IslandPathversion 1.0

IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.13 STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
622	 26.59	0	778167..778907	+	246	18309604	-	CPE0622	-	hypothetical protein
623	 23.48	-1	778916..780367	+	483	18309605	-	CPE0623	-	capsular polysaccharide synthesis protein
624	 29.46	0	780389..782812	+	807	18309606	-	CPE0624	-	hypothetical protein
625	 30.85	0	782941..784593	+	550	18309607	-	CPE0625	-	hypothetical protein
626	 28.72	0	784795..786159	+	454	18309608	-	CPE0626	-	hypothetical protein
627	 27.55	0	786364..788232	+	622	18309609	licA	CPE0627	-	choline kinase
628	 30.34	0	788258..789226	+	322	18309610	licB	CPE0628	-	lic-1 operon protein
629	 27.78	0	789373..790056	+	227	18309611	licC	CPE0629	-	lic-1 operon protein
630	 31.63	0	790175..791467	-	430	18309612	-	CPE0630	-	hypothetical protein
631	 30.29	0	791586..792605	-	339	18309613	-	CPE0631	-	PBP5 synthesis regulator protein
632	 29.88	0	792885..794159	-	424	18309614	brnQ	CPE0632	-	branched chain amino acid ABC transporter carrier protein
633	 31.03	0	794912..795910	+	332	18309615	trpS	CPE0633	-	tryptophanyl-tRNA synthetase
634	 21.85	-2	796572..797111	+	179	18309616	-	CPE0634	-	hypothetical protein
635	 29.74	0	797206..798318	+	370	18309617	-	CPE0635	-	anaerobic sulfatase-maturase
636	 33.81	+1	798746..799576	+	276	18309618	-	CPE0636	-	phosphate ABC transporter phosphate-binding protein
637	 32.48	0	799800..800618	+	272	18309619	-	CPE0637	-	phosphate ABC transporter phosphate-binding protein
638	 32.77	+1	800700..801587	+	295	18309620	-	CPE0638	-	phosphate ABC transporter permease
639	 31.64	0	801590..802414	+	274	18309621	-	CPE0639	-	phosphate ABC transporter permease
640	 31.50	0	802432..803193	+	253	18309622	-	CPE0640	-	phosphate ABC transporter ATP-binding protein
641	 27.06	0	803218..803871	+	217	18309623	phoU	CPE0641	-	phosphate transporter PhoU
642	 27.73	0	804031..804726	+	231	18309624	-	CPE0642	-	DNA-binding response regulator
643	 27.08	0	804897..805520	-	207	18309625	-	CPE0643	-	hypothetical protein
644	 34.29	+1	805554..805970	-	138	18309626	flaV	CPE0644	-	flavodoxin
645	 31.53	0	806384..808042	-	552	18309627	gltX	CPE0645	-	glutaminyl-tRNA synthetase
646	 32.05	0	808295..808450	-	51	18309628	-	CPE0646	-	hypothetical protein
647	 25.90	0	808605..809693	-	362	18309629	-	CPE0647	-	hypothetical protein
648	 30.03	0	809789..811210	+	473	18309630	gerKA	CPE0648	-	spore germination protein KA
649	 28.00	0	811185..812309	+	374	18309631	gerBC	CPE0649	-	spore germination protein B3
650	 26.90	0	812504..813637	+	377	18309632	-	CPE0650	-	AAA domain family protein
651	 25.36	-1	813713..814126	+	137	18309633	-	CPE0651	-	hypothetical protein
652	 32.92	+1	814422..815642	+	406	18309634	tyrS	CPE0652	-	tyrosyl-tRNA synthetase
653	 30.16	0	816062..816754	+	230	18309635	-	CPE0653	-	Ser/Thr protein phosphatase family protein
654	 28.79	0	816873..817664	+	263	18309636	relA	CPE0654	-	relA/spoT family protein
655	 28.50	0	817937..818722	+	261	18309637	-	CPE0655	-	hypothetical protein
656	 29.39	0	818840..819955	+	371	18309638	-	CPE0656	-	hypothetical protein
657	 28.85	0	819969..821306	+	445	18309639	-	CPE0657	-	hypothetical protein
658	 24.35	-1	821464..822855	+	463	18309640	-	CPE0658	-	hypothetical protein
659	 31.46	0	823205..824698	+	497	18309641	-	CPE0659	-	hypothetical protein
660	 28.10	0	824764..825528	+	254	18309642	-	CPE0660	-	4Fe-4S binding domain protein/radical SAM domain protein
661	 24.03	-1	825828..826343	+	171	18309643	-	CPE0661	-	hypothetical protein
662	 27.74	0	826452..827255	-	267	18309644	-	CPE0662	-	hypothetical protein
663	 24.87	-1	827578..828888	-	436	18309645	-	CPE0663	-	F5/8 type C domain protein
664	 34.20	+1	829607..829951	-	114	18309646	-	CPE0664	-	hypothetical protein
665	 28.42	0	830406..831137	+	243	18309647	-	CPE0665	-	hypothetical protein
666	 28.57	0	831185..831457	+	90	18309648	-	CPE0666	-	transposase
667	 31.64	0	831468..831821	+	117	18309649	-	CPE0667	-	transposase
668	 29.85	0	831763..832623	+	286	18309650	-	CPE0668	-	transposase
669	 25.20	-1	832865..833872	+	335	18309651	-	CPE0669	-	hypothetical protein
670	 33.41	+1	834018..836468	-	816	18309652	leuS	CPE0670	-	leucyl-tRNA synthetase
671	 27.81	0	837243..837803	-	186	18309653	-	CPE0671	-	hypothetical protein
