IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
536	 26.00	0	666446..667372	+	308	18309518	-	CPE0536	-	transposase
537	 26.01	0	667372..667644	+	90	18309519	-	CPE0537	-	transposase
538	 28.74	0	667806..668219	+	137	18309520	-	CPE0538	-	hypothetical protein
539	 25.99	0	668530..669645	+	371	18309521	-	CPE0539	-	NAD-dependent 4-hydroxybutyrate dehydrogenase
540	 24.34	-1	669654..669842	+	62	18309522	-	CPE0540	-	hypothetical protein
541	 26.73	0	669878..670558	+	226	18309523	-	CPE0541	-	TrkA domain protein
542	 22.52	-1	670673..671125	-	150	18309524	-	CPE0542	-	MarR family transcriptional regulator
543	 25.22	-1	671379..672512	+	377	18309525	-	CPE0543	-	permease
544	 32.61	+1	672917..674308	+	463	18309526	-	CPE0544	-	proton/peptide symporter
545	 28.70	0	674471..674686	-	71	18309527	-	CPE0545	-	hypothetical protein
546	 22.08	-2	674700..674930	-	76	18309528	-	CPE0546	-	hypothetical protein
547	 31.46	0	675180..676730	+	516	18309529	-	CPE0547	-	nitrite/sulfite reductase-like protein
548	 29.17	0	677043..677858	+	271	18309530	speD	CPE0548	-	S-adenosylmethionine decarboxylase
549	 32.23	0	677876..679330	+	484	18309531	dclY	CPE0549	-	Orn/Lys/Arg decarboxylase
550	 30.75	0	679345..680196	+	283	18309532	speE	CPE0550	-	spermidine synthase
551	 33.10	+1	680183..681040	+	285	18309533	speB	CPE0551	-	agmatinase
552	 26.52	0	681358..681621	-	87	18309534	-	CPE0552	-	hypothetical protein
553	 30.75	0	681830..685351	+	1173	18309535	nanJ	CPE0553	-	exo-alpha-sialidase
554	 28.66	0	685497..686138	+	213	18309536	-	CPE0554	-	hypothetical protein
555	 30.94	0	686246..688915	-	889	18309537	-	CPE0555	-	copper-translocating P-type ATPase
556	 30.75	0	689207..689863	+	218	18309538	-	CPE0556	-	NAD(P)H dehydrogenase
557	 28.94	0	691147..692283	+	378	18309539	-	CPE0557	-	glycine betaine/carnitine/choline ABC transporter
558	 29.47	0	692276..693829	+	517	18309540	-	CPE0558	-	glycine betaine/carnitine/choline ABC transporter
559	 24.13	-1	694087..694662	+	191	18309541	sigV	CPE0559	-	RNA polymerase sigma-70 factor
560	 27.55	0	694655..695743	+	362	18309542	-	CPE0560	-	hypothetical protein
561	 34.81	+1	696091..697512	+	473	18309543	-	CPE0561	-	PTS system
562	 27.64	0	697716..699383	+	555	18309544	-	CPE0562	-	alpha-glucosidase
563	 28.25	0	699647..700354	+	235	18309545	treR	CPE0563	-	transcriptional regulator
564	 32.01	0	700806..702992	-	728	18309546	spoVD	CPE0564	-	stage V sporulation protein D
565	 27.95	0	703337..704005	+	222	18309547	-	CPE0565	-	N-acetylmuramoyl-L-alanine amidase
566	 28.07	0	704572..705672	+	366	18309548	ribB	CPE0566	-	riboflavin biosynthesis protein RibD
567	 28.75	0	705691..706344	+	217	18309549	risA	CPE0567	-	riboflavin synthase subunit alpha
568	 32.11	0	706550..707695	+	381	18309550	ribA	CPE0568	-	riboflavin biosynthesis protein RibA
569	 33.98	+1	707810..708271	+	153	18309551	ribH	CPE0569	-	riboflavin synthase subunit beta
570	 30.93	0	708394..709266	-	290	18309552	-	CPE0570	-	hypothetical protein
571	 29.17	0	709370..709777	-	135	18309553	-	CPE0571	-	hypothetical protein
572	 29.55	0	710160..710423	+	87	18309554	-	CPE0572	-	hypothetical protein
573	 32.70	+1	710699..712918	+	739	18309555	-	CPE0573	-	hypothetical protein
574	 26.35	0	713265..714854	+	529	18309556	-	CPE0574	-	sensor histidine kinase
575	 25.60	-1	714866..716455	+	529	18309557	-	CPE0575	-	DNA-binding response regulator, AraC family
576	 34.20	+1	716608..717993	+	461	18309558	-	CPE0576	-	ABC transporter
577	 31.62	0	718072..719007	+	311	18309559	-	CPE0577	-	ABC transporter permease
578	 31.05	0	719139..719882	+	247	18309560	-	CPE0578	-	ABC transporter
579	 31.18	0	720118..720813	+	231	18309561	-	CPE0579	-	DedA family protein
580	 26.61	0	720785..721915	+	376	18309562	-	CPE0580	-	iron-sulfur binding reductase
581	 25.68	0	722078..722665	+	195	18309563	-	CPE0581	-	hypothetical protein
582	 28.28	0	722951..723583	+	210	18309564	-	CPE0582	-	hypothetical protein
583	 34.33	+1	723576..724574	+	332	18309565	-	CPE0583	-	phosphate ABC transporter permease
584	 32.54	0	725006..726898	-	630	18309566	-	CPE0584	-	PTS system
585	 29.86	0	726902..727822	-	306	18309567	fruB	CPE0585	-	1-phosphofructokinase
