IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
216	 27.55	0	283514..287041	+	1175	18309198	sbcC	CPE0216	-	exonuclease SbcC
217	 30.33	0	287446..288642	+	398	18309199	ackA	CPE0217	-	acetate kinase
218	 25.30	-1	289079..289900	+	273	18309200	-	CPE0218	-	DnaJ-related protein
219	 24.64	-1	290151..290909	-	252	18309201	-	CPE0219	-	AraC family transcriptional regulator
220	 29.88	0	291056..293287	+	743	18309202	-	CPE0220	-	hypothetical protein
221	 29.78	0	293350..293997	+	215	18309203	-	CPE0221	-	putative iron transporter
222	 28.01	0	293999..294562	+	187	18309204	-	CPE0222	-	sortase family protein
223	 30.86	0	294576..295463	+	295	18309205	-	CPE0223	-	ferrichrome ABC transporter
224	 31.71	0	295450..296436	+	328	18309206	-	CPE0224	-	ferrichrome ABC transporter
225	 27.44	0	296437..297216	+	259	18309207	fhuC	CPE0225	-	ferrichrome ABC transporter
226	 28.71	0	297255..298985	+	576	18309208	-	CPE0226	-	ABC transporter
227	 29.48	0	298986..300674	+	562	18309209	-	CPE0227	-	ABC transporter
228	 25.76	0	300661..301056	+	131	18309210	-	CPE0228	-	hypothetical protein
229	 26.33	0	301037..301336	+	99	18309211	-	CPE0229	-	hypothetical protein
230	 29.03	0	301463..301648	+	61	18309212	-	CPE0230	-	iron-sulfur cluster-binding protein
231	 31.74	0	301943..303388	+	481	18309213	-	CPE0231	-	arylsulfatase
232	 33.11	+1	303546..304883	-	445	18309214	glpT	CPE0232	-	glycerol-3-phosphate transporter
233	 30.10	0	305084..306103	-	339	18309215	-	CPE0233	-	iron(III) ABC transporter
234	 24.33	-1	306084..306872	-	262	18309216	-	CPE0234	-	hypothetical protein
235	 26.00	0	306865..308295	-	476	18309217	-	CPE0235	-	sensor histidine kinase
236	 26.34	0	308285..308956	-	223	18309218	-	CPE0236	-	DNA-binding response regulator
237	 29.42	0	309248..310447	+	399	18309219	napA	CPE0237	-	Na+/H+ antiporter
238	 25.19	-1	310700..311227	+	175	18309220	-	CPE0238	-	hypothetical protein
239	 27.16	0	311601..312377	+	258	18309221	-	CPE0239	-	hypothetical protein
240	 27.46	0	312795..314225	+	476	18309222	-	CPE0240	-	hypothetical protein
241	 29.87	0	314228..314920	+	230	18309223	-	CPE0241	-	hypothetical protein
242	 23.36	-1	315018..315338	-	106	18309224	-	CPE0242	-	immunity protein
243	 26.91	0	315473..315721	+	82	18309225	-	CPE0243	-	hypothetical protein
244	 21.24	-2	315728..316504	+	258	18309226	-	CPE0244	-	hypothetical protein
245	 24.48	-1	316595..318922	-	775	18309227	-	CPE0245	-	GGDEF/EAL domain protein
246	 24.27	-1	319177..320445	+	422	18309228	-	CPE0246	-	dnaJ domain protein
247	 27.69	0	320463..321065	+	200	18309229	grpE	CPE0247	-	GrpE protein
248	 30.50	0	321053..322780	+	575	18309230	dnaK	CPE0248	-	dnaK family protein
249	 23.13	-1	322798..323532	+	244	18309231	-	CPE0249	-	hypothetical protein
250	 28.42	0	323804..324577	+	257	18309232	-	CPE0250	-	capsular polysaccharide biosynthesis protein
251	 28.57	0	324892..326214	+	440	18309233	-	CPE0251	-	hypothetical protein
252	 23.27	-1	326287..326733	-	148	18309234	-	CPE0252	-	hypothetical protein
253	 27.45	0	326853..327056	+	67	18309235	-	CPE0253	-	hypothetical protein
254	 32.93	+1	327069..327317	+	82	18309236	-	CPE0254	-	hypothetical protein
255	 19.05	-2	327402..327716	-	104	18309237	-	CPE0255	-	hypothetical protein
256	 31.16	0	327853..328587	-	244	18309238	-	CPE0256	-	NAD-dependent deacetylase
257	 25.62	-1	328757..329080	+	107	18309239	-	CPE0257	-	hypothetical protein
258	 25.71	0	329114..329323	+	69	18309240	-	CPE0258	-	transcriptional regulator
259	 27.42	0	329698..330204	+	168	18309241	-	CPE0259	-	CarD family transcriptional regulator
260	 26.12	0	330592..331728	+	378	18309242	-	CPE0260	-	mechanosensitive ion channel family protein
261	 29.97	0	331725..332348	+	207	18309243	-	CPE0261	-	copper homeostasis protein
262	 30.35	0	332724..332924	+	66	18309244	-	CPE0262	-	hypothetical protein
263	 29.24	0	333045..334364	-	439	18309245	-	CPE0263	-	hypothetical protein
264	 22.90	-1	334577..334873	-	98	18309246	-	CPE0264	-	hypothetical protein
265	 29.20	0	335081..335758	-	225	18309247	-	CPE0265	-	uracil-DNA glycosylase
