoreductase family protein
735	 32.79	+1	911675..912961	+	428	18309717	-	CPE0735	-	YeeE/YedE family protein
736	 27.63	0	913050..914381	+	443	18309718	-	CPE0736	-	amino acid ABC transporter permease
737	 24.74	-1	914540..915202	-	220	18309719	-	CPE0737	-	putative fibronectin-binding protein
738	 27.96	0	915477..915755	-	92	18309720	-	CPE0738	-	hypothetical protein
739	 26.73	0	916103..916420	+	105	18309721	-	CPE0739	-	thioredoxin
740	 26.73	0	916727..917059	+	110	18309722	-	CPE0740	-	hypothetical protein
741	 26.73	0	917086..918297	+	403	18309723	-	CPE0741	-	cytochrome C-type biogenesis protein
742	 26.77	0	918827..920548	+	573	18309724	lipB	CPE0742	-	lipase
743	 32.78	+1	921005..922456	+	483	18309725	cstA	CPE0743	-	carbon starvation protein CstA
744	 31.35	0	922600..922902	+	100	18309726	-	CPE0744	-	hypothetical protein
745	 27.57	0	922990..923544	-	184	18309727	-	CPE0745	-	hypothetical protein
746	 31.62	0	923942..924643	+	233	18309728	-	CPE0746	-	ABC transporter ATP-binding protein
747	 29.10	0	924660..928058	+	1132	18309729	-	CPE0747	-	hypothetical protein
748	 24.04	-1	928284..928649	+	121	18309730	-	CPE0748	-	hypothetical protein
749	 22.98	-1	928856..929869	+	337	18309731	-	CPE0749	-	hypothetical protein
750	 22.87	-1	929956..930366	+	136	18309732	-	CPE0750	-	hypothetical protein
751	 20.47	-2	930503..930673	+	56	18309733	-	CPE0751	-	hypothetical protein
752	 26.84	0	930915..931253	+	112	18309734	-	CPE0752	-	hypothetical protein
753	 20.00	-2	931305..932249	+	314	18309735	-	CPE0753	-	hypothetical protein
754	 27.50	0	932386..933843	-	485	18309736	clsC	CPE0754	-	cardiolipin synthetase
755	 27.07	0	934078..934572	+	164	18309737	-	CPE0755	-	hypothetical protein
756	 30.01	0	934665..935927	-	420	18309738	-	CPE0756	-	cytosine deaminase
757	 32.54	0	936375..937130	+	251	18309739	-	CPE0757	-	creatinase
758	 28.80	0	937179..938105	+	308	18309740	-	CPE0758	-	hypothetical protein
759	 25.50	-1	938231..939430	-	399	18309741	-	CPE0759	-	hypothetical protein
760	 29.20	0	939619..940029	+	136	18309742	def	CPE0760	-	peptide deformylase
761	 31.91	0	940362..941627	-	421	18309743	gltT	CPE0761	-	proton/sodium- glutamate symport protein
762	 25.54	-1	942203..942895	-	230	18309744	-	CPE0762	-	HAD superfamily (subfamily IA) hydrolase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.