IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
311	 31.56	0	395519..396307	+	262	18309293	etfB	CPE0311	-	electron transfer flavoprotein beta-subunit
312	 32.83	+1	396320..397513	+	397	18309294	eftA	CPE0312	-	electron-transfer flavoprotein alpha-subunit
313	 30.62	0	397515..398915	+	466	18309295	-	CPE0313	-	glycolate oxidase subunit
314	 31.58	0	398998..399396	-	132	18309296	-	CPE0314	-	hypothetical protein
315	 29.80	0	399764..400273	+	169	18309297	sipS	CPE0315	-	type I signal peptidase
316	 28.33	0	400516..401295	-	259	18309298	-	CPE0316	-	transcriptional regulator
317	 29.99	0	401487..402890	+	467	18309299	fucK	CPE0317	-	rhamnulokinase
318	 34.45	+1	402971..404758	+	595	18309300	fucI	CPE0318	-	L-fucose isomerase
319	 30.75	0	404788..405444	+	218	18309301	fucA	CPE0319	-	L-fuculose phosphate aldolase
320	 27.40	0	405449..405886	+	145	18309302	-	CPE0320	-	hypothetical protein
321	 28.48	0	405877..406350	+	157	18309303	-	CPE0321	-	PTS system protein
322	 31.53	0	406367..407143	+	258	18309304	-	CPE0322	-	PTS system protein
323	 28.86	0	407140..407943	+	267	18309305	-	CPE0323	-	PTS system protein
324	 30.90	0	408080..409396	+	438	18309306	-	CPE0324	-	glycosyl hydrolase
325	 28.20	0	409414..411303	+	629	18309307	-	CPE0325	-	hypothetical protein
326	 32.40	0	411556..411984	+	142	18309308	lacA	CPE0326	-	galactose-6-phosphate isomerase subunit LacA
327	 30.04	0	412020..412535	+	171	18309309	lacB	CPE0327	-	galactose-6-phosphate isomerase subunit LacB
328	 28.40	0	412552..413484	+	310	18309310	lacC	CPE0328	-	tagatose-6-phosphate kinase
329	 29.94	0	413725..416112	+	795	18309311	-	CPE0329	-	hypothetical protein
330	 31.23	0	416323..416703	-	126	18309312	-	CPE0330	-	hypothetical protein
331	 28.30	0	417022..417696	+	224	18309313	-	CPE0331	-	hypothetical protein
332	 30.13	0	417887..418510	-	207	18309314	-	CPE0332	-	DedA family protein
333	 31.38	0	418607..421264	-	885	18309315	-	CPE0333	-	cation-transporting ATPase
334	 37.59	+2	422038..422601	+	187	18309316	-	CPE0334	-	hypothetical protein
335	 28.80	0	423159..423731	+	190	18309317	xpt	CPE0335	-	xanthine phosphoribosyltransferase
336	 27.22	0	424217..425149	+	310	18309318	-	CPE0336	-	hypothetical protein
337	 32.54	0	425340..426722	+	460	18309319	-	CPE0337	-	amino acid transporter
338	 27.74	0	426876..428180	-	434	18309320	-	CPE0338	-	hypothetical protein
339	 33.91	+1	428452..429837	+	461	18309321	tldD	CPE0339	-	TldD protein
340	 30.07	0	429853..431202	+	449	18309322	pmbA	CPE0340	-	TldD/PmbA family protein
341	 30.43	0	431519..433105	+	528	18309323	-	CPE0341	-	aspartate aminotransferase
342	 30.43	0	433417..433899	+	160	18309324	-	CPE0342	-	methylated-DNA-protein-cystein methyltransferase
343	 29.43	0	433948..436122	+	724	18309325	recQ	CPE0343	-	ATP-dependent DNA helicase RecQ
344	 25.56	-1	436353..437150	+	265	18309326	-	CPE0344	-	hypothetical protein
345	 29.90	0	437275..438732	+	485	18309327	-	CPE0345	-	hypothetical protein
346	 26.67	0	438898..439647	+	249	18309328	-	CPE0346	-	transcriptional regulator
347	 25.00	-1	439781..440452	-	223	18309329	-	CPE0347	-	transcriptional regulator
348	 32.45	0	441396..444215	+	939	18309330	uvrA	CPE0348	-	excinuclease ABC subunit A
349	 30.11	0	444550..444984	+	144	18309331	-	CPE0349	-	FHA domain protein
350	 29.43	0	444998..446227	+	409	18309332	ftsW	CPE0350	-	cell cycle protein, FtsW/RodA/SpoVE family
351	 33.61	+1	446228..447691	+	487	18309333	-	CPE0351	-	penicillin-binding protein
352	 31.78	0	447848..449710	+	620	18309334	uvrC	CPE0352	-	excinuclease ABC subunit C
353	 32.24	0	449859..450773	+	304	18309335	murB	CPE0353	-	UDP-N-acetylenolpyruvoylglucosamine reductase
354	 30.85	0	451013..451897	+	294	18309336	-	CPE0354	-	hypothetical protein
355	 31.77	0	451894..453240	+	448	18309337	-	CPE0355	-	hypothetical protein
356	 31.55	0	453243..454193	+	316	18309338	-	CPE0356	-	hypothetical protein
357	 28.47	0	454367..454921	+	184	18309339	-	CPE0357	-	hypothetical protein
358	 24.82	-1	455050..456294	-	414	18309340	-	CPE0358	-	hypothetical protein
359	 23.46	-1	456308..456844	-	178	18309341	-	CPE0359	-	RNA polymerase ECF-type sigma factor
