IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
254	 32.93	+1	327069..327317	+	82	18309236	-	CPE0254	-	hypothetical protein
255	 19.05	-2	327402..327716	-	104	18309237	-	CPE0255	-	hypothetical protein
256	 31.16	0	327853..328587	-	244	18309238	-	CPE0256	-	NAD-dependent deacetylase
257	 25.62	-1	328757..329080	+	107	18309239	-	CPE0257	-	hypothetical protein
258	 25.71	0	329114..329323	+	69	18309240	-	CPE0258	-	transcriptional regulator
259	 27.42	0	329698..330204	+	168	18309241	-	CPE0259	-	CarD family transcriptional regulator
260	 26.12	0	330592..331728	+	378	18309242	-	CPE0260	-	mechanosensitive ion channel family protein
261	 29.97	0	331725..332348	+	207	18309243	-	CPE0261	-	copper homeostasis protein
262	 30.35	0	332724..332924	+	66	18309244	-	CPE0262	-	hypothetical protein
263	 29.24	0	333045..334364	-	439	18309245	-	CPE0263	-	hypothetical protein
264	 22.90	-1	334577..334873	-	98	18309246	-	CPE0264	-	hypothetical protein
265	 29.20	0	335081..335758	-	225	18309247	-	CPE0265	-	uracil-DNA glycosylase
266	 30.06	0	336095..338632	+	845	18309248	-	CPE0266	-	beta-hexosamidase A
267	 25.85	0	344672..345139	-	155	18309249	-	CPE0267	-	bacterioferritin comigratory protein
268	 30.92	0	345779..346525	+	248	18309250	-	CPE0268	-	hypothetical protein
269	 29.27	0	346988..347800	+	270	18309251	-	CPE0269	-	ABC transporter
270	 29.75	0	347818..348990	+	390	18309252	-	CPE0270	-	ABC transporter
271	 27.88	0	349004..350287	+	427	18309253	-	CPE0271	-	hypothetical protein
272	 27.51	0	350306..351541	+	411	18309254	-	CPE0272	-	hypothetical protein
273	 29.78	0	351555..352736	+	393	18309255	-	CPE0273	-	ABC transporter
274	 25.24	-1	352851..354284	+	477	18309256	-	CPE0274	-	hypothetical protein
275	 29.97	0	354420..355073	-	217	18309257	-	CPE0275	-	haloacid dehalogenase, IA family protein
276	 31.56	0	355156..356505	-	449	18309258	-	CPE0276	-	hydrogenase
277	 26.46	0	357202..357492	+	96	18309259	-	CPE0277	-	hypothetical protein
278	 33.33	+1	357677..358975	+	432	18309260	-	CPE0278	-	hypothetical protein
279	 30.22	0	359149..359919	+	256	18309261	-	CPE0279	-	hypothetical protein
280	 28.59	0	359922..360764	+	280	18309262	-	CPE0280	-	tetrapyrrole methylase family protein
281	 31.25	0	361080..361319	-	79	18309263	-	CPE0281	-	AbrB family transcriptional regulator
282	 29.17	0	362011..362610	+	199	18309264	-	CPE0282	-	hypothetical protein
283	 27.05	0	362646..363521	-	291	18309265	-	CPE0283	-	hypothetical protein
284	 30.40	0	363632..364654	-	340	18309266	-	CPE0284	-	transcriptional regulator
285	 27.46	0	364830..365681	+	283	18309267	-	CPE0285	-	YihY family protein
286	 32.32	0	365742..366728	-	328	18309268	galE	CPE0286	-	UDP-glucose 4-epimerase
287	 29.86	0	366883..367227	+	114	18309269	-	CPE0287	-	phage-related single-strand DNA binding protein
288	 31.37	0	367303..368424	-	373	18309270	-	CPE0288	-	flavoprotein
289	 32.63	+1	369002..372418	-	1138	18309271	-	CPE0289	-	endo-beta-N-acetylglucosaminidase
290	 28.10	0	372789..373094	+	101	18309272	-	CPE0290	-	hypothetical protein
291	 28.36	0	373143..373544	+	133	18309273	acpS	CPE0291	-	4'-phosphopantetheinyl transferase
292	 28.47	0	373531..375030	+	499	18309274	-	CPE0292	-	carbohydrate kinase family protein
293	 25.42	-1	375091..375684	+	197	18309275	-	CPE0293	-	hypothetical protein
294	 29.63	0	375931..376173	+	80	18309276	-	CPE0294	-	hypothetical protein
295	 30.79	0	376179..376532	+	117	18309277	-	CPE0295	-	PemK family protein
296	 35.64	+1	376970..377794	+	274	18309278	tktN	CPE0296	-	transketolase N-terminal section
297	 34.50	+1	377794..378738	+	314	18309279	tktC	CPE0297	-	transketolase C-terminal section
298	 29.95	0	378965..379822	+	285	18309280	-	CPE0298	-	hypothetical protein
299	 32.02	0	380028..380714	+	228	18309281	ftsE	CPE0299	-	cell-division ATP-binding protein
300	 31.83	0	380680..381612	+	310	18309282	ftsX	CPE0300	-	cell-division protein
301	 31.55	0	381701..382987	+	428	18309283	-	CPE0301	-	carboxyl-terminal protease
302	 28.10	0	383010..384290	+	426	18309284	-	CPE0302	-	hypothetical protein
303	 32.07	0	384378..386357	+	659	18309285	uvrB	CPE0303	-	excinuclease ABC subunit B