672	 23.97	-1	838095..838457	+	120	18309654	-	CPE0672	-	hypothetical protein
673	 30.80	0	838662..839648	+	328	18309655	birA	CPE0673	-	bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase
674	 24.40	-1	839807..840892	+	361	18309656	-	CPE0674	-	HRDC domain protein
675	 16.67	-2	840894..841061	+	55	18309657	-	CPE0675	-	hypothetical protein
676	 26.94	0	841162..841896	+	244	18309658	-	CPE0676	-	hypothetical protein
677	 23.86	-1	842086..842391	+	101	18309659	-	CPE0677	-	hypothetical protein
678	 29.34	0	842638..843288	+	216	18309660	dut	CPE0678	-	deoxyuridine 5`-triphosphate nucleotidohydrolase
679	 31.58	0	843791..845101	+	436	18309661	thiC	CPE0679	-	thiamine biosynthesis protein ThiC
680	 31.86	0	845339..849139	+	1266	18309662	purL	CPE0680	-	phosphoribosylformylglycinamidine synthase
681	 33.54	+1	849450..849929	+	159	18309663	purE	CPE0681	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
682	 28.95	0	849929..850636	+	235	18309664	purC	CPE0682	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
683	 34.23	+1	850658..852103	+	481	18309665	purF	CPE0683	-	amidophosphoribosyltransferase
684	 31.64	0	852104..853105	+	333	18309666	purM	CPE0684	-	phosphoribosylaminoimidazole synthetase
685	 30.08	0	853093..853707	+	204	18309667	purN	CPE0685	-	phosphoribosylglycinamide formyltransferase
686	 30.94	0	853720..855225	+	501	18309668	purH	CPE0686	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
687	 30.63	0	855632..856591	+	319	18309669	purD	CPE0687	-	phosphoribosylamine-glycine ligase
688	 31.68	0	857504..857866	+	120	18309670	-	CPE0688	-	hypothetical protein
689	 34.62	+1	858399..858941	+	180	18309671	-	CPE0689	-	hypothetical protein
690	 28.34	0	859074..860474	-	466	18309672	argH	CPE0690	-	argininosuccinate lyase
691	 29.80	0	860568..861785	-	405	18309673	argG	CPE0691	-	argininosuccinate synthase
692	 31.79	0	862390..863037	+	215	18309674	-	CPE0692	-	putative translaldolase
693	 32.23	0	863437..868497	+	1686	18309675	-	CPE0693	-	hypothetical protein
694	 34.71	+1	868969..869982	+	337	18309676	-	CPE0694	-	3-deoxy-7-phosphoheptulonate synthase
695	 28.58	0	870079..871131	+	350	18309677	aroB	CPE0695	-	3-dehydroquinate synthase
696	 28.63	0	871378..872652	+	424	18309678	aroA	CPE0696	-	3-phosphoshikimate 1-carboxyvinyltransferase
697	 32.31	0	872716..873789	+	357	161485643	aroC	CPE0697	-	chorismate synthase
698	 27.21	0	873958..874251	+	97	18309680	-	CPE0698	-	chorismate mutase
699	 18.95	-2	874579..874731	+	50	18309681	-	CPE0699	-	hypothetical protein
700	 28.80	0	875075..875890	+	271	18309682	aroE	CPE0700	-	shikimate 5-dehydrogenase
701	 30.43	0	876144..876659	+	171	18309683	aroK	CPE0701	-	shikimate kinase
702	 29.48	0	876855..877295	+	146	18309684	aroQ	CPE0702	-	3-dehydroquinate dehydratase
703	 23.64	-1	877378..877893	+	171	18309685	-	CPE0703	-	hypothetical protein
704	 27.93	0	878020..878352	+	110	18309686	-	CPE0704	-	30S ribosomal protein
705	 23.89	-1	878354..879211	+	285	18309687	-	CPE0705	-	hypothetical protein
706	 22.54	-1	879423..880265	+	280	18309688	-	CPE0706	-	hypothetical protein
707	 29.74	0	880391..881281	+	296	18309689	-	CPE0707	-	ABC transporter
708	 28.22	0	881283..882494	+	403	18309690	-	CPE0708	-	hypothetical protein
709	 27.47	0	882605..883594	+	329	18309691	cbh	CPE0709	-	choloylglycine hydrolase
710	 32.51	0	884390..884872	+	160	18309692	-	CPE0710	-	AsnC family transcriptional regulator
711	 33.59	+1	884869..886047	+	392	18309693	aspC	CPE0711	-	aspartate aminotransferase
712	 27.00	0	886162..887187	+	341	18309694	-	CPE0712	-	hypothetical protein
713	 20.43	-2	887244..887708	-	154	18309695	-	CPE0713	-	hypothetical protein
714	 27.30	0	887767..888909	-	380	18309696	-	CPE0714	-	hypothetical protein
715	 26.36	0	889388..889903	+	171	18309697	-	CPE0715	-	GNAT family acetyltransferase
716	 27.94	0	890124..890642	+	172	18309698	sigW	CPE0716	-	RNA polymerase ECF-type sigma factor
717	 26.11	0	890718..892130	+	470	18309699	-	CPE0717	-	hypothetical protein
718	 28.43	0	892351..893553	+	400	18309700	-	CPE0718	-	DHHA1 domain protein
719	 25.67	0	893608..894612	+	334	18309701	-	CPE0719	-	capsular polysaccharide biosynthesis protein
720	 29.34	0	894764..895939	+	391	18309702	-	CPE0720	-	hypothetical protein
721	 31.59	0	896376..897233	+	285	18309703	-	CPE0721	-	zinc transporter ZupT
29.13	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.