IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
347	 25.00	-1	439781..440452	-	223	18309329	-	CPE0347	-	transcriptional regulator
348	 32.45	0	441396..444215	+	939	18309330	uvrA	CPE0348	-	excinuclease ABC subunit A
349	 30.11	0	444550..444984	+	144	18309331	-	CPE0349	-	FHA domain protein
350	 29.43	0	444998..446227	+	409	18309332	ftsW	CPE0350	-	cell cycle protein, FtsW/RodA/SpoVE family
351	 33.61	+1	446228..447691	+	487	18309333	-	CPE0351	-	penicillin-binding protein
352	 31.78	0	447848..449710	+	620	18309334	uvrC	CPE0352	-	excinuclease ABC subunit C
353	 32.24	0	449859..450773	+	304	18309335	murB	CPE0353	-	UDP-N-acetylenolpyruvoylglucosamine reductase
354	 30.85	0	451013..451897	+	294	18309336	-	CPE0354	-	hypothetical protein
355	 31.77	0	451894..453240	+	448	18309337	-	CPE0355	-	hypothetical protein
356	 31.55	0	453243..454193	+	316	18309338	-	CPE0356	-	hypothetical protein
357	 28.47	0	454367..454921	+	184	18309339	-	CPE0357	-	hypothetical protein
358	 24.82	-1	455050..456294	-	414	18309340	-	CPE0358	-	hypothetical protein
359	 23.46	-1	456308..456844	-	178	18309341	-	CPE0359	-	RNA polymerase ECF-type sigma factor
360	 33.19	+1	457313..460891	+	1192	18309342	dnaE	CPE0360	-	DNA polymerase III DnaE
361	 34.79	+1	461602..462561	+	319	18309343	pfkA	CPE0361	-	6-phosphofructokinase
362	 36.89	+2	462655..464058	+	467	18309344	pykA	CPE0362	-	pyruvate kinase
363	 31.37	0	464641..464997	+	118	18309345	-	CPE0363	-	hypothetical protein
364	 29.07	0	465305..466102	+	265	18309346	-	CPE0364	-	dehydrogenase
365	 30.60	0	466277..467812	+	511	18309347	clsB	CPE0365	-	cardiolipin synthetase
366	 29.05	0	468439..470001	+	520	18309348	-	CPE0366	-	GntR family transcriptional regulator/aminotransferase
367	 31.21	0	470131..471498	+	455	18309349	-	CPE0367	-	RNA methyltransferase
368	 25.22	-1	472441..473340	+	299	18309350	-	CPE0368	-	hypothetical protein
369	 19.59	-2	473520..477425	+	1301	18309351	-	CPE0369	-	hypothetical protein
370	 25.76	0	477962..478819	-	285	18309352	-	CPE0370	-	transcriptional regulator
371	 31.91	0	479008..480276	+	422	18309353	-	CPE0371	-	hypothetical protein
372	 26.54	0	480350..481276	+	308	18309354	-	CPE0372	-	ABC transporter
373	 29.47	0	481293..482120	+	275	18309355	-	CPE0373	-	suger ABC transporter
374	 29.03	0	482148..484355	+	735	18309356	aga	CPE0374	-	alpha-galactosidase
375	 28.17	0	484394..486931	+	845	18309357	-	CPE0375	-	endo-beta-galactosidase C
376	 25.91	0	487133..487684	+	183	18309358	-	CPE0376	-	hypothetical protein
377	 30.40	0	487803..488381	+	192	18309359	-	CPE0377	-	TetR family transcriptional regulator
378	 33.00	+1	488731..490524	+	597	18309360	-	CPE0378	-	67 kDa myosin-cross-reactive antigen family protein
379	 29.24	0	490919..492652	+	577	18309361	-	CPE0379	-	ABC transporter permease/ATP-binding protein
380	 30.19	0	492645..494426	+	593	18309362	-	CPE0380	-	ABC transporter
381	 28.57	0	494507..494905	-	132	18309363	-	CPE0381	-	hypothetical protein
382	 29.93	0	495171..496199	+	342	18309364	-	CPE0382	-	autolytic lysozyme
383	 29.90	0	496521..496928	+	135	18309365	-	CPE0383	-	hypothetical protein
384	 27.04	0	497081..498001	-	306	18309366	-	CPE0384	-	hypothetical protein
385	 32.39	0	498485..499225	+	246	18309367	-	CPE0385	-	oxidoreductase
386	 28.14	0	499248..499979	-	243	18309368	-	CPE0386	-	transcriptional regulator
387	 34.35	+1	500213..500998	+	261	18309369	udp	CPE0387	-	uridine phosphorylase
388	 32.33	0	501176..502366	+	396	18309370	deoB	CPE0388	-	phosphopentomutase
389	 32.37	0	502793..504238	-	481	18309371	arcD	CPE0389	-	amino acid permease
390	 33.96	+1	504284..505246	-	320	18309372	dchS	CPE0390	-	histidine decarboxylase, pyruvoyl type
391	 28.54	0	505714..506547	+	277	18309373	-	CPE0391	-	phosphoesterase
392	 31.37	0	506672..506824	+	50	18309374	-	CPE0392	-	hypothetical protein
393	 32.64	+1	506921..507784	+	287	18309375	-	CPE0393	-	hypothetical protein
394	 28.81	0	508092..508997	+	301	18309376	nadA	CPE0394	-	quinolinate synthetase
395	 31.06	0	509002..510321	+	439	18309377	nadB	CPE0395	-	L-aspartate oxidase
396	 32.38	0	510278..511117	+	279	18309378	nadC	CPE0396	-	nicotinate-nucleotide pyrophosphorylase