360	 33.19	+1	457313..460891	+	1192	18309342	dnaE	CPE0360	-	DNA polymerase III DnaE
361	 34.79	+1	461602..462561	+	319	18309343	pfkA	CPE0361	-	6-phosphofructokinase
362	 36.89	+2	462655..464058	+	467	18309344	pykA	CPE0362	-	pyruvate kinase
363	 31.37	0	464641..464997	+	118	18309345	-	CPE0363	-	hypothetical protein
364	 29.07	0	465305..466102	+	265	18309346	-	CPE0364	-	dehydrogenase
365	 30.60	0	466277..467812	+	511	18309347	clsB	CPE0365	-	cardiolipin synthetase
366	 29.05	0	468439..470001	+	520	18309348	-	CPE0366	-	GntR family transcriptional regulator/aminotransferase
367	 31.21	0	470131..471498	+	455	18309349	-	CPE0367	-	RNA methyltransferase
368	 25.22	-1	472441..473340	+	299	18309350	-	CPE0368	-	hypothetical protein
369	 19.59	-2	473520..477425	+	1301	18309351	-	CPE0369	-	hypothetical protein
370	 25.76	0	477962..478819	-	285	18309352	-	CPE0370	-	transcriptional regulator
371	 31.91	0	479008..480276	+	422	18309353	-	CPE0371	-	hypothetical protein
372	 26.54	0	480350..481276	+	308	18309354	-	CPE0372	-	ABC transporter
373	 29.47	0	481293..482120	+	275	18309355	-	CPE0373	-	suger ABC transporter
374	 29.03	0	482148..484355	+	735	18309356	aga	CPE0374	-	alpha-galactosidase
375	 28.17	0	484394..486931	+	845	18309357	-	CPE0375	-	endo-beta-galactosidase C
376	 25.91	0	487133..487684	+	183	18309358	-	CPE0376	-	hypothetical protein
377	 30.40	0	487803..488381	+	192	18309359	-	CPE0377	-	TetR family transcriptional regulator
378	 33.00	+1	488731..490524	+	597	18309360	-	CPE0378	-	67 kDa myosin-cross-reactive antigen family protein
379	 29.24	0	490919..492652	+	577	18309361	-	CPE0379	-	ABC transporter permease/ATP-binding protein
380	 30.19	0	492645..494426	+	593	18309362	-	CPE0380	-	ABC transporter
381	 28.57	0	494507..494905	-	132	18309363	-	CPE0381	-	hypothetical protein
382	 29.93	0	495171..496199	+	342	18309364	-	CPE0382	-	autolytic lysozyme
383	 29.90	0	496521..496928	+	135	18309365	-	CPE0383	-	hypothetical protein
384	 27.04	0	497081..498001	-	306	18309366	-	CPE0384	-	hypothetical protein
385	 32.39	0	498485..499225	+	246	18309367	-	CPE0385	-	oxidoreductase
386	 28.14	0	499248..499979	-	243	18309368	-	CPE0386	-	transcriptional regulator
387	 34.35	+1	500213..500998	+	261	18309369	udp	CPE0387	-	uridine phosphorylase
388	 32.33	0	501176..502366	+	396	18309370	deoB	CPE0388	-	phosphopentomutase
389	 32.37	0	502793..504238	-	481	18309371	arcD	CPE0389	-	amino acid permease
390	 33.96	+1	504284..505246	-	320	18309372	dchS	CPE0390	-	histidine decarboxylase, pyruvoyl type
391	 28.54	0	505714..506547	+	277	18309373	-	CPE0391	-	phosphoesterase
392	 31.37	0	506672..506824	+	50	18309374	-	CPE0392	-	hypothetical protein
393	 32.64	+1	506921..507784	+	287	18309375	-	CPE0393	-	hypothetical protein
394	 28.81	0	508092..508997	+	301	18309376	nadA	CPE0394	-	quinolinate synthetase
395	 31.06	0	509002..510321	+	439	18309377	nadB	CPE0395	-	L-aspartate oxidase
396	 32.38	0	510278..511117	+	279	18309378	nadC	CPE0396	-	nicotinate-nucleotide pyrophosphorylase
397	 36.13	+2	511369..512727	-	452	18309379	uapC	CPE0397	-	transporter
398	 31.50	0	513402..514220	+	272	18309380	deoD	CPE0398	-	purine nucleoside phosphorylase
399	 27.43	0	514310..514987	+	225	18309381	-	CPE0399	-	transporter
400	 24.30	-1	515021..515662	+	213	18309382	-	CPE0400	-	hypothetical protein
401	 21.38	-2	515887..516204	+	105	18309383	-	CPE0401	-	hypothetical protein
402	 28.10	0	516217..516828	+	203	18309384	-	CPE0402	-	hypothetical protein
403	 23.09	-1	517036..517572	+	178	18309385	-	CPE0403	-	hypothetical protein
404	 30.94	0	518306..519643	+	445	18309386	brnQ	CPE0404	-	branched chain amino acid ABC transporter carrier protein
405	 29.90	0	519899..520771	+	290	18309387	-	CPE0405	-	hypothetical protein
406	 29.18	0	520903..522249	+	448	18309388	-	CPE0406	-	putative reticuline oxidase
407	 25.71	0	522549..522902	+	117	18309389	-	CPE0407	-	hypothetical protein
408	 31.15	0	523097..523921	+	274	18309390	-	CPE0408	-	hypothetical protein
409	 29.92	0	524071..525504	+	477	18309391	-	CPE0409	-	hypothetical protein
410	 25.92	0	525713..526912	+	399	18309392	-	CPE0410	-	transposase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.