304	 31.81	0	386623..387474	+	283	18309286	-	CPE0304	-	degV family protein
305	 30.17	0	387705..388430	+	241	18309287	-	CPE0305	-	ABC transporter
306	 25.33	-1	388423..390021	+	532	18309288	-	CPE0306	-	hypothetical protein
307	 30.55	0	390238..391242	+	334	18309289	-	CPE0307	-	lipase
308	 26.50	0	391401..392966	+	521	18309290	-	CPE0308	-	MutS domain protein
309	 29.84	0	392981..393667	+	228	18309291	-	CPE0309	-	transcriptional regulator
310	 33.27	+1	393902..395425	+	507	18309292	-	CPE0310	-	L-lactate permease
311	 31.56	0	395519..396307	+	262	18309293	etfB	CPE0311	-	electron transfer flavoprotein beta-subunit
312	 32.83	+1	396320..397513	+	397	18309294	eftA	CPE0312	-	electron-transfer flavoprotein alpha-subunit
313	 30.62	0	397515..398915	+	466	18309295	-	CPE0313	-	glycolate oxidase subunit
314	 31.58	0	398998..399396	-	132	18309296	-	CPE0314	-	hypothetical protein
315	 29.80	0	399764..400273	+	169	18309297	sipS	CPE0315	-	type I signal peptidase
316	 28.33	0	400516..401295	-	259	18309298	-	CPE0316	-	transcriptional regulator
317	 29.99	0	401487..402890	+	467	18309299	fucK	CPE0317	-	rhamnulokinase
318	 34.45	+1	402971..404758	+	595	18309300	fucI	CPE0318	-	L-fucose isomerase
319	 30.75	0	404788..405444	+	218	18309301	fucA	CPE0319	-	L-fuculose phosphate aldolase
320	 27.40	0	405449..405886	+	145	18309302	-	CPE0320	-	hypothetical protein
321	 28.48	0	405877..406350	+	157	18309303	-	CPE0321	-	PTS system protein
322	 31.53	0	406367..407143	+	258	18309304	-	CPE0322	-	PTS system protein
323	 28.86	0	407140..407943	+	267	18309305	-	CPE0323	-	PTS system protein
324	 30.90	0	408080..409396	+	438	18309306	-	CPE0324	-	glycosyl hydrolase
325	 28.20	0	409414..411303	+	629	18309307	-	CPE0325	-	hypothetical protein
326	 32.40	0	411556..411984	+	142	18309308	lacA	CPE0326	-	galactose-6-phosphate isomerase subunit LacA
327	 30.04	0	412020..412535	+	171	18309309	lacB	CPE0327	-	galactose-6-phosphate isomerase subunit LacB
328	 28.40	0	412552..413484	+	310	18309310	lacC	CPE0328	-	tagatose-6-phosphate kinase
329	 29.94	0	413725..416112	+	795	18309311	-	CPE0329	-	hypothetical protein
330	 31.23	0	416323..416703	-	126	18309312	-	CPE0330	-	hypothetical protein
331	 28.30	0	417022..417696	+	224	18309313	-	CPE0331	-	hypothetical protein
332	 30.13	0	417887..418510	-	207	18309314	-	CPE0332	-	DedA family protein
333	 31.38	0	418607..421264	-	885	18309315	-	CPE0333	-	cation-transporting ATPase
334	 37.59	+2	422038..422601	+	187	18309316	-	CPE0334	-	hypothetical protein
335	 28.80	0	423159..423731	+	190	18309317	xpt	CPE0335	-	xanthine phosphoribosyltransferase
336	 27.22	0	424217..425149	+	310	18309318	-	CPE0336	-	hypothetical protein
337	 32.54	0	425340..426722	+	460	18309319	-	CPE0337	-	amino acid transporter
338	 27.74	0	426876..428180	-	434	18309320	-	CPE0338	-	hypothetical protein
339	 33.91	+1	428452..429837	+	461	18309321	tldD	CPE0339	-	TldD protein
340	 30.07	0	429853..431202	+	449	18309322	pmbA	CPE0340	-	TldD/PmbA family protein
341	 30.43	0	431519..433105	+	528	18309323	-	CPE0341	-	aspartate aminotransferase
342	 30.43	0	433417..433899	+	160	18309324	-	CPE0342	-	methylated-DNA-protein-cystein methyltransferase
343	 29.43	0	433948..436122	+	724	18309325	recQ	CPE0343	-	ATP-dependent DNA helicase RecQ
344	 25.56	-1	436353..437150	+	265	18309326	-	CPE0344	-	hypothetical protein
345	 29.90	0	437275..438732	+	485	18309327	-	CPE0345	-	hypothetical protein
346	 26.67	0	438898..439647	+	249	18309328	-	CPE0346	-	transcriptional regulator
347	 25.00	-1	439781..440452	-	223	18309329	-	CPE0347	-	transcriptional regulator
348	 32.45	0	441396..444215	+	939	18309330	uvrA	CPE0348	-	excinuclease ABC subunit A
349	 30.11	0	444550..444984	+	144	18309331	-	CPE0349	-	FHA domain protein
350	 29.43	0	444998..446227	+	409	18309332	ftsW	CPE0350	-	cell cycle protein, FtsW/RodA/SpoVE family
351	 33.61	+1	446228..447691	+	487	18309333	-	CPE0351	-	penicillin-binding protein
352	 31.78	0	447848..449710	+	620	18309334	uvrC	CPE0352	-	excinuclease ABC subunit C
353	 32.24	0	449859..450773	+	304	18309335	murB	CPE0353	-	UDP-N-acetylenolpyruvoylglucosamine reductase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.