397	 36.13	+2	511369..512727	-	452	18309379	uapC	CPE0397	-	transporter
398	 31.50	0	513402..514220	+	272	18309380	deoD	CPE0398	-	purine nucleoside phosphorylase
399	 27.43	0	514310..514987	+	225	18309381	-	CPE0399	-	transporter
400	 24.30	-1	515021..515662	+	213	18309382	-	CPE0400	-	hypothetical protein
401	 21.38	-2	515887..516204	+	105	18309383	-	CPE0401	-	hypothetical protein
402	 28.10	0	516217..516828	+	203	18309384	-	CPE0402	-	hypothetical protein
403	 23.09	-1	517036..517572	+	178	18309385	-	CPE0403	-	hypothetical protein
404	 30.94	0	518306..519643	+	445	18309386	brnQ	CPE0404	-	branched chain amino acid ABC transporter carrier protein
405	 29.90	0	519899..520771	+	290	18309387	-	CPE0405	-	hypothetical protein
406	 29.18	0	520903..522249	+	448	18309388	-	CPE0406	-	putative reticuline oxidase
407	 25.71	0	522549..522902	+	117	18309389	-	CPE0407	-	hypothetical protein
408	 31.15	0	523097..523921	+	274	18309390	-	CPE0408	-	hypothetical protein
409	 29.92	0	524071..525504	+	477	18309391	-	CPE0409	-	hypothetical protein
410	 25.92	0	525713..526912	+	399	18309392	-	CPE0410	-	transposase
411	 27.87	0	527033..527965	+	310	18309393	-	CPE0411	-	monooxygenase
412	 25.40	-1	528206..528583	+	125	18309394	-	CPE0412	-	hypothetical protein
413	 31.59	0	528800..529372	+	190	18309395	-	CPE0413	-	carbonic anhydrase
414	 28.17	0	529513..530151	+	212	18309396	-	CPE0414	-	hypothetical protein
415	 25.64	-1	530176..530565	+	129	18309397	-	CPE0415	-	hypothetical protein
416	 26.71	0	530899..532770	+	623	18309398	htpG	CPE0416	-	heat shock protein 90
417	 28.70	0	532934..533926	+	330	18309399	-	CPE0417	-	LacI family transcriptional regulator
418	 30.57	0	534362..536026	+	554	18309400	-	CPE0418	-	exo-alpha-1,4-glucosidase
419	 33.21	+1	536285..537940	+	551	18309401	-	CPE0419	-	PTS system, IIBC component
420	 28.03	0	537951..538742	+	263	18309402	-	CPE0420	-	endonuclease/exonuclease/phosphatase family protein
421	 27.24	0	539283..540020	+	245	18309403	glpQ	CPE0421	-	glycerophosphodiester phosphodiesterase
422	 30.54	0	540117..541403	+	428	18309404	-	CPE0422	-	hypothetical protein
423	 28.59	0	541903..544515	+	870	18309405	pcrA	CPE0423	-	ATP-dependent DNA helicase
424	 28.94	0	544692..545351	+	219	18309406	trmB	CPE0424	-	tRNA (guanine-N(7))-methyltransferase
425	 24.56	-1	545510..546364	-	284	18309407	-	CPE0425	-	hypothetical protein
426	 31.46	0	546981..548264	+	427	18309408	-	CPE0426	-	hypothetical protein
427	 26.60	0	548732..549310	+	192	18309409	-	CPE0427	-	hypothetical protein
428	 32.69	+1	549541..549696	+	51	18309410	-	CPE0428	-	hypothetical protein
429	 24.09	-1	550064..550615	+	183	18309411	-	CPE0429	-	hypothetical protein
430	 27.81	0	550703..551245	-	180	18309412	sipS	CPE0430	-	type I signal peptidase
431	 24.44	-1	551453..552295	+	280	18309413	-	CPE0431	-	hypothetical protein
432	 25.36	-1	552580..553419	+	279	18309414	-	CPE0432	-	hydrolase, alpha/beta fold family
433	 30.40	0	553503..554798	+	431	18309415	-	CPE0433	-	hypothetical protein
434	 30.27	0	555174..555662	+	162	18309416	-	CPE0434	-	GNAT family acetyltransferase
435	 24.70	-1	555721..556056	-	111	18309417	-	CPE0435	-	hypothetical protein
436	 29.74	0	556062..556478	-	138	18309418	-	CPE0436	-	hypothetical protein
437	 28.33	0	557024..558361	+	445	18309419	hlyB	CPE0437	-	hemolysin
438	 29.91	0	558636..559688	+	350	18309420	-	CPE0438	-	ion-uptake ABC transporter
439	 28.44	0	559688..561280	+	530	18309421	-	CPE0439	-	iron-uptake ABC transporter
440	 29.66	0	561283..561963	+	226	18309422	-	CPE0440	-	ABC transporter
441	 33.77	+1	562253..562942	+	229	18309423	-	CPE0441	-	hypothetical protein
442	 32.18	0	563132..563305	+	57	18309424	-	CPE0442	-	BFD-like iron-sulfur cluster-binding protein
443	 33.06	+1	563577..563948	+	123	18309425	-	CPE0443	-	GntR family transcriptional regulator
444	 24.31	-1	563982..564845	+	287	18309426	-	CPE0444	-	ABC transporter
445	 20.57	-2	564847..565473	+	208	18309427	-	CPE0445	-	hypothetical protein
446	 21.81	-2	565475..566116	+	213	18309428	-	CPE0446	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.