266	 30.06	0	336095..338632	+	845	18309248	-	CPE0266	-	beta-hexosamidase A
267	 25.85	0	344672..345139	-	155	18309249	-	CPE0267	-	bacterioferritin comigratory protein
268	 30.92	0	345779..346525	+	248	18309250	-	CPE0268	-	hypothetical protein
269	 29.27	0	346988..347800	+	270	18309251	-	CPE0269	-	ABC transporter
270	 29.75	0	347818..348990	+	390	18309252	-	CPE0270	-	ABC transporter
271	 27.88	0	349004..350287	+	427	18309253	-	CPE0271	-	hypothetical protein
272	 27.51	0	350306..351541	+	411	18309254	-	CPE0272	-	hypothetical protein
273	 29.78	0	351555..352736	+	393	18309255	-	CPE0273	-	ABC transporter
274	 25.24	-1	352851..354284	+	477	18309256	-	CPE0274	-	hypothetical protein
275	 29.97	0	354420..355073	-	217	18309257	-	CPE0275	-	haloacid dehalogenase, IA family protein
276	 31.56	0	355156..356505	-	449	18309258	-	CPE0276	-	hydrogenase
277	 26.46	0	357202..357492	+	96	18309259	-	CPE0277	-	hypothetical protein
278	 33.33	+1	357677..358975	+	432	18309260	-	CPE0278	-	hypothetical protein
279	 30.22	0	359149..359919	+	256	18309261	-	CPE0279	-	hypothetical protein
280	 28.59	0	359922..360764	+	280	18309262	-	CPE0280	-	tetrapyrrole methylase family protein
281	 31.25	0	361080..361319	-	79	18309263	-	CPE0281	-	AbrB family transcriptional regulator
282	 29.17	0	362011..362610	+	199	18309264	-	CPE0282	-	hypothetical protein
283	 27.05	0	362646..363521	-	291	18309265	-	CPE0283	-	hypothetical protein
284	 30.40	0	363632..364654	-	340	18309266	-	CPE0284	-	transcriptional regulator
285	 27.46	0	364830..365681	+	283	18309267	-	CPE0285	-	YihY family protein
286	 32.32	0	365742..366728	-	328	18309268	galE	CPE0286	-	UDP-glucose 4-epimerase
287	 29.86	0	366883..367227	+	114	18309269	-	CPE0287	-	phage-related single-strand DNA binding protein
288	 31.37	0	367303..368424	-	373	18309270	-	CPE0288	-	flavoprotein
289	 32.63	+1	369002..372418	-	1138	18309271	-	CPE0289	-	endo-beta-N-acetylglucosaminidase
290	 28.10	0	372789..373094	+	101	18309272	-	CPE0290	-	hypothetical protein
291	 28.36	0	373143..373544	+	133	18309273	acpS	CPE0291	-	4'-phosphopantetheinyl transferase
292	 28.47	0	373531..375030	+	499	18309274	-	CPE0292	-	carbohydrate kinase family protein
293	 25.42	-1	375091..375684	+	197	18309275	-	CPE0293	-	hypothetical protein
294	 29.63	0	375931..376173	+	80	18309276	-	CPE0294	-	hypothetical protein
295	 30.79	0	376179..376532	+	117	18309277	-	CPE0295	-	PemK family protein
296	 35.64	+1	376970..377794	+	274	18309278	tktN	CPE0296	-	transketolase N-terminal section
297	 34.50	+1	377794..378738	+	314	18309279	tktC	CPE0297	-	transketolase C-terminal section
298	 29.95	0	378965..379822	+	285	18309280	-	CPE0298	-	hypothetical protein
299	 32.02	0	380028..380714	+	228	18309281	ftsE	CPE0299	-	cell-division ATP-binding protein
300	 31.83	0	380680..381612	+	310	18309282	ftsX	CPE0300	-	cell-division protein
301	 31.55	0	381701..382987	+	428	18309283	-	CPE0301	-	carboxyl-terminal protease
302	 28.10	0	383010..384290	+	426	18309284	-	CPE0302	-	hypothetical protein
303	 32.07	0	384378..386357	+	659	18309285	uvrB	CPE0303	-	excinuclease ABC subunit B
304	 31.81	0	386623..387474	+	283	18309286	-	CPE0304	-	degV family protein
305	 30.17	0	387705..388430	+	241	18309287	-	CPE0305	-	ABC transporter
306	 25.33	-1	388423..390021	+	532	18309288	-	CPE0306	-	hypothetical protein
307	 30.55	0	390238..391242	+	334	18309289	-	CPE0307	-	lipase
308	 26.50	0	391401..392966	+	521	18309290	-	CPE0308	-	MutS domain protein
309	 29.84	0	392981..393667	+	228	18309291	-	CPE0309	-	transcriptional regulator
310	 33.27	+1	393902..395425	+	507	18309292	-	CPE0310	-	L-lactate permease
311	 31.56	0	395519..396307	+	262	18309293	etfB	CPE0311	-	electron transfer flavoprotein beta-subunit
312	 32.83	+1	396320..397513	+	397	18309294	eftA	CPE0312	-	electron-transfer flavoprotein alpha-subunit
313	 30.62	0	397515..398915	+	466	18309295	-	CPE0313	-	glycolate oxidase subunit
314	 31.58	0	398998..399396	-	132	18309296	-	CPE0314	-	hypothetical protein
315	 29.80	0	399764..400273	+	169	18309297	sipS	CPE0315	-	type I signal peptidase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.