586	 28.65	0	727822..728568	-	248	18309568	fruR	CPE0586	-	transcriptional regulator
587	 24.69	-1	728859..729182	+	107	18309569	-	CPE0587	-	hypothetical protein
588	 25.16	-1	729363..730463	-	366	18309570	-	CPE0588	-	permease
589	 26.52	0	730721..731380	+	219	18309571	-	CPE0589	-	isochorismatase family protein
590	 31.20	0	731757..733070	+	437	18309572	-	CPE0590	-	hypothetical protein
591	 29.00	0	733374..734297	+	307	18309573	-	CPE0591	-	glutaminase
592	 29.48	0	734586..735311	+	241	18309574	-	CPE0592	-	Mg2+ transporter
593	 28.86	0	741120..741812	+	230	18309575	sfsA	CPE0593	-	sugar fermentation stimulation protein A
594	 28.48	0	742291..742764	+	157	18309576	-	CPE0594	-	hydrolase, NUDIX family
595	 30.84	0	743070..744470	+	466	18309577	lysA	CPE0595	-	diaminopimelate decarboxylase
596	 29.21	0	744879..745145	+	88	18309578	-	CPE0596	-	hypothetical protein
597	 28.63	0	745148..745678	+	176	18309579	sipS	CPE0597	-	signal peptidase type I
598	 32.17	0	745703..747856	+	717	18309580	ftsH	CPE0598	-	ATP-dependent metalloprotease FtsH
599	 26.97	0	748076..750196	+	706	18309581	-	CPE0599	-	hypothetical protein
600	 31.18	0	750652..751488	+	278	18309582	-	CPE0600	-	amino acid ABC transporter
601	 30.51	0	751519..752190	+	223	18309583	-	CPE0601	-	amino acid ABC transporter
602	 30.15	0	752187..752909	+	240	18309584	-	CPE0602	-	amino acid ABC transporter
603	 28.91	0	753127..754935	+	602	18309585	-	CPE0603	-	hypothetical protein
604	 27.21	0	755187..757031	+	614	18309586	-	CPE0604	-	hypothetical protein
605	 28.26	0	757134..758315	-	393	18309587	-	CPE0605	-	cation efflux family protein
606	 31.18	0	758558..760465	+	635	18309588	entD	CPE0606	-	enterotoxin
607	 29.63	0	760607..761902	+	431	18309589	-	CPE0607	-	putative aminopeptidase 2
608	 30.26	0	761995..762189	-	64	18309590	-	CPE0608	-	hypothetical protein
609	 28.21	0	762581..763420	+	279	18309591	-	CPE0609	-	HAD hydrolase, IIB family
610	 28.83	0	763637..766966	-	1109	18309592	-	CPE0610	-	hypothetical protein
611	 33.21	+1	767227..768822	-	531	18309593	-	CPE0611	-	peptide chain release factor 3
612	 30.20	0	769036..769641	-	201	18309594	-	CPE0612	-	hypothetical protein
613	 29.84	0	770017..770817	+	266	18309595	-	CPE0613	-	hypothetical protein
614	 28.21	0	770858..771520	+	220	18309596	rfbP	CPE0614	-	undecaprenyl phosphate galactosephosphotransferase
615	 26.45	0	771521..772435	+	304	18309597	rfbN	CPE0615	-	rhamnosyl transferase
616	 31.63	0	772458..773339	+	293	18309598	rfbA	CPE0616	-	glucose-1-phosphate thymidylyltransferase
617	 30.23	0	773532..774014	+	160	18309599	rfbC	CPE0617	-	dTDP-4-dehydrorhamnose 3,5-epimerase
618	 29.04	0	774028..774912	+	294	18309600	rfbD	CPE0618	-	dTDP-4-dehydrorhamnose reductase
619	 29.71	0	774940..775989	+	349	18309601	rfbB	CPE0619	-	dTDP-glucose 4,6-dehydratase
620	 21.73	-2	776014..777228	+	404	18309602	-	CPE0620	-	hypothetical protein
621	 26.15	0	777225..778073	+	282	18309603	-	CPE0621	-	glycosyltransferase
622	 26.59	0	778167..778907	+	246	18309604	-	CPE0622	-	hypothetical protein
623	 23.48	-1	778916..780367	+	483	18309605	-	CPE0623	-	capsular polysaccharide synthesis protein
624	 29.46	0	780389..782812	+	807	18309606	-	CPE0624	-	hypothetical protein
625	 30.85	0	782941..784593	+	550	18309607	-	CPE0625	-	hypothetical protein
626	 28.72	0	784795..786159	+	454	18309608	-	CPE0626	-	hypothetical protein
627	 27.55	0	786364..788232	+	622	18309609	licA	CPE0627	-	choline kinase
628	 30.34	0	788258..789226	+	322	18309610	licB	CPE0628	-	lic-1 operon protein
629	 27.78	0	789373..790056	+	227	18309611	licC	CPE0629	-	lic-1 operon protein
630	 31.63	0	790175..791467	-	430	18309612	-	CPE0630	-	hypothetical protein
631	 30.29	0	791586..792605	-	339	18309613	-	CPE0631	-	PBP5 synthesis regulator protein
632	 29.88	0	792885..794159	-	424	18309614	brnQ	CPE0632	-	branched chain amino acid ABC transporter carrier protein
633	 31.03	0	794912..795910	+	332	18309615	trpS	CPE0633	-	tryptophanyl-tRNA synthetase
634	 21.85	-2	796572..797111	+	179	18309616	-	CPE0634	-	hypothetical protein
635	 29.74	0	797206..798318	+	370	18309617	-	CPE0635	-	anaerobic sulfatase-maturase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.